Wall clock time and date at job start Tue Mar 31 2020 03:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21287 * 120.00095 * 2 1 4 4 N 1.34774 * 120.00198 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00262 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47058 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46860 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46934 * 179.97438 * 7 6 5 9 9 C 1.34774 * 119.99554 * 179.97438 * 8 7 6 10 10 O 1.21579 * 120.00663 * 355.01845 * 9 8 7 11 11 N 1.34777 * 119.99807 * 175.01679 * 9 8 7 12 12 C 1.46928 * 120.62990 * 5.22879 * 11 9 8 13 13 C 1.53199 * 108.77480 * 126.36688 * 12 11 9 14 14 C 1.53038 * 109.30912 * 54.63978 * 13 12 11 15 15 C 1.53041 * 109.53781 * 298.62992 * 14 13 12 16 16 H 1.09005 * 109.50089 * 301.41898 * 15 14 13 17 17 C 1.50704 * 109.50070 * 181.35339 * 15 14 13 18 18 H 1.08002 * 119.99176 * 0.02562 * 17 15 14 19 19 C 1.37876 * 120.00247 * 180.02562 * 17 15 14 20 20 N 1.31515 * 119.99952 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99941 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47179 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46877 * 119.99814 * 21 19 17 24 24 H 1.48498 * 109.47032 * 239.99664 * 21 19 17 25 25 C 1.46929 * 120.63330 * 184.94825 * 11 9 8 26 26 H 1.08994 * 109.46551 * 240.00002 * 1 2 3 27 27 H 1.08996 * 109.46843 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46981 * 120.00092 * 1 2 3 29 29 H 0.97000 * 120.00085 * 359.97438 * 4 2 1 30 30 H 1.08999 * 109.47085 * 59.99637 * 5 4 2 31 31 H 1.09003 * 109.46470 * 299.99937 * 5 4 2 32 32 H 1.08999 * 109.47718 * 59.99719 * 6 5 4 33 33 H 1.09003 * 109.46726 * 299.99481 * 6 5 4 34 34 H 1.08999 * 109.47220 * 59.99370 * 7 6 5 35 35 H 1.09003 * 109.46991 * 299.99275 * 7 6 5 36 36 H 0.96993 * 120.00219 * 359.97438 * 8 7 6 37 37 H 1.08999 * 109.59113 * 246.15587 * 12 11 9 38 38 H 1.08998 * 109.58822 * 6.58007 * 12 11 9 39 39 H 1.08998 * 109.49155 * 174.58631 * 13 12 11 40 40 H 1.08997 * 109.49765 * 294.68518 * 13 12 11 41 41 H 1.08999 * 109.46342 * 58.65529 * 14 13 12 42 42 H 1.09003 * 109.45501 * 178.61315 * 14 13 12 43 43 H 0.96993 * 119.99900 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58219 * 353.42016 * 25 11 9 45 45 H 1.09000 * 109.58348 * 113.84624 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1672 0.0000 6 6 4.1559 -2.6097 -0.0014 7 6 5.6860 -2.6096 -0.0001 8 7 6.1743 -3.9908 -0.0009 9 6 7.4994 -4.2370 -0.0005 10 8 8.2888 -3.3168 -0.0910 11 7 7.9495 -5.5034 0.1002 12 6 7.0111 -6.6340 0.0953 13 6 7.4375 -7.6240 -0.9933 14 6 8.8988 -8.0211 -0.7720 15 6 9.7876 -6.7794 -0.8734 16 1 9.6598 -6.3195 -1.8534 17 6 11.2296 -7.1763 -0.6883 18 1 11.4868 -8.2110 -0.5160 19 6 12.2202 -6.2187 -0.7390 20 7 11.9069 -4.9589 -0.9494 21 14 14.0075 -6.7108 -0.5088 22 1 14.0929 -8.1770 -0.2895 23 1 14.7814 -6.3465 -1.7228 24 1 14.5689 -6.0000 0.6679 25 6 9.3882 -5.7801 0.2108 26 1 -0.3632 -0.5138 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6960 -2.0072 -0.0005 30 1 4.0090 -0.6539 0.8905 31 1 4.0096 -0.6527 -0.8895 32 1 3.7930 -3.1226 -0.8920 33 1 3.7923 -3.1244 0.8880 34 1 6.0486 -2.0968 0.8907 35 1 6.0500 -2.0947 -0.8893 36 1 5.5440 -4.7281 -0.0016 37 1 7.0295 -7.1285 1.0665 38 1 6.0043 -6.2724 -0.1138 39 1 6.8076 -8.5122 -0.9441 40 1 7.3318 -7.1562 -1.9721 41 1 9.0084 -8.4663 0.2169 42 1 9.1974 -8.7444 -1.5308 43 1 12.6038 -4.2853 -0.9854 44 1 9.9494 -4.8551 0.0780 45 1 9.6045 -6.2035 1.1917 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595438406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:57 Heat of formation + Delta-G solvation = -78.481561 kcal Electronic energy + Delta-G solvation = -23944.350663 eV Core-core repulsion = 20382.316708 eV Total energy + Delta-G solvation = -3562.033955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92737 -39.66261 -37.11014 -36.09586 -34.41001 -33.34400 -31.96486 -31.40601 -29.90079 -29.46139 -25.73925 -25.02727 -23.83769 -22.08753 -21.76878 -20.85203 -20.08203 -18.77996 -17.54659 -17.03322 -16.61309 -16.31330 -16.15087 -15.49548 -15.35534 -14.66045 -14.42682 -14.04044 -13.72447 -13.64140 -13.50347 -13.23208 -13.03495 -12.77632 -12.60147 -12.44534 -12.21273 -12.06343 -11.91941 -11.80718 -11.29577 -10.98548 -10.89214 -10.48128 -10.39423 -10.23448 -10.21848 -9.86628 -9.43905 -9.43622 -9.08251 -8.92429 -8.76764 -8.40098 -7.63442 -5.95955 -4.05422 2.31558 2.78864 3.26145 3.33282 3.40446 3.43233 3.85050 4.32534 4.42899 4.47057 4.65904 4.70835 4.76686 4.89436 4.94796 5.25149 5.28410 5.33659 5.40209 5.40784 5.48871 5.59530 5.63986 5.88884 5.91370 5.97506 6.05820 6.15386 6.31198 6.59048 6.67273 6.78942 6.80769 6.99853 7.04992 7.12760 7.37056 7.51343 7.76632 7.88109 7.95043 8.09065 8.43208 8.59006 8.98649 9.26258 9.60221 11.08947 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029421 B = 0.002528 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.482058 B =11071.759800 C =11872.038832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.507 3.493 3 O -0.545 6.545 4 N -0.732 5.732 5 C 0.120 3.880 6 C -0.141 4.141 7 C 0.143 3.857 8 N -0.759 5.759 9 C 0.699 3.301 10 O -0.580 6.580 11 N -0.623 5.623 12 C 0.116 3.884 13 C -0.134 4.134 14 C -0.110 4.110 15 C 0.038 3.962 16 H 0.028 0.972 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.128 3.872 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.401 0.599 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.390 0.610 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.263 0.737 44 H 0.124 0.876 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.571 1.023 2.633 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.294 3.706 3 O -0.422 6.422 4 N -0.385 5.385 5 C -0.004 4.004 6 C -0.179 4.179 7 C 0.018 3.982 8 N -0.419 5.419 9 C 0.400 3.600 10 O -0.457 6.457 11 N -0.360 5.360 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.019 3.981 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.007 3.993 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.235 0.765 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.225 0.775 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.142 0.858 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.414 2.673 2.574 22.719 hybrid contribution 0.362 -1.132 0.092 1.192 sum -22.052 1.542 2.666 22.266 Atomic orbital electron populations 1.21918 0.91604 1.05610 1.04234 1.20843 0.90671 0.83455 0.75621 1.90755 1.70910 1.31430 1.49143 1.46051 1.07547 1.08840 1.76044 1.21247 0.79346 0.96592 1.03240 1.21965 0.96204 0.96482 1.03298 1.20902 0.91227 0.83349 1.02767 1.45279 1.06140 1.07828 1.82611 1.15946 0.81826 0.83934 0.78251 1.90940 1.54513 1.43219 1.57027 1.47790 1.09510 1.02704 1.75955 1.21483 0.91608 0.88576 0.99137 1.21951 0.98889 0.97793 0.98572 1.21612 0.92736 1.00035 1.00357 1.18915 0.93561 0.90284 0.95321 0.95381 1.21103 0.90504 0.94022 1.50332 0.92341 1.25071 0.99098 0.95049 0.94912 1.69908 1.32940 1.00369 1.48319 0.86547 0.85204 0.78559 0.77754 1.19825 1.21043 1.20979 1.22101 0.74763 1.04319 0.98085 0.89398 0.88957 0.89376 0.76487 0.90913 0.90867 0.90608 0.90668 0.91631 0.91420 0.77450 0.92188 0.92245 0.92360 0.92209 0.93203 0.93073 0.92698 0.85850 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.32 36.01 0.37 -0.40 16 2 C 0.51 4.48 7.94 -10.98 -0.09 4.39 16 3 O -0.55 -7.65 17.09 5.55 0.09 -7.56 16 4 N -0.73 -4.92 5.56 -60.29 -0.33 -5.26 16 5 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 6 C -0.14 -1.03 5.44 -26.73 -0.15 -1.18 16 7 C 0.14 1.72 5.68 -4.04 -0.02 1.69 16 8 N -0.76 -10.76 5.46 -65.22 -0.36 -11.12 16 9 C 0.70 14.23 8.29 -86.92 -0.72 13.51 16 10 O -0.58 -14.75 15.77 5.30 0.08 -14.66 16 11 N -0.62 -12.49 2.98 -178.76 -0.53 -13.02 16 12 C 0.12 1.74 6.39 -3.71 -0.02 1.71 16 13 C -0.13 -2.09 6.08 -26.61 -0.16 -2.26 16 14 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 15 C 0.04 0.95 2.24 -91.87 -0.21 0.75 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.17 8.57 -34.44 -0.29 -14.47 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.97 11.39 55.43 0.63 -25.34 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.13 3.13 5.39 -3.93 -0.02 3.11 16 26 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.40 1.41 8.47 -40.82 -0.35 1.06 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.39 4.28 5.96 -40.82 -0.24 4.03 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.68 5.65 -51.93 -0.29 0.38 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.12 3.57 5.10 -51.93 -0.27 3.30 16 45 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -36.24 363.01 -8.98 -45.22 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.45 Total: 2.72 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -1.57 Total: 7.17 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.59 Total: -54.73 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.18 Total: -22.22 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.24 -8.98 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595438406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.262 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds