Wall clock time and date at job start Tue Mar 31 2020 03:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 O 1.21281 * 120.00071 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00107 * 179.97438 * 4 3 2 7 7 C 1.47076 * 120.88316 * 359.71927 * 6 4 3 8 8 C 1.53692 * 108.27869 * 128.75586 * 7 6 4 9 9 N 1.46900 * 109.25611 * 54.08507 * 8 7 6 10 10 C 1.46898 * 111.00138 * 172.60959 * 9 8 7 11 11 C 1.46900 * 111.26919 * 296.75756 * 9 8 7 12 12 C 1.47081 * 120.88140 * 180.02562 * 6 4 3 13 13 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 14 14 O 1.21279 * 119.99925 * 179.72608 * 13 2 1 15 15 C 1.50700 * 119.99961 * 359.72839 * 13 2 1 16 16 C 1.52992 * 109.47257 * 180.02562 * 15 13 2 17 17 C 1.50700 * 109.47257 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99988 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00045 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00037 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00274 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46754 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47725 * 119.99421 * 21 19 17 24 24 H 1.48500 * 109.46950 * 239.99755 * 21 19 17 25 25 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 26 26 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 27 27 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 28 28 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 29 29 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 30 30 H 1.09007 * 109.63152 * 248.52762 * 7 6 4 31 31 H 1.09005 * 109.62448 * 9.10216 * 7 6 4 32 32 H 1.09000 * 109.64645 * 294.08242 * 8 7 6 33 33 H 1.09000 * 109.44085 * 173.96419 * 8 7 6 34 34 H 1.08998 * 109.47111 * 184.30306 * 10 9 8 35 35 H 1.08997 * 109.46933 * 304.30318 * 10 9 8 36 36 H 1.09003 * 109.47381 * 64.30007 * 10 9 8 37 37 H 1.09008 * 109.49305 * 303.14797 * 11 9 8 38 38 H 1.08997 * 109.51313 * 183.07890 * 11 9 8 39 39 H 1.09002 * 109.62909 * 350.89610 * 12 6 4 40 40 H 1.09002 * 109.62906 * 111.27856 * 12 6 4 41 41 H 1.09004 * 109.46932 * 300.00223 * 15 13 2 42 42 H 1.08997 * 109.47392 * 59.99562 * 15 13 2 43 43 H 1.09004 * 109.47330 * 299.99977 * 16 15 13 44 44 H 1.09005 * 109.47124 * 59.99773 * 16 15 13 45 45 H 0.97000 * 120.00297 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 8 2.0453 1.0265 -2.3426 6 7 3.1040 2.8554 -1.6670 7 6 3.5892 3.6986 -0.5640 8 6 5.0764 4.0009 -0.8065 9 7 5.2411 4.5779 -2.1474 10 6 6.6189 5.0432 -2.3548 11 6 4.8454 3.6227 -3.1909 12 6 3.3536 3.3020 -3.0460 13 6 2.1388 -1.1673 -0.0056 14 8 3.3516 -1.1673 -0.0106 15 6 1.3853 -2.4724 -0.0056 16 6 2.3794 -3.6353 -0.0118 17 6 1.6259 -4.9403 -0.0112 18 1 0.5459 -4.9403 -0.0064 19 6 2.3152 -6.1344 -0.0157 20 7 3.6304 -6.1344 -0.0210 21 14 1.3813 -7.7521 -0.0157 22 1 -0.0788 -7.4807 -0.0098 23 1 1.7358 -8.5286 -1.2308 24 1 1.7441 -8.5331 1.1941 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3634 0.8924 -0.5096 27 1 -0.3634 -0.8874 -0.5181 28 1 1.6106 2.0271 0.5181 29 1 3.1521 1.1371 0.5096 30 1 3.0227 4.6295 -0.5381 31 1 3.4713 3.1686 0.3812 32 1 5.6543 3.0796 -0.7335 33 1 5.4288 4.7116 -0.0589 34 1 6.6945 5.5342 -3.3249 35 1 6.8862 5.7491 -1.5685 36 1 7.2985 4.1915 -2.3247 37 1 5.4265 2.7065 -3.0846 38 1 5.0300 4.0587 -4.1726 39 1 3.0798 2.5097 -3.7427 40 1 2.7622 4.1935 -3.2548 41 1 0.7623 -2.5322 0.8868 42 1 0.7549 -2.5280 -0.8930 43 1 3.0028 -3.5756 -0.9040 44 1 3.0094 -3.5794 0.8760 45 1 4.1154 -6.9745 -0.0246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589795576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:53 Heat of formation + Delta-G solvation = -55.920673 kcal Electronic energy + Delta-G solvation = -24572.507113 eV Core-core repulsion = 21011.451471 eV Total energy + Delta-G solvation = -3561.055642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50488 -39.22193 -37.95233 -35.08836 -34.78488 -33.45256 -31.76243 -31.03594 -29.46000 -28.15611 -26.37811 -25.27108 -24.54489 -23.89416 -21.91416 -21.07773 -19.28546 -18.45824 -17.54632 -16.98002 -16.37341 -15.88939 -15.57039 -15.51212 -15.29647 -15.21408 -14.91009 -14.81496 -14.36255 -13.70877 -13.64120 -13.08739 -13.01057 -12.82860 -12.49982 -12.27475 -12.18789 -12.15660 -12.06247 -11.88883 -11.64760 -11.56587 -11.40610 -11.05801 -10.91492 -10.53606 -10.01442 -9.89018 -9.58707 -9.14839 -9.04788 -8.97286 -8.61980 -8.43780 -8.27852 -5.92076 -3.96022 2.57300 2.65185 3.29759 3.32688 3.35462 3.42483 3.46197 3.53673 4.34331 4.50599 4.55396 4.60878 4.77176 4.85008 4.89900 4.99285 5.08422 5.18321 5.21730 5.23041 5.25022 5.32041 5.42916 5.49167 5.49829 5.54045 5.59847 5.66431 5.73614 5.83172 6.23394 6.28158 6.31900 6.54477 6.59898 6.63108 6.93390 7.23865 7.70715 7.79374 7.91860 8.11777 8.12589 8.43051 8.75590 9.12536 9.67165 11.19054 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.002920 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.102924 B = 9586.444476 C =10091.935763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.614 5.614 3 C 0.100 3.900 4 C 0.499 3.501 5 O -0.523 6.523 6 N -0.620 5.620 7 C 0.113 3.887 8 C 0.037 3.963 9 N -0.543 5.543 10 C 0.025 3.975 11 C 0.040 3.960 12 C 0.118 3.882 13 C 0.518 3.482 14 O -0.533 6.533 15 C -0.125 4.125 16 C 0.037 3.963 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 26.518 -0.888 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.349 5.349 3 C -0.028 4.028 4 C 0.286 3.714 5 O -0.397 6.397 6 N -0.357 5.357 7 C -0.010 4.010 8 C -0.092 4.092 9 N -0.268 5.268 10 C -0.124 4.124 11 C -0.089 4.089 12 C -0.005 4.005 13 C 0.309 3.691 14 O -0.408 6.408 15 C -0.165 4.165 16 C -0.001 4.001 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.743 26.371 -1.415 26.419 hybrid contribution 0.184 -1.392 -0.007 1.404 sum -0.558 24.979 -1.422 25.025 Atomic orbital electron populations 1.21733 0.79122 1.03452 1.01339 1.47723 1.06968 1.04604 1.75642 1.21208 1.00283 0.87887 0.93393 1.21485 0.77337 0.79737 0.92831 1.90714 1.50060 1.52751 1.46190 1.48221 1.57557 1.22685 1.07238 1.21928 0.93996 0.95312 0.89809 1.22605 0.96458 0.98998 0.91158 1.61965 1.23783 1.38637 1.02418 1.22369 0.87778 0.99585 1.02620 1.22526 0.96163 0.94586 0.95638 1.21638 0.94699 1.00450 0.83726 1.21625 0.88392 0.85447 0.73628 1.90643 1.14516 1.87183 1.48468 1.21870 1.00699 0.91553 1.02388 1.18915 0.93213 0.89424 0.98551 1.21260 0.92974 0.90974 1.51038 0.92526 1.25030 0.94825 0.99228 0.95376 1.70013 1.06062 1.26396 1.50447 0.86533 0.80028 0.83851 0.77539 1.19729 1.21039 1.21048 0.92619 0.91868 0.90234 0.88042 0.87168 0.90329 0.89235 0.93814 0.89356 0.91179 0.91181 0.95436 0.94013 0.89494 0.88659 0.90897 0.90194 0.90042 0.95869 0.95874 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 10.24 59.84 0.61 1.65 16 2 N -0.61 -9.75 2.36 -182.96 -0.43 -10.18 16 3 C 0.10 1.28 4.25 -5.20 -0.02 1.26 16 4 C 0.50 7.31 7.78 -10.99 -0.09 7.23 16 5 O -0.52 -9.98 15.88 5.56 0.09 -9.89 16 6 N -0.62 -7.02 3.00 -172.16 -0.52 -7.54 16 7 C 0.11 0.88 6.53 -3.37 -0.02 0.86 16 8 C 0.04 0.29 5.64 -3.46 -0.02 0.27 16 9 N -0.54 -4.56 4.88 -242.29 -1.18 -5.74 16 10 C 0.02 0.17 9.58 60.06 0.58 0.74 16 11 C 0.04 0.37 5.62 -3.68 -0.02 0.35 16 12 C 0.12 1.24 6.60 -3.58 -0.02 1.21 16 13 C 0.52 10.85 7.67 -10.98 -0.08 10.76 16 14 O -0.53 -13.22 15.56 5.56 0.09 -13.13 16 15 C -0.13 -2.72 4.20 -27.89 -0.12 -2.84 16 16 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 17 C -0.52 -15.29 9.11 -34.44 -0.31 -15.61 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -28.05 13.29 55.43 0.74 -27.31 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 27 H 0.08 1.00 6.44 -51.93 -0.33 0.67 16 28 H 0.10 0.86 7.92 -51.93 -0.41 0.45 16 29 H 0.11 1.47 6.95 -51.93 -0.36 1.11 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.57 6.02 -51.93 -0.31 0.26 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.10 1.18 7.06 -51.93 -0.37 0.82 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 42 H 0.08 1.68 7.39 -51.93 -0.38 1.29 16 43 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -38.41 364.23 -8.10 -46.51 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -7.61 Total: -3.68 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 0.26 Total: 8.39 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -1.40 Total: -50.78 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.41 -8.10 -46.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589795576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.416 kcal (2) G-P(sol) polarization free energy of solvation -38.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds