Wall clock time and date at job start Tue Mar 31 2020 03:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99773 * 2 1 4 4 C 1.53234 * 109.34110 * 187.25528 * 3 2 1 5 5 N 1.47083 * 108.52139 * 306.17194 * 4 3 2 6 6 C 1.34774 * 120.88058 * 231.18802 * 5 4 3 7 7 O 1.21276 * 120.00109 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99942 * 179.97438 * 6 5 4 9 9 N 1.46902 * 109.47094 * 186.02190 * 8 6 5 10 10 C 1.47437 * 111.00035 * 176.65462 * 9 8 6 11 11 C 1.54321 * 107.23607 * 236.74296 * 10 9 8 12 12 C 1.55138 * 103.17151 * 337.63146 * 11 10 9 13 13 O 1.42908 * 110.98852 * 277.64608 * 12 11 10 14 14 C 1.50703 * 110.98952 * 153.83446 * 12 11 10 15 15 H 1.08004 * 119.99474 * 241.44640 * 14 12 11 16 16 C 1.37870 * 120.00196 * 61.44963 * 14 12 11 17 17 N 1.31515 * 119.99951 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00035 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47352 * 89.99922 * 18 16 14 20 20 H 1.48504 * 109.46943 * 209.99836 * 18 16 14 21 21 H 1.48497 * 109.47225 * 329.99833 * 18 16 14 22 22 C 1.47841 * 110.99874 * 55.81039 * 9 8 6 23 23 C 1.47086 * 118.23832 * 51.45456 * 5 4 3 24 24 C 1.46890 * 111.00309 * 124.30064 * 2 1 3 25 25 H 1.09000 * 109.47381 * 59.99934 * 1 2 3 26 26 H 1.09004 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47232 * 299.99475 * 1 2 3 28 28 H 1.09007 * 109.49095 * 67.29489 * 3 2 1 29 29 H 1.08998 * 109.51479 * 307.22985 * 3 2 1 30 30 H 1.09001 * 109.62994 * 186.46101 * 4 3 2 31 31 H 1.09001 * 109.62976 * 65.87819 * 4 3 2 32 32 H 1.09004 * 109.46870 * 66.02200 * 8 6 5 33 33 H 1.08997 * 109.47071 * 306.02485 * 8 6 5 34 34 H 1.09002 * 109.89254 * 117.33612 * 10 9 8 35 35 H 1.09006 * 109.88972 * 356.15086 * 10 9 8 36 36 H 1.09002 * 110.70316 * 96.09861 * 11 10 9 37 37 H 1.08994 * 110.70668 * 219.15692 * 11 10 9 38 38 H 0.96701 * 113.99570 * 298.54637 * 13 12 11 39 39 H 0.97011 * 119.99680 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.37401 * 265.19316 * 22 9 8 41 41 H 1.08998 * 110.37467 * 27.53517 * 22 9 8 42 42 H 1.08995 * 109.62458 * 68.25286 * 23 5 4 43 43 H 1.08991 * 109.62744 * 188.83579 * 23 5 4 44 44 H 1.09000 * 109.49909 * 292.71324 * 24 2 1 45 45 H 1.09004 * 109.49295 * 52.76314 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5163 1.3313 -0.1826 5 7 4.0869 0.4461 0.8441 6 6 5.1055 0.8585 1.6245 7 8 5.5640 1.9725 1.4847 8 6 5.6747 -0.0648 2.6708 9 7 6.6661 0.6603 3.4766 10 6 7.1875 -0.1893 4.5629 11 6 6.9263 0.5537 5.8900 12 6 6.7878 2.0335 5.4452 13 8 8.0707 2.6438 5.2906 14 6 5.9358 2.8111 6.4151 15 1 5.0144 3.2648 6.0809 16 6 6.3326 2.9434 7.7288 17 7 7.4544 2.3906 8.1357 18 14 5.2762 3.9067 8.9311 19 1 4.3017 2.9914 9.5774 20 1 6.1425 4.5207 9.9694 21 1 4.5447 4.9740 8.2024 22 6 6.0761 1.8776 4.0729 23 6 3.5205 -0.9031 0.9926 24 6 1.9955 -0.7728 1.1328 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.7554 1.8532 0.9480 29 1 1.5456 1.9341 -0.8180 30 1 3.9254 2.3353 -0.0690 31 1 3.7561 0.9451 -1.1733 32 1 6.1534 -0.9145 2.1838 33 1 4.8720 -0.4210 3.3164 34 1 8.2580 -0.3459 4.4300 35 1 6.6680 -1.1477 4.5660 36 1 6.0043 0.2025 6.3532 37 1 7.7685 0.4332 6.5713 38 1 8.5935 2.6715 6.1036 39 1 7.7334 2.4834 9.0602 40 1 6.2751 2.7440 3.4420 41 1 5.0030 1.7489 4.2147 42 1 3.7606 -1.4998 0.1127 43 1 3.9323 -1.3770 1.8835 44 1 1.7555 -0.2614 2.0650 45 1 1.5454 -1.7655 1.1364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:49 Heat of formation + Delta-G solvation = -54.207966 kcal Electronic energy + Delta-G solvation = -25453.908303 eV Core-core repulsion = 21892.926929 eV Total energy + Delta-G solvation = -3560.981373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25787 -38.55335 -37.47593 -34.64520 -34.51319 -32.08379 -31.63324 -30.20201 -28.76710 -28.01382 -26.31257 -24.65031 -24.26679 -23.54707 -21.32207 -20.08548 -19.59753 -18.83982 -17.12586 -16.96396 -15.96228 -15.59282 -15.44284 -15.17193 -15.10940 -14.84407 -14.67066 -14.32653 -14.02176 -13.70036 -13.20669 -12.95115 -12.87356 -12.34686 -12.30798 -12.09256 -11.89906 -11.67901 -11.52320 -11.44138 -11.32829 -11.28297 -11.19795 -10.85791 -10.72378 -10.42057 -10.26829 -9.83606 -9.46335 -9.05153 -8.90002 -8.55829 -8.48046 -8.01438 -7.55868 -6.17226 -4.24917 2.85234 2.90712 3.22861 3.30482 3.35254 3.60782 4.31797 4.44997 4.64842 4.69394 4.75208 4.89910 4.96805 5.08035 5.10719 5.17708 5.24844 5.32483 5.37500 5.48475 5.51249 5.53541 5.61054 5.67645 5.72655 5.85182 6.00321 6.08792 6.20594 6.41603 6.50048 6.63748 6.67906 6.77293 6.98069 7.20011 7.38394 7.45762 7.54483 7.66600 7.75178 7.86289 8.23902 8.42464 8.77566 9.43673 9.60659 10.89673 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.003934 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.200585 B = 7115.410177 C = 7782.449517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.040 3.960 4 C 0.119 3.881 5 N -0.624 5.624 6 C 0.515 3.485 7 O -0.510 6.510 8 C 0.035 3.965 9 N -0.512 5.512 10 C 0.043 3.957 11 C -0.145 4.145 12 C 0.250 3.750 13 O -0.576 6.576 14 C -0.533 4.533 15 H 0.059 0.941 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.068 3.932 23 C 0.113 3.887 24 C 0.038 3.962 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.375 0.625 39 H 0.266 0.734 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.041 0.959 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 -9.629 -13.515 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.089 4.089 4 C -0.004 4.004 5 N -0.362 5.362 6 C 0.303 3.697 7 O -0.383 6.383 8 C -0.096 4.096 9 N -0.237 5.237 10 C -0.084 4.084 11 C -0.184 4.184 12 C 0.209 3.791 13 O -0.384 6.384 14 C -0.572 4.572 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.059 4.059 23 C -0.010 4.010 24 C -0.091 4.091 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.224 0.776 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.059 0.941 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.554 -9.052 -14.808 20.313 hybrid contribution -1.556 0.334 2.610 3.057 sum -12.110 -8.718 -12.198 19.273 Atomic orbital electron populations 1.22367 0.86975 1.02149 1.00830 1.61955 1.07913 1.13852 1.43108 1.22529 0.95659 0.89270 1.01405 1.21603 0.91433 0.96250 0.91156 1.48216 1.35505 1.15297 1.37135 1.20751 0.78860 0.88293 0.81753 1.90719 1.58564 1.20670 1.68352 1.22221 0.95602 0.96453 0.95354 1.63528 1.31904 1.05871 1.22355 1.22883 0.99769 0.94232 0.91501 1.23267 1.01717 0.98825 0.94641 1.19667 0.82152 0.88000 0.89247 1.86182 1.30522 1.82933 1.38719 1.21540 1.07570 1.33980 0.94111 0.92275 1.24985 0.95129 0.94814 0.98125 1.69747 1.21946 1.44299 1.17462 0.86495 0.80163 0.80218 0.80533 1.20663 1.20988 1.19781 1.23081 0.94995 0.91988 0.95824 1.21900 0.92304 0.84012 1.02817 1.22603 0.95412 0.98929 0.92148 0.91207 0.91250 0.95552 0.94149 0.89575 0.88525 0.91031 0.88575 0.92750 0.91250 0.94530 0.92727 0.90279 0.77627 0.92442 0.89666 0.94608 0.90521 0.89220 0.94059 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.58 60.06 0.58 0.76 16 2 N -0.54 -5.00 4.88 -242.31 -1.18 -6.19 16 3 C 0.04 0.40 5.62 -3.70 -0.02 0.38 16 4 C 0.12 1.38 6.60 -3.60 -0.02 1.35 16 5 N -0.62 -8.06 3.00 -172.18 -0.52 -8.58 16 6 C 0.52 8.66 7.27 -10.98 -0.08 8.58 16 7 O -0.51 -10.75 13.76 5.56 0.08 -10.67 16 8 C 0.04 0.57 3.54 -4.97 -0.02 0.55 16 9 N -0.51 -10.61 5.07 -232.37 -1.18 -11.79 16 10 C 0.04 0.86 6.90 -2.84 -0.02 0.84 16 11 C -0.15 -3.40 5.36 -24.91 -0.13 -3.54 16 12 C 0.25 6.52 0.88 -89.38 -0.08 6.44 16 13 O -0.58 -15.93 13.16 -35.23 -0.46 -16.39 16 14 C -0.53 -14.86 8.28 -34.44 -0.29 -15.15 16 15 H 0.06 1.66 7.79 -52.48 -0.41 1.25 16 16 C 0.07 1.94 5.29 -17.82 -0.09 1.85 16 17 N -0.90 -24.28 10.74 55.43 0.60 -23.69 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.07 1.62 4.48 -2.05 -0.01 1.62 16 23 C 0.11 1.07 6.54 -3.36 -0.02 1.05 16 24 C 0.04 0.34 5.64 -3.47 -0.02 0.32 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 30 H 0.10 1.29 7.06 -51.93 -0.37 0.92 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.04 0.61 7.58 -51.93 -0.39 0.22 16 36 H 0.05 1.29 8.03 -51.93 -0.42 0.87 16 37 H 0.08 1.95 7.53 -51.93 -0.39 1.56 16 38 H 0.37 10.25 7.56 45.56 0.34 10.59 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.09 2.26 6.94 -51.93 -0.36 1.90 16 41 H 0.04 0.84 7.63 -51.93 -0.40 0.45 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.76 5.94 -51.93 -0.31 0.45 16 44 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -31.92 348.55 -9.52 -41.44 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.85 Total: 9.54 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -0.23 Total: 5.04 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -2.28 Total: -50.24 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.39 Total: -27.07 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.92 -9.52 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.771 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds