Wall clock time and date at job start Tue Mar 31 2020 03:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99773 * 2 1 4 4 C 1.53234 * 109.34110 * 187.25528 * 3 2 1 5 5 N 1.47083 * 108.52139 * 306.17194 * 4 3 2 6 6 C 1.34774 * 120.88058 * 231.18802 * 5 4 3 7 7 O 1.21276 * 120.00109 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99942 * 179.97438 * 6 5 4 9 9 N 1.46902 * 109.47094 * 186.02190 * 8 6 5 10 10 C 1.47437 * 111.00035 * 176.65462 * 9 8 6 11 11 C 1.54321 * 107.23607 * 236.74296 * 10 9 8 12 12 C 1.55138 * 103.17151 * 337.63146 * 11 10 9 13 13 O 1.42908 * 110.98852 * 277.64608 * 12 11 10 14 14 C 1.50703 * 110.98952 * 153.83446 * 12 11 10 15 15 H 1.08004 * 119.99474 * 241.44640 * 14 12 11 16 16 C 1.37870 * 120.00196 * 61.44963 * 14 12 11 17 17 N 1.31515 * 119.99951 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00035 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47352 * 89.99922 * 18 16 14 20 20 H 1.48504 * 109.46943 * 209.99836 * 18 16 14 21 21 H 1.48497 * 109.47225 * 329.99833 * 18 16 14 22 22 C 1.47841 * 110.99874 * 55.81039 * 9 8 6 23 23 C 1.47086 * 118.23832 * 51.45456 * 5 4 3 24 24 C 1.46890 * 111.00309 * 124.30064 * 2 1 3 25 25 H 1.09000 * 109.47381 * 59.99934 * 1 2 3 26 26 H 1.09004 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47232 * 299.99475 * 1 2 3 28 28 H 1.09007 * 109.49095 * 67.29489 * 3 2 1 29 29 H 1.08998 * 109.51479 * 307.22985 * 3 2 1 30 30 H 1.09001 * 109.62994 * 186.46101 * 4 3 2 31 31 H 1.09001 * 109.62976 * 65.87819 * 4 3 2 32 32 H 1.09004 * 109.46870 * 66.02200 * 8 6 5 33 33 H 1.08997 * 109.47071 * 306.02485 * 8 6 5 34 34 H 1.09002 * 109.89254 * 117.33612 * 10 9 8 35 35 H 1.09006 * 109.88972 * 356.15086 * 10 9 8 36 36 H 1.09002 * 110.70316 * 96.09861 * 11 10 9 37 37 H 1.08994 * 110.70668 * 219.15692 * 11 10 9 38 38 H 0.96701 * 113.99570 * 298.54637 * 13 12 11 39 39 H 0.97011 * 119.99680 * 180.02562 * 17 16 14 40 40 H 1.09004 * 110.37401 * 265.19316 * 22 9 8 41 41 H 1.08998 * 110.37467 * 27.53517 * 22 9 8 42 42 H 1.08995 * 109.62458 * 68.25286 * 23 5 4 43 43 H 1.08991 * 109.62744 * 188.83579 * 23 5 4 44 44 H 1.09000 * 109.49909 * 292.71324 * 24 2 1 45 45 H 1.09004 * 109.49295 * 52.76314 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5163 1.3313 -0.1826 5 7 4.0869 0.4461 0.8441 6 6 5.1055 0.8585 1.6245 7 8 5.5640 1.9725 1.4847 8 6 5.6747 -0.0648 2.6708 9 7 6.6661 0.6603 3.4766 10 6 7.1875 -0.1893 4.5629 11 6 6.9263 0.5537 5.8900 12 6 6.7878 2.0335 5.4452 13 8 8.0707 2.6438 5.2906 14 6 5.9358 2.8111 6.4151 15 1 5.0144 3.2648 6.0809 16 6 6.3326 2.9434 7.7288 17 7 7.4544 2.3906 8.1357 18 14 5.2762 3.9067 8.9311 19 1 4.3017 2.9914 9.5774 20 1 6.1425 4.5207 9.9694 21 1 4.5447 4.9740 8.2024 22 6 6.0761 1.8776 4.0729 23 6 3.5205 -0.9031 0.9926 24 6 1.9955 -0.7728 1.1328 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.7554 1.8532 0.9480 29 1 1.5456 1.9341 -0.8180 30 1 3.9254 2.3353 -0.0690 31 1 3.7561 0.9451 -1.1733 32 1 6.1534 -0.9145 2.1838 33 1 4.8720 -0.4210 3.3164 34 1 8.2580 -0.3459 4.4300 35 1 6.6680 -1.1477 4.5660 36 1 6.0043 0.2025 6.3532 37 1 7.7685 0.4332 6.5713 38 1 8.5935 2.6715 6.1036 39 1 7.7334 2.4834 9.0602 40 1 6.2751 2.7440 3.4420 41 1 5.0030 1.7489 4.2147 42 1 3.7606 -1.4998 0.1127 43 1 3.9323 -1.3770 1.8835 44 1 1.7555 -0.2614 2.0650 45 1 1.5454 -1.7655 1.1364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:49 Heat of formation + Delta-G solvation = -80.880690 kcal Electronic energy + Delta-G solvation = -25455.064919 eV Core-core repulsion = 21892.926929 eV Total energy + Delta-G solvation = -3562.137989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.43590 -39.95049 -38.81067 -36.40876 -35.63169 -34.21141 -32.64463 -31.66033 -29.88174 -29.73382 -27.81419 -26.26056 -25.17378 -24.54715 -22.37716 -21.72276 -21.44234 -19.94121 -19.01216 -18.31327 -17.14922 -16.94946 -16.77611 -16.67943 -16.20962 -15.95586 -15.80847 -15.72940 -15.59042 -15.03249 -14.58554 -14.22176 -14.18900 -13.76092 -13.63721 -13.36175 -13.24895 -13.09080 -12.97896 -12.78639 -12.64010 -12.61778 -12.32153 -12.31607 -12.25620 -12.16458 -12.09520 -11.73975 -11.12843 -10.72977 -10.58314 -10.08817 -9.84675 -9.34665 -9.16003 -8.23887 -6.40258 1.36215 1.39163 1.49083 1.59713 1.86870 2.35651 2.89778 2.99702 3.13776 3.48285 3.86611 3.92803 3.94903 4.01317 4.08432 4.17205 4.22939 4.29913 4.35034 4.43478 4.44042 4.49929 4.61740 4.64170 4.71278 4.74664 4.78192 4.82637 4.91729 5.01445 5.03817 5.10429 5.28256 5.46704 5.47231 5.54935 5.78644 5.90916 5.92358 5.96458 6.10901 6.23264 6.41308 6.64075 7.19538 7.31358 7.46417 8.81430 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.003934 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.200585 B = 7115.410177 C = 7782.449517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.047 3.953 4 C 0.116 3.884 5 N -0.617 5.617 6 C 0.508 3.492 7 O -0.567 6.567 8 C 0.035 3.965 9 N -0.527 5.527 10 C 0.052 3.948 11 C -0.134 4.134 12 C 0.230 3.770 13 O -0.589 6.589 14 C -0.566 4.566 15 H 0.044 0.956 16 C 0.035 3.965 17 N -0.907 5.907 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.278 1.278 22 C 0.088 3.912 23 C 0.107 3.893 24 C 0.038 3.962 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.371 0.629 39 H 0.270 0.730 40 H 0.049 0.951 41 H 0.032 0.968 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.024 0.976 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 -12.076 -13.974 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.082 4.082 4 C -0.007 4.007 5 N -0.352 5.352 6 C 0.297 3.703 7 O -0.445 6.445 8 C -0.096 4.096 9 N -0.252 5.252 10 C -0.075 4.075 11 C -0.174 4.174 12 C 0.190 3.810 13 O -0.397 6.397 14 C -0.604 4.604 15 H 0.063 0.937 16 C -0.167 4.167 17 N -0.546 5.546 18 Si 0.784 3.216 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.203 1.203 22 C -0.040 4.040 23 C -0.015 4.015 24 C -0.091 4.091 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.219 0.781 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.042 0.958 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.099 -11.558 -15.291 22.666 hybrid contribution -1.129 1.068 2.687 3.104 sum -13.228 -10.490 -12.604 21.068 Atomic orbital electron populations 1.22435 0.85656 1.03254 1.00954 1.62009 1.09097 1.12892 1.43107 1.22439 0.94464 0.90222 1.01032 1.21672 0.92474 0.95019 0.91515 1.48301 1.34113 1.16768 1.36050 1.20991 0.79420 0.87678 0.82192 1.90706 1.60774 1.22910 1.70126 1.22381 0.95613 0.96624 0.94965 1.63353 1.33635 1.05680 1.22568 1.22825 1.00545 0.95192 0.88902 1.23038 1.00624 0.97435 0.96265 1.19954 0.81298 0.89395 0.90358 1.86174 1.31353 1.83552 1.38600 1.21743 1.07793 1.35455 0.95401 0.93726 1.25651 0.96278 0.95417 0.99306 1.69820 1.22545 1.44268 1.17940 0.85554 0.78797 0.78853 0.78373 1.19477 1.20156 1.20341 1.22674 0.94486 0.92706 0.94089 1.22228 0.92624 0.82117 1.04487 1.22664 0.95095 1.00067 0.91234 0.90286 0.89655 0.96265 0.96303 0.87738 0.91061 0.89425 0.84846 0.90600 0.91057 0.90304 0.93293 0.91978 0.78057 0.92043 0.93278 0.95022 0.88510 0.87763 0.95800 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.58 127.69 1.22 1.52 16 2 N -0.55 -8.74 4.88 -920.53 -4.49 -13.23 16 3 C 0.05 0.90 5.62 86.38 0.49 1.38 16 4 C 0.12 2.65 6.60 86.35 0.57 3.22 16 5 N -0.62 -15.17 3.00 -817.05 -2.45 -17.63 16 6 C 0.51 16.90 7.27 87.66 0.64 17.54 16 7 O -0.57 -24.90 13.76 -3.02 -0.04 -24.95 16 8 C 0.03 1.04 3.54 85.56 0.30 1.34 16 9 N -0.53 -21.48 5.07 -889.09 -4.50 -25.98 16 10 C 0.05 1.97 6.90 86.65 0.60 2.57 16 11 C -0.13 -6.28 5.36 31.77 0.17 -6.11 16 12 C 0.23 12.30 0.88 -9.99 -0.01 12.29 16 13 O -0.59 -33.71 13.16 -148.98 -1.96 -35.67 16 14 C -0.57 -32.35 8.28 25.60 0.21 -32.14 16 15 H 0.04 2.60 7.79 -2.91 -0.02 2.57 16 16 C 0.03 1.89 5.29 84.65 0.45 2.34 16 17 N -0.91 -49.46 10.74 21.44 0.23 -49.23 16 18 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C 0.09 4.34 4.48 86.94 0.39 4.73 16 23 C 0.11 1.69 6.54 86.50 0.57 2.26 16 24 C 0.04 0.57 5.64 86.54 0.49 1.05 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 27 H 0.02 0.26 8.14 -2.38 -0.02 0.24 16 28 H 0.02 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.10 1.57 8.11 -2.39 -0.02 1.55 16 30 H 0.07 2.00 7.06 -2.39 -0.02 1.99 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.13 3.00 8.14 -2.38 -0.02 2.98 16 33 H 0.08 1.98 7.35 -2.39 -0.02 1.97 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.08 2.31 7.58 -2.38 -0.02 2.30 16 36 H 0.05 2.29 8.03 -2.39 -0.02 2.27 16 37 H 0.06 3.07 7.53 -2.39 -0.02 3.05 16 38 H 0.37 21.01 7.56 -74.06 -0.56 20.45 16 39 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 40 H 0.05 2.75 6.94 -2.38 -0.02 2.73 16 41 H 0.03 1.54 7.63 -2.39 -0.02 1.52 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.35 5.94 -2.39 -0.01 1.33 16 44 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.11 1.11 8.06 -2.38 -0.02 1.09 16 Total: -1.00 -71.79 348.55 -4.70 -76.50 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.42 Total: 32.83 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 6.08 Total: 12.00 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -11.22 Total: -106.07 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -2.00 Total: -60.62 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.79 -4.70 -76.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.385 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds