Wall clock time and date at job start Tue Mar 31 2020 03:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46908 * 2 1 4 4 C 1.45648 * 117.70142 * 90.00278 * 3 2 1 5 5 C 1.52987 * 110.77180 * 158.10069 * 4 3 2 6 6 N 1.47273 * 108.18717 * 46.72200 * 5 4 3 7 7 C 1.34776 * 121.35028 * 118.47601 * 6 5 4 8 8 O 1.21589 * 119.99581 * 184.93401 * 7 6 5 9 9 N 1.34770 * 120.00286 * 4.93658 * 7 6 5 10 10 C 1.46503 * 120.00182 * 174.97106 * 9 7 6 11 11 C 1.53001 * 109.47143 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46832 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47020 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99670 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99839 * 179.97438 * 13 12 11 16 16 N 1.31503 * 120.00448 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99712 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46937 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47164 * 300.00203 * 17 15 13 20 20 H 1.48502 * 109.46943 * 59.99982 * 17 15 13 21 21 C 1.47048 * 117.29417 * 298.74850 * 6 5 4 22 22 H 1.08999 * 109.56707 * 282.66269 * 21 6 5 23 23 C 1.53004 * 109.56912 * 162.31376 * 21 6 5 24 24 C 1.33376 * 117.70242 * 270.02326 * 3 2 1 25 25 O 1.21273 * 118.49618 * 4.31909 * 24 3 2 26 26 H 1.08993 * 109.47104 * 59.99911 * 1 2 3 27 27 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46925 * 299.99459 * 1 2 3 29 29 H 1.09002 * 109.46925 * 240.00541 * 2 1 3 30 30 H 1.08994 * 109.47629 * 120.00085 * 2 1 3 31 31 H 1.08993 * 109.22051 * 37.76915 * 4 3 2 32 32 H 1.08999 * 109.18379 * 278.40522 * 4 3 2 33 33 H 1.09006 * 109.71919 * 287.05449 * 5 4 3 34 34 H 1.09000 * 109.75985 * 166.41859 * 5 4 3 35 35 H 0.96998 * 119.99875 * 354.96830 * 9 7 6 36 36 H 1.09001 * 109.46980 * 59.99725 * 10 9 7 37 37 H 1.09005 * 109.47119 * 299.99828 * 10 9 7 38 38 H 1.09001 * 109.47051 * 60.00204 * 11 10 9 39 39 H 1.08992 * 109.47533 * 299.99968 * 11 10 9 40 40 H 1.08993 * 109.47143 * 60.00022 * 12 11 10 41 41 H 1.09000 * 109.46953 * 300.00082 * 12 11 10 42 42 H 0.97006 * 119.99944 * 0.02562 * 16 15 13 43 43 H 1.08998 * 109.47446 * 69.31201 * 23 21 6 44 44 H 1.09001 * 109.47044 * 189.32086 * 23 21 6 45 45 H 1.09004 * 109.46108 * 309.31348 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2440 2.0196 1.2895 5 6 3.2228 3.1875 1.1529 6 7 2.8116 3.9987 -0.0055 7 6 2.4487 5.2890 0.1355 8 8 2.0282 5.9102 -0.8215 9 7 2.5519 5.8907 1.3369 10 6 2.2627 7.3210 1.4672 11 6 2.4534 7.7494 2.9236 12 6 2.1520 9.2433 3.0593 13 6 2.3404 9.6654 4.4938 14 1 2.6451 8.9406 5.2343 15 6 2.1248 10.9769 4.8604 16 7 1.7553 11.8596 3.9584 17 14 2.3577 11.4999 6.6386 18 1 2.0665 12.9500 6.7701 19 1 1.4328 10.7279 7.5068 20 1 3.7596 11.2375 7.0521 21 6 2.8073 3.3419 -1.3211 22 1 3.8284 3.2665 -1.6948 23 6 1.9603 4.1590 -2.2990 24 6 2.2245 1.9660 -1.1809 25 8 1.9245 1.3594 -2.1872 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.6539 1.2877 1.9854 32 1 1.2950 2.3904 1.6767 33 1 4.2314 2.8055 0.9950 34 1 3.1976 3.7970 2.0562 35 1 2.8176 5.3768 2.1155 36 1 1.2333 7.5126 1.1642 37 1 2.9407 7.8883 0.8294 38 1 3.4827 7.5577 3.2269 39 1 1.7752 7.1821 3.5609 40 1 1.1229 9.4353 2.7559 41 1 2.8306 9.8102 2.4220 42 1 1.6340 11.5879 3.0351 43 1 2.4676 5.0974 -2.5228 44 1 1.8208 3.5926 -3.2198 45 1 0.9891 4.3688 -1.8507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488954571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:46 Heat of formation + Delta-G solvation = -55.308174 kcal Electronic energy + Delta-G solvation = -24581.684049 eV Core-core repulsion = 21020.654967 eV Total energy + Delta-G solvation = -3561.029082 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39678 -39.71846 -36.93277 -36.15551 -35.33339 -33.80520 -32.05104 -31.60265 -30.43777 -28.68808 -26.41358 -25.41972 -23.83971 -23.28622 -22.65425 -20.94563 -20.57453 -18.97359 -18.02855 -17.64834 -16.81265 -16.59250 -16.39309 -15.91661 -15.47566 -14.85342 -14.56555 -14.21582 -13.98006 -13.90581 -13.75571 -13.41506 -13.36292 -13.17705 -12.92718 -12.42329 -12.28352 -12.13834 -12.12281 -11.91004 -11.68029 -11.61435 -11.32435 -10.91139 -10.82183 -10.43840 -10.19317 -10.05230 -9.96089 -9.43762 -9.20633 -9.04869 -8.70055 -8.60713 -8.36543 -6.39472 -4.09643 2.18784 2.28057 2.61987 3.12602 3.40961 3.42800 3.61865 3.69962 4.02626 4.25285 4.51638 4.54644 4.57596 4.71403 4.84171 4.89621 4.93103 5.00398 5.05644 5.29045 5.30888 5.37674 5.51034 5.56174 5.63830 5.65134 5.82690 5.91967 5.94371 6.00722 6.10294 6.28526 6.43994 6.45751 6.61581 6.78570 6.82298 6.99920 7.32569 7.45029 7.75470 7.86056 8.14864 8.41514 8.54797 8.84186 9.63077 11.01300 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.002671 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.015448 B =10480.349193 C =11087.978554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.602 5.602 4 C 0.098 3.902 5 C 0.096 3.904 6 N -0.637 5.637 7 C 0.709 3.291 8 O -0.575 6.575 9 N -0.740 5.740 10 C 0.134 3.866 11 C -0.113 4.113 12 C 0.011 3.989 13 C -0.605 4.605 14 H 0.048 0.952 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 1.069 2.931 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.288 1.288 21 C 0.154 3.846 22 H 0.101 0.899 23 C -0.129 4.129 24 C 0.513 3.487 25 O -0.538 6.538 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.391 0.609 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.270 0.730 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -24.967 -5.351 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.336 5.336 4 C -0.026 4.026 5 C -0.028 4.028 6 N -0.378 5.378 7 C 0.411 3.589 8 O -0.453 6.453 9 N -0.397 5.397 10 C 0.011 3.989 11 C -0.151 4.151 12 C -0.026 4.026 13 C -0.643 4.643 14 H 0.067 0.933 15 C -0.190 4.190 16 N -0.547 5.547 17 Si 0.897 3.103 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.215 1.215 21 C 0.048 3.952 22 H 0.119 0.881 23 C -0.187 4.187 24 C 0.300 3.700 25 O -0.415 6.415 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.227 0.773 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.410 -23.437 -5.572 24.211 hybrid contribution 0.252 -1.704 -0.328 1.753 sum 2.662 -25.141 -5.899 25.961 Atomic orbital electron populations 1.22088 0.95614 1.02273 1.02529 1.21557 0.94943 0.82201 1.03250 1.47312 1.65623 1.14799 1.05838 1.21830 1.00248 0.95539 0.85001 1.21990 0.98293 0.92342 0.90165 1.47438 1.72399 1.10357 1.07638 1.15829 0.78568 0.80419 0.84070 1.90964 1.51761 1.64490 1.38043 1.45598 1.73766 1.11794 1.08496 1.21540 1.01043 0.77343 0.99014 1.21749 1.00943 1.00356 0.92050 1.19149 0.96221 0.89433 0.97842 1.22007 1.51213 0.97162 0.93907 0.93318 1.25860 0.93918 0.93117 1.06061 1.70775 1.43369 1.36728 1.03853 0.83541 0.76342 0.76284 0.74097 1.20734 1.21454 1.21459 1.21136 1.01328 0.88606 0.84169 0.88140 1.22068 1.00453 0.99636 0.96517 1.20386 0.78146 0.88470 0.82990 1.90722 1.51178 1.63944 1.35616 0.92050 0.91539 0.92609 0.89583 0.90457 0.89130 0.91058 0.89869 0.88107 0.77290 0.91831 0.91917 0.92602 0.92614 0.97140 0.97148 0.91980 0.88920 0.92153 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.23 37.16 0.38 -0.88 16 2 C 0.10 0.75 5.88 -4.04 -0.02 0.73 16 3 N -0.60 -5.22 2.81 -175.04 -0.49 -5.71 16 4 C 0.10 0.59 6.57 -4.51 -0.03 0.56 16 5 C 0.10 0.63 6.52 -3.63 -0.02 0.61 16 6 N -0.64 -6.87 2.98 -172.44 -0.51 -7.39 16 7 C 0.71 10.12 8.16 -86.92 -0.71 9.41 16 8 O -0.58 -10.24 12.22 5.29 0.06 -10.18 16 9 N -0.74 -9.92 5.48 -65.22 -0.36 -10.28 16 10 C 0.13 2.24 5.68 -4.04 -0.02 2.22 16 11 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 12 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 13 C -0.60 -16.79 9.11 -34.44 -0.31 -17.11 16 14 H 0.05 1.31 7.74 -52.48 -0.41 0.90 16 15 C 0.01 0.41 5.46 -17.83 -0.10 0.32 16 16 N -0.91 -27.79 13.65 55.43 0.76 -27.04 16 17 Si 1.07 24.81 29.90 -169.99 -5.08 19.73 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.15 1.74 3.66 -69.08 -0.25 1.49 16 22 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 23 C -0.13 -1.70 7.57 37.16 0.28 -1.42 16 24 C 0.51 5.90 7.07 -11.91 -0.08 5.82 16 25 O -0.54 -7.72 15.46 5.56 0.09 -7.64 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.74 7.23 -51.93 -0.38 0.36 16 30 H 0.08 0.36 7.80 -51.93 -0.41 -0.05 16 31 H 0.09 0.29 7.84 -51.93 -0.41 -0.12 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.52 5.65 -51.93 -0.29 0.23 16 35 H 0.39 4.07 6.00 -40.82 -0.24 3.83 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 41 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 42 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 43 H 0.09 1.33 6.51 -51.93 -0.34 1.00 16 44 H 0.06 0.76 7.58 -51.93 -0.39 0.37 16 45 H 0.07 1.00 7.21 -51.93 -0.37 0.63 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -34.72 357.53 -8.70 -43.42 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.39 Total: 0.05 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.16 Total: -0.36 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.61 Total: -50.41 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.15 Total: -17.81 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.72 -8.70 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488954571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.888 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds