Wall clock time and date at job start Tue Mar 31 2020 03:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 O 1.21281 * 120.00071 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00107 * 179.97438 * 4 3 2 7 7 C 1.47076 * 120.88316 * 359.71927 * 6 4 3 8 8 C 1.53692 * 108.27869 * 128.75586 * 7 6 4 9 9 N 1.46900 * 109.25611 * 54.08507 * 8 7 6 10 10 C 1.46898 * 111.00138 * 172.60959 * 9 8 7 11 11 C 1.46900 * 111.26919 * 296.75756 * 9 8 7 12 12 C 1.47081 * 120.88140 * 180.02562 * 6 4 3 13 13 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 14 14 O 1.21279 * 119.99925 * 179.72608 * 13 2 1 15 15 C 1.50700 * 119.99961 * 359.72839 * 13 2 1 16 16 C 1.52992 * 109.47257 * 180.02562 * 15 13 2 17 17 C 1.50700 * 109.47257 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99988 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00045 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00037 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00274 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46754 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47725 * 119.99421 * 21 19 17 24 24 H 1.48500 * 109.46950 * 239.99755 * 21 19 17 25 25 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 26 26 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 27 27 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 28 28 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 29 29 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 30 30 H 1.09007 * 109.63152 * 248.52762 * 7 6 4 31 31 H 1.09005 * 109.62448 * 9.10216 * 7 6 4 32 32 H 1.09000 * 109.64645 * 294.08242 * 8 7 6 33 33 H 1.09000 * 109.44085 * 173.96419 * 8 7 6 34 34 H 1.08998 * 109.47111 * 184.30306 * 10 9 8 35 35 H 1.08997 * 109.46933 * 304.30318 * 10 9 8 36 36 H 1.09003 * 109.47381 * 64.30007 * 10 9 8 37 37 H 1.09008 * 109.49305 * 303.14797 * 11 9 8 38 38 H 1.08997 * 109.51313 * 183.07890 * 11 9 8 39 39 H 1.09002 * 109.62909 * 350.89610 * 12 6 4 40 40 H 1.09002 * 109.62906 * 111.27856 * 12 6 4 41 41 H 1.09004 * 109.46932 * 300.00223 * 15 13 2 42 42 H 1.08997 * 109.47392 * 59.99562 * 15 13 2 43 43 H 1.09004 * 109.47330 * 299.99977 * 16 15 13 44 44 H 1.09005 * 109.47124 * 59.99773 * 16 15 13 45 45 H 0.97000 * 120.00297 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 8 2.0453 1.0265 -2.3426 6 7 3.1040 2.8554 -1.6670 7 6 3.5892 3.6986 -0.5640 8 6 5.0764 4.0009 -0.8065 9 7 5.2411 4.5779 -2.1474 10 6 6.6189 5.0432 -2.3548 11 6 4.8454 3.6227 -3.1909 12 6 3.3536 3.3020 -3.0460 13 6 2.1388 -1.1673 -0.0056 14 8 3.3516 -1.1673 -0.0106 15 6 1.3853 -2.4724 -0.0056 16 6 2.3794 -3.6353 -0.0118 17 6 1.6259 -4.9403 -0.0112 18 1 0.5459 -4.9403 -0.0064 19 6 2.3152 -6.1344 -0.0157 20 7 3.6304 -6.1344 -0.0210 21 14 1.3813 -7.7521 -0.0157 22 1 -0.0788 -7.4807 -0.0098 23 1 1.7358 -8.5286 -1.2308 24 1 1.7441 -8.5331 1.1941 25 1 -0.3634 -0.0049 1.0276 26 1 -0.3634 0.8924 -0.5096 27 1 -0.3634 -0.8874 -0.5181 28 1 1.6106 2.0271 0.5181 29 1 3.1521 1.1371 0.5096 30 1 3.0227 4.6295 -0.5381 31 1 3.4713 3.1686 0.3812 32 1 5.6543 3.0796 -0.7335 33 1 5.4288 4.7116 -0.0589 34 1 6.6945 5.5342 -3.3249 35 1 6.8862 5.7491 -1.5685 36 1 7.2985 4.1915 -2.3247 37 1 5.4265 2.7065 -3.0846 38 1 5.0300 4.0587 -4.1726 39 1 3.0798 2.5097 -3.7427 40 1 2.7622 4.1935 -3.2548 41 1 0.7623 -2.5322 0.8868 42 1 0.7549 -2.5280 -0.8930 43 1 3.0028 -3.5756 -0.9040 44 1 3.0094 -3.5794 0.8760 45 1 4.1154 -6.9745 -0.0246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589795576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:52 Heat of formation + Delta-G solvation = -84.994714 kcal Electronic energy + Delta-G solvation = -24573.767858 eV Core-core repulsion = 21011.451471 eV Total energy + Delta-G solvation = -3562.316387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61367 -40.53629 -38.97980 -36.46471 -35.69452 -35.61677 -33.18065 -32.40470 -30.48822 -29.12397 -27.92151 -26.81379 -25.31848 -24.77817 -23.54785 -22.26367 -20.42470 -19.77703 -18.85236 -18.54975 -17.73034 -17.40977 -16.76643 -16.49733 -16.41231 -16.29743 -16.15177 -15.85804 -15.70903 -14.96792 -14.70261 -14.42373 -14.23173 -14.13721 -13.73875 -13.69219 -13.37506 -13.26323 -13.08489 -12.90605 -12.85493 -12.79121 -12.43092 -12.36047 -12.33096 -12.14036 -11.95932 -11.61142 -11.30739 -11.18272 -10.77898 -10.59378 -9.91055 -9.69917 -9.39081 -8.19477 -6.33866 1.40629 1.42960 1.44060 1.53873 1.56445 1.86212 2.16762 2.42406 2.86793 3.13295 3.44472 3.74617 3.84384 3.89904 4.05164 4.14464 4.19705 4.25022 4.26785 4.32435 4.44182 4.46770 4.49356 4.58764 4.60983 4.67639 4.73994 4.78016 4.79207 4.89658 4.99014 5.00969 5.07052 5.34466 5.45363 5.51329 5.59673 5.82567 5.88268 5.93135 6.15556 6.28273 6.29305 6.84111 7.04332 7.20901 7.36347 8.93746 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.002920 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.102924 B = 9586.444476 C =10091.935763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.604 5.604 3 C 0.097 3.903 4 C 0.492 3.508 5 O -0.580 6.580 6 N -0.615 5.615 7 C 0.108 3.892 8 C 0.034 3.966 9 N -0.542 5.542 10 C 0.024 3.976 11 C 0.045 3.955 12 C 0.116 3.884 13 C 0.513 3.487 14 O -0.588 6.588 15 C -0.114 4.114 16 C 0.044 3.956 17 C -0.542 4.542 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.939 5.939 21 Si 0.977 3.023 22 H -0.252 1.252 23 H -0.281 1.281 24 H -0.277 1.277 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.018 0.982 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.016 0.984 37 H 0.012 0.988 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.094 0.906 43 H -0.026 1.026 44 H -0.014 1.014 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 28.450 0.255 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.337 5.337 3 C -0.029 4.029 4 C 0.280 3.720 5 O -0.459 6.459 6 N -0.350 5.350 7 C -0.014 4.014 8 C -0.094 4.094 9 N -0.267 5.267 10 C -0.124 4.124 11 C -0.084 4.084 12 C -0.007 4.007 13 C 0.304 3.696 14 O -0.468 6.468 15 C -0.154 4.154 16 C 0.006 3.994 17 C -0.580 4.580 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.800 3.200 22 H -0.175 1.175 23 H -0.207 1.207 24 H -0.203 1.203 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.176 0.824 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.036 0.964 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.112 0.888 43 H -0.008 1.008 44 H 0.004 0.996 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.177 28.401 -0.250 28.579 hybrid contribution 0.983 -1.843 -0.376 2.122 sum -2.194 26.558 -0.626 26.656 Atomic orbital electron populations 1.22066 0.76352 1.04291 1.03695 1.47656 1.08715 1.04117 1.73200 1.21535 1.00903 0.87599 0.92842 1.21803 0.77197 0.80081 0.92913 1.90691 1.52865 1.54637 1.47715 1.48343 1.56009 1.22032 1.08602 1.22266 0.94021 0.95918 0.89178 1.22697 0.96347 0.98649 0.91726 1.62041 1.24735 1.37687 1.02230 1.22444 0.86595 0.99469 1.03895 1.22456 0.94896 0.93879 0.97158 1.21683 0.95773 1.00203 0.83011 1.21407 0.87658 0.86849 0.73729 1.90617 1.16637 1.88100 1.51450 1.21622 0.99297 0.90080 1.04359 1.18683 0.93649 0.92600 0.94428 1.21729 0.94011 0.91493 1.50732 0.90537 1.26183 0.95771 1.04084 0.94563 1.70195 1.08386 1.27774 1.51524 0.85230 0.79304 0.77834 0.77610 1.17507 1.20738 1.20291 0.89296 0.89586 0.91048 0.82402 0.87788 0.87683 0.87548 0.96379 0.86554 0.90207 0.89490 0.96564 0.96926 0.87718 0.91336 0.88790 0.87213 0.88788 1.00788 0.99586 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 10.24 127.77 1.31 2.93 16 2 N -0.60 -18.44 2.36 -851.16 -2.01 -20.45 16 3 C 0.10 2.34 4.25 85.63 0.36 2.71 16 4 C 0.49 14.28 7.78 87.65 0.68 14.96 16 5 O -0.58 -22.83 15.88 -3.03 -0.05 -22.88 16 6 N -0.62 -13.38 3.00 -816.97 -2.45 -15.83 16 7 C 0.11 1.40 6.53 86.50 0.57 1.97 16 8 C 0.03 0.49 5.64 86.54 0.49 0.98 16 9 N -0.54 -8.26 4.88 -920.46 -4.49 -12.75 16 10 C 0.02 0.28 9.58 127.69 1.22 1.51 16 11 C 0.05 0.83 5.62 86.40 0.49 1.32 16 12 C 0.12 2.42 6.60 86.36 0.57 2.99 16 13 C 0.51 21.96 7.67 87.66 0.67 22.63 16 14 O -0.59 -30.86 15.56 -3.03 -0.05 -30.91 16 15 C -0.11 -5.01 4.20 29.85 0.13 -4.89 16 16 C 0.04 2.60 4.26 29.85 0.13 2.72 16 17 C -0.54 -32.08 9.11 25.60 0.23 -31.85 16 18 H 0.08 4.13 7.74 -2.91 -0.02 4.10 16 19 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 20 N -0.94 -61.30 13.29 21.45 0.28 -61.02 16 21 Si 0.98 45.53 29.54 68.60 2.03 47.55 16 22 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.46 8.07 -2.39 -0.02 1.44 16 27 H 0.07 1.64 6.44 -2.39 -0.02 1.63 16 28 H 0.16 1.97 7.92 -2.39 -0.02 1.95 16 29 H 0.10 2.70 6.95 -2.38 -0.02 2.69 16 30 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.11 1.03 6.02 -2.38 -0.01 1.02 16 32 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.12 1.02 8.06 -2.39 -0.02 1.00 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.76 8.08 -2.39 -0.02 0.75 16 36 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 38 H 0.10 1.53 8.11 -2.39 -0.02 1.51 16 39 H 0.07 1.81 7.06 -2.39 -0.02 1.79 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.11 4.11 8.11 -2.38 -0.02 4.09 16 42 H 0.09 3.87 7.39 -2.39 -0.02 3.85 16 43 H -0.03 -1.78 8.10 -2.38 -0.02 -1.80 16 44 H -0.01 -0.93 8.10 -2.38 -0.02 -0.95 16 45 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -90.39 364.23 1.52 -88.86 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.96 Total: 9.52 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 7.31 Total: 17.91 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -8.67 Total: -110.06 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.10 Total: -53.79 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -90.39 1.52 -88.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589795576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.868 kcal (2) G-P(sol) polarization free energy of solvation -90.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds