Wall clock time and date at job start Tue Mar 31 2020 03:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46972 * 2 1 4 4 C 1.52994 * 109.47219 * 240.00298 * 2 1 3 5 5 N 1.46902 * 109.46841 * 185.00369 * 4 2 1 6 6 N 1.46496 * 109.46897 * 119.99654 * 2 1 3 7 7 C 1.34782 * 120.00667 * 275.00222 * 6 2 1 8 8 O 1.21351 * 119.99633 * 0.02562 * 7 6 2 9 9 C 1.49447 * 120.00286 * 180.02562 * 7 6 2 10 10 O 1.21350 * 120.00175 * 353.22766 * 9 7 6 11 11 N 1.34770 * 119.99831 * 173.23018 * 9 7 6 12 12 C 1.46935 * 120.63100 * 171.35333 * 11 9 7 13 13 C 1.53188 * 108.89199 * 126.34428 * 12 11 9 14 14 C 1.53349 * 109.15302 * 54.57658 * 13 12 11 15 15 C 1.52997 * 109.41883 * 178.67254 * 14 13 12 16 16 C 1.50699 * 109.47269 * 295.12926 * 15 14 13 17 17 H 1.07995 * 120.00004 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99607 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00438 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99698 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47068 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46876 * 119.99919 * 20 18 16 23 23 H 1.48499 * 109.47191 * 240.00248 * 20 18 16 24 24 C 1.53040 * 109.60908 * 298.71414 * 14 13 12 25 25 C 1.46931 * 120.63406 * 351.37542 * 11 9 7 26 26 H 1.08996 * 109.46538 * 59.99806 * 1 2 3 27 27 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46889 * 300.00323 * 1 2 3 29 29 H 1.08998 * 109.46764 * 304.99423 * 4 2 1 30 30 H 1.08990 * 109.47439 * 64.99901 * 4 2 1 31 31 H 1.00904 * 110.99868 * 180.02562 * 5 4 2 32 32 H 1.00905 * 110.99701 * 303.94376 * 5 4 2 33 33 H 0.97003 * 119.99771 * 95.00316 * 6 2 1 34 34 H 1.08996 * 109.58464 * 246.20369 * 12 11 9 35 35 H 1.08998 * 109.58113 * 6.48631 * 12 11 9 36 36 H 1.08998 * 109.49719 * 174.66073 * 13 12 11 37 37 H 1.09006 * 109.49800 * 294.75663 * 13 12 11 38 38 H 1.09001 * 109.42119 * 58.75269 * 14 13 12 39 39 H 1.09004 * 109.47230 * 55.13355 * 15 14 13 40 40 H 1.09003 * 109.47311 * 175.12793 * 15 14 13 41 41 H 0.97007 * 120.00121 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.49455 * 301.41867 * 24 14 13 43 43 H 1.08995 * 109.52278 * 181.33992 * 24 14 13 44 44 H 1.08998 * 109.58283 * 353.37330 * 25 11 9 45 45 H 1.09004 * 109.58562 * 113.65591 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1903 6 7 2.0183 -0.6905 1.1962 7 6 2.1470 -0.0182 2.3572 8 8 1.8580 1.1591 2.4118 9 6 2.6457 -0.7226 3.5773 10 8 2.8178 -1.9237 3.5569 11 7 2.9042 -0.0239 4.7004 12 6 3.2119 -0.7168 5.9591 13 6 4.5364 -0.1795 6.5101 14 6 4.4476 1.3463 6.6346 15 6 5.7559 1.8863 7.2157 16 6 5.9280 1.3774 8.6236 17 1 5.1794 0.7329 9.0602 18 6 7.0418 1.7338 9.3540 19 7 7.9537 2.5181 8.8223 20 14 7.2549 1.1035 11.0997 21 1 6.0979 0.2455 11.4608 22 1 8.5066 0.3096 11.1899 23 1 7.3298 2.2540 12.0356 24 6 4.2109 1.9614 5.2534 25 6 2.8833 1.4452 4.6896 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6055 -1.7197 -1.2951 30 1 1.7518 -0.1583 -2.1369 31 1 3.8657 -1.2992 -2.0051 32 1 3.9281 0.0827 -1.0823 33 1 2.2491 -1.6317 1.1526 34 1 2.4153 -0.5348 6.6804 35 1 3.3003 -1.7874 5.7745 36 1 4.7272 -0.6174 7.4899 37 1 5.3467 -0.4420 5.8298 38 1 3.6213 1.6086 7.2953 39 1 6.5920 1.5495 6.6028 40 1 5.7274 2.9759 7.2241 41 1 8.7375 2.7685 9.3361 42 1 5.0244 1.6789 4.5851 43 1 4.1717 3.0472 5.3400 44 1 2.7574 1.8013 3.6672 45 1 2.0584 1.8035 5.3056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519659769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:51 Heat of formation + Delta-G solvation = -74.949372 kcal Electronic energy + Delta-G solvation = -24644.153455 eV Core-core repulsion = 21082.272666 eV Total energy + Delta-G solvation = -3561.880788 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88379 -38.97655 -37.39221 -36.92118 -34.09677 -33.38218 -32.04898 -30.93499 -30.67851 -28.21687 -25.77890 -25.12561 -24.01367 -22.65466 -21.76229 -20.97711 -20.27271 -19.03461 -17.52846 -17.19246 -16.44493 -16.20876 -15.81305 -15.79688 -15.20245 -14.63182 -14.51899 -14.15951 -14.09467 -14.00593 -13.65464 -13.21094 -12.99140 -12.78205 -12.73734 -12.62339 -12.35551 -12.08901 -11.82367 -11.32769 -11.19442 -11.14204 -10.91560 -10.69214 -10.67186 -10.39633 -10.14276 -9.60934 -9.44716 -9.37300 -9.18177 -9.06637 -8.76088 -8.36982 -8.32193 -5.97124 -3.98738 1.48179 2.37536 3.26441 3.32544 3.40350 3.43802 3.55056 4.01540 4.35686 4.39986 4.48148 4.68500 4.93855 5.00362 5.21568 5.25946 5.34290 5.38503 5.48538 5.55631 5.56736 5.61850 5.77072 5.80581 5.91822 6.04357 6.07918 6.35769 6.41229 6.44875 6.57180 6.62631 6.66631 6.95144 6.98937 7.04973 7.10021 7.16465 7.45527 7.70582 7.79216 7.85540 8.03056 8.07398 8.45912 9.08026 9.64996 11.14191 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.031455 B = 0.002877 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.949008 B = 9729.518789 C = 9839.788602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.090 0.910 4 C 0.052 3.948 5 N -0.849 5.849 6 N -0.682 5.682 7 C 0.511 3.489 8 O -0.517 6.517 9 C 0.503 3.497 10 O -0.533 6.533 11 N -0.570 5.570 12 C 0.104 3.896 13 C -0.116 4.116 14 C -0.083 4.083 15 C 0.027 3.973 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.129 4.129 25 C 0.070 3.930 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.345 0.655 32 H 0.344 0.656 33 H 0.416 0.584 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.131 0.869 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.093 -5.368 -20.449 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.108 0.892 4 C -0.080 4.080 5 N -0.379 5.379 6 N -0.335 5.335 7 C 0.293 3.707 8 O -0.394 6.394 9 C 0.285 3.715 10 O -0.411 6.411 11 N -0.302 5.302 12 C -0.017 4.017 13 C -0.154 4.154 14 C -0.102 4.102 15 C -0.010 4.010 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.167 4.167 25 C -0.051 4.051 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.252 0.748 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.148 0.852 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.172 -5.517 -19.724 24.906 hybrid contribution 0.397 -0.054 0.213 0.454 sum -13.775 -5.571 -19.510 24.524 Atomic orbital electron populations 1.22168 0.94457 1.02643 1.03070 1.21091 0.94257 0.97502 0.83658 0.89194 1.22114 0.89235 1.01000 0.95602 1.58634 1.04753 1.26755 1.47774 1.45664 1.64664 1.15122 1.08011 1.20312 0.78772 0.86807 0.84785 1.90507 1.49342 1.15425 1.84137 1.19943 0.79911 0.87190 0.84440 1.90728 1.52453 1.14341 1.83530 1.48073 1.65024 1.08431 1.08698 1.21950 0.98672 0.97663 0.83438 1.21942 0.94568 0.97205 1.01724 1.21281 1.01250 0.93641 0.93999 1.19129 0.90534 0.96041 0.95266 1.21289 1.05579 1.29658 0.98756 0.92538 1.25025 0.96111 0.95275 0.98109 1.69974 1.10574 1.35932 1.37065 0.86593 0.78015 0.78658 0.85073 1.19746 1.21113 1.21116 1.22038 0.95959 1.00530 0.98221 1.22889 0.98429 0.77405 1.06343 0.91345 0.92049 0.91441 0.90183 0.93740 0.84210 0.84300 0.74756 0.91290 0.89490 0.89585 0.92244 0.92341 0.96648 0.96587 0.93141 0.92262 0.90993 0.85193 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 2 C 0.14 1.09 2.81 -67.93 -0.19 0.90 16 3 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 4 C 0.05 0.29 6.34 -3.83 -0.02 0.27 16 5 N -0.85 -5.39 9.35 -10.37 -0.10 -5.49 16 6 N -0.68 -7.03 4.79 -54.24 -0.26 -7.29 16 7 C 0.51 6.85 7.70 -11.58 -0.09 6.76 16 8 O -0.52 -7.50 12.85 5.50 0.07 -7.43 16 9 C 0.50 7.84 7.73 -11.59 -0.09 7.75 16 10 O -0.53 -9.15 15.93 5.50 0.09 -9.06 16 11 N -0.57 -9.07 2.97 -173.27 -0.52 -9.58 16 12 C 0.10 1.68 6.43 -3.71 -0.02 1.66 16 13 C -0.12 -2.18 5.21 -26.45 -0.14 -2.32 16 14 C -0.08 -1.67 2.10 -90.42 -0.19 -1.86 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 16 C -0.51 -14.23 8.39 -34.44 -0.29 -14.52 16 17 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 C -0.13 -2.25 5.36 -26.61 -0.14 -2.39 16 25 C 0.07 1.08 5.98 -3.71 -0.02 1.06 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.35 1.60 9.08 -39.29 -0.36 1.24 16 32 H 0.34 2.18 8.99 -39.29 -0.35 1.83 16 33 H 0.42 4.24 8.09 -40.82 -0.33 3.91 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 36 H 0.09 1.69 6.93 -51.93 -0.36 1.33 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.13 1.99 4.32 -54.77 -0.24 1.75 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -31.92 360.70 -8.03 -39.95 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.39 Total: 4.47 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.07 Total: -1.41 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.14 Total: -48.57 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.16 Total: -16.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.92 -8.03 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519659769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.998 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds