Wall clock time and date at job start Tue Mar 31 2020 03:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47413 * 2 1 4 4 C 1.46770 * 124.34919 * 269.72720 * 3 2 1 5 5 C 1.54661 * 105.38148 * 162.85285 * 4 3 2 6 6 H 1.09002 * 111.22434 * 267.57581 * 5 4 3 7 7 N 1.46504 * 110.82277 * 143.77810 * 5 4 3 8 8 C 1.34772 * 120.00424 * 161.34729 * 7 5 4 9 9 O 1.21585 * 119.99656 * 0.02562 * 8 7 5 10 10 N 1.34778 * 120.00126 * 179.97438 * 8 7 5 11 11 C 1.46496 * 119.99713 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47086 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47071 * 300.00717 * 12 11 10 14 14 C 1.53002 * 109.46681 * 60.00183 * 12 11 10 15 15 C 1.50693 * 109.47347 * 180.02562 * 12 11 10 16 16 H 1.08003 * 120.00033 * 1.34861 * 15 12 11 17 17 C 1.37878 * 120.00368 * 181.34742 * 15 12 11 18 18 N 1.31507 * 120.00471 * 193.97557 * 17 15 12 19 19 Si 1.86798 * 119.99652 * 13.97871 * 17 15 12 20 20 H 1.48504 * 109.47453 * 84.54803 * 19 17 15 21 21 H 1.48498 * 109.47158 * 204.54786 * 19 17 15 22 22 H 1.48501 * 109.47281 * 324.54948 * 19 17 15 23 23 C 1.54621 * 101.68661 * 25.76715 * 5 4 3 24 24 C 1.34414 * 124.35332 * 90.02283 * 3 2 1 25 25 O 1.21284 * 124.94054 * 0.43012 * 24 3 2 26 26 H 1.08996 * 109.47117 * 300.00297 * 1 2 3 27 27 H 1.08996 * 109.47698 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46871 * 59.99796 * 1 2 3 29 29 H 1.08996 * 109.47454 * 120.00136 * 2 1 3 30 30 H 1.09005 * 109.47089 * 239.99886 * 2 1 3 31 31 H 1.09001 * 110.24773 * 281.98348 * 4 3 2 32 32 H 1.08995 * 110.24610 * 43.98184 * 4 3 2 33 33 H 0.97003 * 119.99384 * 341.34810 * 7 5 4 34 34 H 0.96996 * 119.99787 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47387 * 300.00418 * 11 10 8 36 36 H 1.09001 * 109.47176 * 60.00961 * 11 10 8 37 37 H 1.09001 * 109.47728 * 69.36372 * 13 12 11 38 38 H 1.09000 * 109.47292 * 189.36861 * 13 12 11 39 39 H 1.09002 * 109.46976 * 309.35948 * 13 12 11 40 40 H 1.09000 * 109.47108 * 60.00111 * 14 12 11 41 41 H 1.08996 * 109.46897 * 179.97438 * 14 12 11 42 42 H 1.08994 * 109.47411 * 299.99998 * 14 12 11 43 43 H 0.97001 * 120.00506 * 179.97438 * 18 17 15 44 44 H 1.09002 * 110.48594 * 216.30946 * 23 5 4 45 45 H 1.09001 * 110.60217 * 93.71944 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2999 2.1600 -1.2117 5 6 2.3527 3.6346 -0.7485 6 1 1.3781 4.1134 -0.8442 7 7 3.3738 4.3775 -1.4912 8 6 3.3372 5.7244 -1.5239 9 8 2.4568 6.3229 -0.9365 10 7 4.2769 6.4078 -2.2067 11 6 4.2366 7.8718 -2.2426 12 6 5.4066 8.3938 -3.0791 13 6 6.7254 7.9349 -2.4538 14 6 5.2996 7.8456 -4.5035 15 6 5.3656 9.8997 -3.1155 16 1 4.5960 10.4322 -2.5762 17 6 6.3104 10.5980 -3.8372 18 7 6.4512 11.8929 -3.6564 19 14 7.3904 9.7044 -5.0720 20 1 6.6741 9.5950 -6.3682 21 1 8.6521 10.4630 -5.2661 22 1 7.7034 8.3449 -4.5632 23 6 2.7508 3.4820 0.7377 24 6 2.2716 2.0961 1.1097 25 8 2.1361 1.6892 2.2442 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.2574 1.8612 -1.6382 32 1 1.5020 2.0234 -1.9417 33 1 4.0764 3.9000 -1.9595 34 1 4.9795 5.9303 -2.6749 35 1 3.2973 8.1986 -2.6885 36 1 4.3125 8.2623 -1.2278 37 1 6.8303 6.8570 -2.5768 38 1 7.5563 8.4395 -2.9469 39 1 6.7292 8.1816 -1.3920 40 1 4.3600 8.1724 -4.9490 41 1 6.1328 8.2178 -5.0995 42 1 5.3295 6.7564 -4.4768 43 1 7.1162 12.3840 -4.1638 44 1 2.2497 4.2350 1.3461 45 1 3.8320 3.5560 0.8547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459031124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:12 Heat of formation + Delta-G solvation = -74.284983 kcal Electronic energy + Delta-G solvation = -24424.883986 eV Core-core repulsion = 20863.032008 eV Total energy + Delta-G solvation = -3561.851978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77957 -40.77540 -38.59071 -37.67348 -35.85334 -34.97617 -33.69224 -32.91281 -30.05325 -28.60035 -27.96689 -27.32339 -26.71505 -24.32188 -23.02316 -21.92456 -20.88670 -20.52484 -19.48786 -18.03544 -17.86614 -17.77183 -17.06305 -16.87408 -16.43400 -16.17009 -15.44149 -15.21598 -14.96269 -14.92458 -14.76691 -14.68853 -14.41731 -14.30027 -14.22519 -13.93232 -13.71150 -13.27913 -12.99816 -12.88488 -12.71860 -12.36007 -12.33905 -12.09953 -11.98690 -11.91576 -11.71676 -11.35887 -11.08931 -11.00419 -10.58686 -10.35985 -10.30523 -9.80218 -9.70758 -8.27106 -6.28881 1.39262 1.40828 1.44867 1.54205 1.61537 2.03084 2.22149 2.37959 3.09058 3.21593 3.38576 3.55468 3.84355 4.00623 4.12845 4.15350 4.26410 4.39498 4.46797 4.51058 4.54063 4.60036 4.75668 4.81646 4.84451 4.86309 4.90157 4.91615 4.97180 5.00609 5.12253 5.24027 5.28968 5.47295 5.49643 5.55679 5.61768 5.76958 5.85024 6.01217 6.08554 6.34613 6.76162 7.05011 7.20245 7.36040 7.66827 8.90217 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.038019 B = 0.002729 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.292523 B =10256.268074 C =10469.753143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.612 5.612 4 C 0.107 3.893 5 C 0.162 3.838 6 H 0.095 0.905 7 N -0.717 5.717 8 C 0.701 3.299 9 O -0.637 6.637 10 N -0.723 5.723 11 C 0.177 3.823 12 C 0.028 3.972 13 C -0.140 4.140 14 C -0.146 4.146 15 C -0.518 4.518 16 H 0.026 0.974 17 C 0.013 3.987 18 N -0.949 5.949 19 Si 0.947 3.053 20 H -0.282 1.282 21 H -0.319 1.319 22 H -0.200 1.200 23 C -0.168 4.168 24 C 0.516 3.484 25 O -0.580 6.580 26 H 0.031 0.969 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.418 0.582 34 H 0.410 0.590 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.264 0.736 44 H 0.087 0.913 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 -28.472 -1.165 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.346 5.346 4 C -0.016 4.016 5 C 0.055 3.945 6 H 0.114 0.886 7 N -0.375 5.375 8 C 0.401 3.599 9 O -0.518 6.518 10 N -0.379 5.379 11 C 0.052 3.948 12 C 0.027 3.973 13 C -0.198 4.198 14 C -0.203 4.203 15 C -0.556 4.556 16 H 0.044 0.956 17 C -0.184 4.184 18 N -0.588 5.588 19 Si 0.776 3.224 20 H -0.209 1.209 21 H -0.249 1.249 22 H -0.123 1.123 23 C -0.209 4.209 24 C 0.305 3.695 25 O -0.460 6.460 26 H 0.050 0.950 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.256 0.744 34 H 0.248 0.752 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.795 -28.081 -0.120 28.672 hybrid contribution 0.832 0.648 -0.509 1.171 sum -4.963 -27.433 -0.629 27.885 Atomic orbital electron populations 1.22143 0.95423 1.03299 1.01703 1.21568 0.94651 0.79934 1.04266 1.48444 1.64760 1.14629 1.06728 1.22478 1.05208 0.87006 0.86917 1.21486 0.92447 0.92028 0.88587 0.88647 1.44686 1.32641 1.03383 1.56776 1.16103 0.81972 0.82336 0.79515 1.90916 1.39827 1.69518 1.51561 1.45060 1.30578 1.07076 1.55208 1.20854 0.98020 0.77373 0.98507 1.18653 0.92470 0.93332 0.92852 1.22215 0.97593 1.00022 0.99946 1.22279 1.00382 1.00577 0.97017 1.21062 1.12905 0.90989 1.30627 0.95600 1.25909 0.98273 0.95305 0.98900 1.70122 1.36348 1.10168 1.42178 0.86309 0.76429 0.80640 0.78991 1.20896 1.24879 1.12318 1.22827 1.04513 0.94441 0.99167 1.21073 0.75965 0.88158 0.84342 1.90695 1.55677 1.76461 1.23215 0.94970 0.89640 0.91296 0.91391 0.86633 0.87092 0.86797 0.74364 0.75240 0.94145 0.94613 0.91166 0.93808 0.94297 0.93533 0.94870 0.90293 0.92765 0.89441 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 71.98 0.74 -0.96 16 2 C 0.12 1.18 6.65 86.38 0.57 1.75 16 3 N -0.61 -8.29 2.93 -817.64 -2.40 -10.68 16 4 C 0.11 0.78 7.06 86.89 0.61 1.39 16 5 C 0.16 2.44 3.44 46.11 0.16 2.60 16 6 H 0.10 1.83 7.72 -2.39 -0.02 1.82 16 7 N -0.72 -11.09 5.19 -452.48 -2.35 -13.43 16 8 C 0.70 19.07 8.56 179.06 1.53 20.60 16 9 O -0.64 -24.16 16.09 -3.98 -0.06 -24.23 16 10 N -0.72 -19.36 5.01 -478.54 -2.40 -21.75 16 11 C 0.18 6.70 4.49 86.38 0.39 7.08 16 12 C 0.03 1.13 0.50 -52.93 -0.03 1.10 16 13 C -0.14 -5.00 7.53 71.98 0.54 -4.46 16 14 C -0.15 -5.03 7.52 71.98 0.54 -4.49 16 15 C -0.52 -27.99 8.62 25.60 0.22 -27.77 16 16 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 17 C 0.01 0.74 5.32 84.66 0.45 1.19 16 18 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 19 Si 0.95 41.54 22.79 68.60 1.56 43.11 16 20 H -0.28 -12.08 7.10 99.48 0.71 -11.37 16 21 H -0.32 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.20 -7.19 4.65 99.48 0.46 -6.73 16 23 C -0.17 -3.28 6.58 30.59 0.20 -3.08 16 24 C 0.52 11.34 8.02 87.90 0.70 12.04 16 25 O -0.58 -18.17 17.59 -3.04 -0.05 -18.23 16 26 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 0.92 7.92 -2.39 -0.02 0.91 16 30 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.11 0.21 7.77 -2.39 -0.02 0.19 16 32 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.42 3.09 8.38 -92.71 -0.78 2.31 16 34 H 0.41 7.96 6.27 -92.71 -0.58 7.38 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.82 7.13 -2.39 -0.02 1.80 16 38 H 0.04 1.67 4.30 -2.39 -0.01 1.66 16 39 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.03 1.21 2.25 -2.39 -0.01 1.20 16 42 H 0.08 1.95 6.86 -2.39 -0.02 1.93 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.12 2.08 8.08 -2.39 -0.02 2.06 16 Total: -1.00 -81.04 351.35 0.65 -80.39 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.59 Total: 16.05 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.64 Total: 7.00 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -6.84 Total: -104.09 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.12 Total: -42.46 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.56 Total: 43.11 kcal Total: -81.04 0.65 -80.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459031124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.107 kcal (2) G-P(sol) polarization free energy of solvation -81.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds