Wall clock time and date at job start Tue Mar 31 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46908 * 2 1 4 4 C 1.45648 * 117.70142 * 90.00278 * 3 2 1 5 5 C 1.52987 * 110.77180 * 158.10069 * 4 3 2 6 6 N 1.47273 * 108.18717 * 46.72200 * 5 4 3 7 7 C 1.34776 * 121.35028 * 118.47601 * 6 5 4 8 8 O 1.21589 * 119.99581 * 184.93401 * 7 6 5 9 9 N 1.34770 * 120.00286 * 4.93658 * 7 6 5 10 10 C 1.46503 * 120.00182 * 174.97106 * 9 7 6 11 11 C 1.53001 * 109.47143 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46832 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47020 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99670 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99839 * 179.97438 * 13 12 11 16 16 N 1.31503 * 120.00448 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99712 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46937 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47164 * 300.00203 * 17 15 13 20 20 H 1.48502 * 109.46943 * 59.99982 * 17 15 13 21 21 C 1.47048 * 117.29417 * 298.74850 * 6 5 4 22 22 H 1.08999 * 109.56707 * 282.66269 * 21 6 5 23 23 C 1.53004 * 109.56912 * 162.31376 * 21 6 5 24 24 C 1.33376 * 117.70242 * 270.02326 * 3 2 1 25 25 O 1.21273 * 118.49618 * 4.31909 * 24 3 2 26 26 H 1.08993 * 109.47104 * 59.99911 * 1 2 3 27 27 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46925 * 299.99459 * 1 2 3 29 29 H 1.09002 * 109.46925 * 240.00541 * 2 1 3 30 30 H 1.08994 * 109.47629 * 120.00085 * 2 1 3 31 31 H 1.08993 * 109.22051 * 37.76915 * 4 3 2 32 32 H 1.08999 * 109.18379 * 278.40522 * 4 3 2 33 33 H 1.09006 * 109.71919 * 287.05449 * 5 4 3 34 34 H 1.09000 * 109.75985 * 166.41859 * 5 4 3 35 35 H 0.96998 * 119.99875 * 354.96830 * 9 7 6 36 36 H 1.09001 * 109.46980 * 59.99725 * 10 9 7 37 37 H 1.09005 * 109.47119 * 299.99828 * 10 9 7 38 38 H 1.09001 * 109.47051 * 60.00204 * 11 10 9 39 39 H 1.08992 * 109.47533 * 299.99968 * 11 10 9 40 40 H 1.08993 * 109.47143 * 60.00022 * 12 11 10 41 41 H 1.09000 * 109.46953 * 300.00082 * 12 11 10 42 42 H 0.97006 * 119.99944 * 0.02562 * 16 15 13 43 43 H 1.08998 * 109.47446 * 69.31201 * 23 21 6 44 44 H 1.09001 * 109.47044 * 189.32086 * 23 21 6 45 45 H 1.09004 * 109.46108 * 309.31348 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2440 2.0196 1.2895 5 6 3.2228 3.1875 1.1529 6 7 2.8116 3.9987 -0.0055 7 6 2.4487 5.2890 0.1355 8 8 2.0282 5.9102 -0.8215 9 7 2.5519 5.8907 1.3369 10 6 2.2627 7.3210 1.4672 11 6 2.4534 7.7494 2.9236 12 6 2.1520 9.2433 3.0593 13 6 2.3404 9.6654 4.4938 14 1 2.6451 8.9406 5.2343 15 6 2.1248 10.9769 4.8604 16 7 1.7553 11.8596 3.9584 17 14 2.3577 11.4999 6.6386 18 1 2.0665 12.9500 6.7701 19 1 1.4328 10.7279 7.5068 20 1 3.7596 11.2375 7.0521 21 6 2.8073 3.3419 -1.3211 22 1 3.8284 3.2665 -1.6948 23 6 1.9603 4.1590 -2.2990 24 6 2.2245 1.9660 -1.1809 25 8 1.9245 1.3594 -2.1872 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.6539 1.2877 1.9854 32 1 1.2950 2.3904 1.6767 33 1 4.2314 2.8055 0.9950 34 1 3.1976 3.7970 2.0562 35 1 2.8176 5.3768 2.1155 36 1 1.2333 7.5126 1.1642 37 1 2.9407 7.8883 0.8294 38 1 3.4827 7.5577 3.2269 39 1 1.7752 7.1821 3.5609 40 1 1.1229 9.4353 2.7559 41 1 2.8306 9.8102 2.4220 42 1 1.6340 11.5879 3.0351 43 1 2.4676 5.0974 -2.5228 44 1 1.8208 3.5926 -3.2198 45 1 0.9891 4.3688 -1.8507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488954571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:45 Heat of formation + Delta-G solvation = -79.069894 kcal Electronic energy + Delta-G solvation = -24582.714434 eV Core-core repulsion = 21020.654967 eV Total energy + Delta-G solvation = -3562.059468 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.28447 -40.74116 -37.79103 -37.41300 -36.40587 -35.58372 -33.41917 -32.46830 -31.60920 -29.50497 -28.04497 -26.45510 -24.91067 -24.50151 -23.66398 -22.51016 -21.68796 -19.90202 -18.94498 -18.87598 -18.45928 -17.42269 -17.25150 -16.88348 -16.62440 -15.87862 -15.73176 -15.60010 -15.35610 -14.93604 -14.87879 -14.77404 -14.25669 -14.18969 -13.81230 -13.60756 -13.55854 -13.29934 -13.13100 -12.82680 -12.78081 -12.61670 -12.54736 -12.49621 -12.01324 -11.90302 -11.81626 -11.76123 -11.39444 -10.73505 -10.58671 -10.52370 -10.23985 -9.89491 -9.64487 -8.66324 -6.37688 1.25736 1.40927 1.55674 1.64231 1.82879 1.86174 2.02597 2.59825 2.78398 3.18822 3.28708 3.65187 3.83734 3.98952 4.05356 4.08262 4.14653 4.14826 4.22217 4.32337 4.43656 4.46145 4.56215 4.65834 4.74571 4.81636 4.82441 4.85356 4.87430 4.96364 4.98965 5.05079 5.23887 5.28568 5.38852 5.42261 5.49676 5.50739 5.71696 6.00243 6.21197 6.25885 6.58722 6.85280 6.93428 7.45593 7.45784 8.74629 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.002671 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.015448 B =10480.349193 C =11087.978554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.597 5.597 4 C 0.094 3.906 5 C 0.089 3.911 6 N -0.630 5.630 7 C 0.705 3.295 8 O -0.618 6.618 9 N -0.727 5.727 10 C 0.150 3.850 11 C -0.093 4.093 12 C 0.007 3.993 13 C -0.616 4.616 14 H 0.060 0.940 15 C -0.044 4.044 16 N -0.942 5.942 17 Si 1.119 2.881 18 H -0.289 1.289 19 H -0.266 1.266 20 H -0.266 1.266 21 C 0.154 3.846 22 H 0.119 0.881 23 C -0.118 4.118 24 C 0.510 3.490 25 O -0.576 6.576 26 H 0.027 0.973 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.410 0.590 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.068 0.932 40 H -0.013 1.013 41 H -0.011 1.011 42 H 0.255 0.745 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.295 -27.507 -2.462 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.329 5.329 4 C -0.029 4.029 5 C -0.033 4.033 6 N -0.370 5.370 7 C 0.407 3.593 8 O -0.498 6.498 9 N -0.385 5.385 10 C 0.026 3.974 11 C -0.131 4.131 12 C -0.030 4.030 13 C -0.654 4.654 14 H 0.078 0.922 15 C -0.241 4.241 16 N -0.580 5.580 17 Si 0.940 3.060 18 H -0.214 1.214 19 H -0.191 1.191 20 H -0.191 1.191 21 C 0.047 3.953 22 H 0.136 0.864 23 C -0.176 4.176 24 C 0.297 3.703 25 O -0.455 6.455 26 H 0.046 0.954 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.151 0.849 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.249 0.751 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.006 0.994 41 H 0.007 0.993 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.774 -26.062 -2.625 26.464 hybrid contribution -0.185 -0.978 -1.249 1.597 sum 3.589 -27.040 -3.874 27.551 Atomic orbital electron populations 1.22057 0.96001 1.02997 1.01079 1.21716 0.94570 0.81469 1.04371 1.47427 1.64194 1.15320 1.05924 1.22094 1.00344 0.96273 0.84161 1.22401 0.99680 0.92229 0.89001 1.47392 1.71367 1.09369 1.08854 1.15965 0.78388 0.81402 0.83521 1.90953 1.53510 1.65926 1.39421 1.45191 1.73728 1.10401 1.09166 1.21069 0.99694 0.79292 0.97374 1.21460 1.02007 0.96215 0.93435 1.19116 0.94334 0.93404 0.96196 1.22494 1.50069 0.97481 0.95350 0.92190 1.27495 0.93052 0.93824 1.09684 1.70917 1.45900 1.37559 1.03592 0.82922 0.77907 0.75750 0.69457 1.21449 1.19136 1.19089 1.21105 1.01774 0.88342 0.84060 0.86385 1.21851 0.99352 0.99273 0.97089 1.20333 0.78141 0.88234 0.83560 1.90708 1.52989 1.64715 1.37118 0.95412 0.89823 0.92002 0.91168 0.86555 0.84860 0.91279 0.87409 0.86257 0.75130 0.93625 0.93283 0.91111 0.91296 0.99419 0.99289 0.93597 0.90426 0.92198 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.23 71.98 0.74 -1.47 16 2 C 0.10 1.21 5.88 86.38 0.51 1.72 16 3 N -0.60 -8.86 2.81 -826.88 -2.32 -11.18 16 4 C 0.09 0.74 6.57 86.54 0.57 1.30 16 5 C 0.09 0.82 6.52 86.23 0.56 1.38 16 6 N -0.63 -12.47 2.98 -817.73 -2.44 -14.91 16 7 C 0.71 19.60 8.16 179.06 1.46 21.06 16 8 O -0.62 -22.61 12.22 -4.00 -0.05 -22.66 16 9 N -0.73 -18.23 5.48 -478.52 -2.62 -20.85 16 10 C 0.15 5.00 5.68 86.38 0.49 5.49 16 11 C -0.09 -3.38 5.27 30.60 0.16 -3.22 16 12 C 0.01 0.36 4.28 29.85 0.13 0.49 16 13 C -0.62 -33.87 9.11 25.60 0.23 -33.64 16 14 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 15 C -0.04 -2.49 5.46 84.66 0.46 -2.03 16 16 N -0.94 -58.64 13.65 21.44 0.29 -58.34 16 17 Si 1.12 48.79 29.90 68.60 2.05 50.84 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 21 C 0.15 3.38 3.66 43.95 0.16 3.54 16 22 H 0.12 2.18 8.14 -2.39 -0.02 2.17 16 23 C -0.12 -3.26 7.57 71.98 0.55 -2.72 16 24 C 0.51 11.29 7.07 87.68 0.62 11.91 16 25 O -0.58 -16.72 15.46 -3.01 -0.05 -16.76 16 26 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.11 7.23 -2.39 -0.02 1.09 16 30 H 0.12 0.53 7.80 -2.39 -0.02 0.51 16 31 H 0.13 0.02 7.84 -2.39 -0.02 0.01 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.57 8.14 -2.38 -0.02 0.56 16 34 H 0.12 0.67 5.65 -2.39 -0.01 0.66 16 35 H 0.41 7.14 6.00 -92.71 -0.56 6.58 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 41 H -0.01 -0.61 8.01 -2.39 -0.02 -0.63 16 42 H 0.25 16.11 7.22 -92.70 -0.67 15.44 16 43 H 0.08 2.37 6.51 -2.39 -0.02 2.35 16 44 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 45 H 0.04 1.32 7.21 -2.39 -0.02 1.30 16 Total: -1.00 -79.16 357.53 2.03 -77.13 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.52 Total: 12.90 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 6.64 Total: 3.81 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -7.09 Total: -105.27 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.10 Total: -39.42 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.05 Total: 50.84 kcal Total: -79.16 2.03 -77.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488954571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.940 kcal (2) G-P(sol) polarization free energy of solvation -79.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds