Wall clock time and date at job start Tue Mar 31 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46989 * 119.99434 * 2 1 3 5 5 C 1.34773 * 120.00482 * 274.99795 * 4 2 1 6 6 O 1.21593 * 119.99974 * 4.94942 * 5 4 2 7 7 N 1.34773 * 120.00559 * 184.94496 * 5 4 2 8 8 C 1.46930 * 120.63022 * 354.48045 * 7 5 4 9 9 C 1.53188 * 108.77465 * 233.58365 * 8 7 5 10 10 C 1.53035 * 109.31603 * 305.36362 * 9 8 7 11 11 C 1.53043 * 109.53732 * 61.36344 * 10 9 8 12 12 H 1.09004 * 109.49512 * 58.59175 * 11 10 9 13 13 C 1.50696 * 109.49659 * 178.68663 * 11 10 9 14 14 H 1.07999 * 120.00434 * 0.02562 * 13 11 10 15 15 C 1.37881 * 120.00028 * 180.02562 * 13 11 10 16 16 N 1.31509 * 119.99933 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00156 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47005 * 59.99389 * 17 15 13 19 19 H 1.48495 * 109.47334 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47117 * 299.99911 * 17 15 13 21 21 C 1.46926 * 120.63233 * 174.19856 * 7 5 4 22 22 C 1.50698 * 109.47379 * 239.99563 * 2 1 3 23 23 O 1.21281 * 120.00183 * 264.14289 * 22 2 1 24 24 N 1.34777 * 119.99718 * 84.14029 * 22 2 1 25 25 C 1.46497 * 119.99853 * 184.56611 * 24 22 2 26 26 C 1.46493 * 120.00327 * 4.56203 * 24 22 2 27 27 H 1.08997 * 109.47107 * 175.02533 * 1 2 3 28 28 H 1.09002 * 109.47220 * 295.02508 * 1 2 3 29 29 H 1.08999 * 109.47277 * 55.02208 * 1 2 3 30 30 H 0.97000 * 119.99849 * 95.00743 * 4 2 1 31 31 H 1.09005 * 109.58159 * 353.37274 * 8 7 5 32 32 H 1.08995 * 109.58659 * 113.65069 * 8 7 5 33 33 H 1.09005 * 109.49600 * 65.31682 * 9 8 7 34 34 H 1.08995 * 109.49766 * 185.40750 * 9 8 7 35 35 H 1.08998 * 109.46556 * 181.38942 * 10 9 8 36 36 H 1.09004 * 109.45804 * 301.35833 * 10 9 8 37 37 H 0.97003 * 120.00425 * 180.02562 * 16 15 13 38 38 H 1.09010 * 109.58662 * 246.20373 * 21 7 5 39 39 H 1.08992 * 109.58911 * 6.62731 * 21 7 5 40 40 H 1.09003 * 109.47485 * 89.99767 * 25 24 22 41 41 H 1.08997 * 109.47511 * 209.99888 * 25 24 22 42 42 H 1.09001 * 109.47247 * 330.00062 * 25 24 22 43 43 H 1.09003 * 109.46964 * 4.91015 * 26 24 22 44 44 H 1.08998 * 109.47512 * 124.91239 * 26 24 22 45 45 H 1.09006 * 109.47363 * 244.91320 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3572 6 8 1.7739 1.1365 2.4356 7 7 2.6893 -0.6254 3.4312 8 6 3.0338 -2.0532 3.3893 9 6 2.3647 -2.7567 4.5743 10 6 2.7638 -2.0517 5.8726 11 6 2.2798 -0.6003 5.8366 12 1 1.1976 -0.5808 5.7072 13 6 2.6449 0.0839 7.1286 14 1 3.1702 -0.4614 7.8988 15 6 2.3084 1.4061 7.3276 16 7 1.6693 2.0703 6.3897 17 14 2.7617 2.2545 8.9290 18 1 4.2363 2.2295 9.1023 19 1 2.2917 3.6627 8.8935 20 1 2.1179 1.5458 10.0641 21 6 2.9530 0.1290 4.6640 22 6 2.0324 -0.7105 -1.2304 23 8 2.3356 -1.8833 -1.1721 24 7 2.1447 -0.0425 -2.3956 25 6 2.5370 -0.7555 -3.6137 26 6 1.8744 1.3965 -2.4440 27 1 -0.3633 -1.0238 -0.0891 28 1 -0.3634 0.4347 0.9312 29 1 -0.3634 0.5891 -0.8420 30 1 2.2491 -1.6316 1.1527 31 1 2.6755 -2.4882 2.4563 32 1 4.1154 -2.1702 3.4555 33 1 1.2817 -2.7169 4.4567 34 1 2.6891 -3.7966 4.6104 35 1 2.3088 -2.5653 6.7195 36 1 3.8487 -2.0700 5.9771 37 1 1.4328 3.0007 6.5294 38 1 4.0282 0.1862 4.8346 39 1 2.5416 1.1341 4.5724 40 1 1.6460 -1.1249 -4.1215 41 1 3.0764 -0.0767 -4.2743 42 1 3.1804 -1.5955 -3.3519 43 1 1.6843 1.7646 -1.4358 44 1 2.7370 1.9143 -2.8633 45 1 1.0006 1.5812 -3.0690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595456531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:20 Heat of formation + Delta-G solvation = -77.453433 kcal Electronic energy + Delta-G solvation = -25284.212360 eV Core-core repulsion = 21722.222988 eV Total energy + Delta-G solvation = -3561.989372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76450 -40.73784 -38.51661 -36.71770 -36.08672 -35.25164 -33.56139 -31.88273 -31.17474 -28.94855 -27.39512 -27.02003 -26.23640 -24.41213 -23.45029 -21.70691 -20.80600 -20.29035 -19.18264 -18.28501 -18.05492 -17.45642 -16.86810 -16.73775 -16.43148 -16.27420 -15.45195 -15.21822 -15.14101 -14.91651 -14.48629 -14.46504 -14.19298 -14.02298 -13.60043 -13.50949 -13.45508 -13.35652 -13.24134 -12.96340 -12.83413 -12.70562 -12.57054 -12.26998 -12.22415 -11.86418 -11.62252 -11.23052 -11.00037 -10.93302 -10.82413 -10.48993 -10.27880 -9.78185 -9.29512 -8.06630 -6.24021 1.28792 1.43280 1.44772 1.53084 1.57930 2.04985 2.22591 2.44717 2.99090 3.21651 3.30297 3.88180 4.00356 4.03085 4.14830 4.25972 4.28303 4.41492 4.52036 4.55611 4.60185 4.69990 4.74078 4.74426 4.79886 4.85140 4.91560 4.92998 5.10078 5.13958 5.24741 5.26981 5.30454 5.36383 5.45706 5.58536 5.63729 5.88884 5.98266 6.13615 6.15007 6.38044 6.88061 6.90882 7.05860 7.45345 7.62165 8.96476 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024339 B = 0.003681 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.117319 B = 7604.968804 C = 8377.957633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 H 0.107 0.893 4 N -0.729 5.729 5 C 0.700 3.300 6 O -0.627 6.627 7 N -0.626 5.626 8 C 0.110 3.890 9 C -0.125 4.125 10 C -0.104 4.104 11 C 0.039 3.961 12 H -0.014 1.014 13 C -0.538 4.538 14 H 0.062 0.938 15 C 0.011 3.989 16 N -0.912 5.912 17 Si 0.958 3.042 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.270 1.270 21 C 0.144 3.856 22 C 0.515 3.485 23 O -0.568 6.568 24 N -0.612 5.612 25 C 0.081 3.919 26 C 0.060 3.940 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.407 0.593 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.260 0.740 38 H 0.036 0.964 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -5.815 -20.036 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.125 0.875 4 N -0.390 5.390 5 C 0.401 3.599 6 O -0.508 6.508 7 N -0.362 5.362 8 C -0.013 4.013 9 C -0.163 4.163 10 C -0.142 4.142 11 C 0.020 3.980 12 H 0.004 0.996 13 C -0.577 4.577 14 H 0.080 0.920 15 C -0.189 4.189 16 N -0.551 5.551 17 Si 0.783 3.217 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.195 1.195 21 C 0.021 3.979 22 C 0.302 3.698 23 O -0.448 6.448 24 N -0.345 5.345 25 C -0.061 4.061 26 C -0.081 4.081 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.246 0.754 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.102 -5.414 -20.035 20.783 hybrid contribution 0.073 0.424 1.023 1.109 sum 1.175 -4.990 -19.013 19.692 Atomic orbital electron populations 1.22036 0.91845 1.03200 1.03666 1.20758 0.96538 0.97335 0.82263 0.87524 1.44989 1.72173 1.14317 1.07509 1.16013 0.78641 0.84328 0.80901 1.90882 1.57055 1.18587 1.84254 1.47680 1.64390 1.11192 1.12919 1.21823 1.00666 0.79373 0.99429 1.21893 0.99992 1.00088 0.94309 1.21504 1.00312 0.95593 0.96754 1.18978 0.93710 0.92520 0.92821 0.99585 1.21479 1.37845 0.96593 1.01737 0.92018 1.25893 0.94771 0.98444 0.99801 1.70095 1.40199 1.10148 1.34622 0.85619 0.78895 0.77197 0.79985 1.19234 1.21391 1.19479 1.21710 0.97248 0.97559 0.81347 1.20584 0.77251 0.86784 0.85168 1.90652 1.51155 1.17578 1.85401 1.47795 1.67392 1.10911 1.08395 1.21824 1.01156 0.98023 0.85098 1.22275 1.03653 0.77822 1.04389 0.91803 0.92796 0.88353 0.75375 0.89263 0.90210 0.93275 0.87916 0.92905 0.92329 0.93130 0.94554 0.90248 0.91430 0.88159 0.92102 0.90452 0.89571 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.46 71.98 0.68 -2.98 16 2 C 0.14 3.84 2.13 44.24 0.09 3.94 16 3 H 0.11 2.99 5.58 -2.38 -0.01 2.98 16 4 N -0.73 -24.17 4.96 -461.41 -2.29 -26.46 16 5 C 0.70 29.99 8.25 179.06 1.48 31.47 16 6 O -0.63 -32.29 15.42 -4.01 -0.06 -32.35 16 7 N -0.63 -26.51 2.97 -836.07 -2.48 -28.99 16 8 C 0.11 3.47 6.38 86.36 0.55 4.02 16 9 C -0.12 -3.96 6.08 30.67 0.19 -3.77 16 10 C -0.10 -4.15 5.10 30.62 0.16 -3.99 16 11 C 0.04 2.02 2.26 -11.32 -0.03 2.00 16 12 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 13 C -0.54 -30.03 8.56 25.60 0.22 -29.81 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.01 0.60 5.30 84.66 0.45 1.05 16 16 N -0.91 -55.85 11.41 21.45 0.24 -55.61 16 17 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C 0.14 7.37 5.44 86.51 0.47 7.84 16 22 C 0.52 12.82 6.89 87.66 0.60 13.43 16 23 O -0.57 -17.33 15.54 -3.03 -0.05 -17.38 16 24 N -0.61 -10.65 3.27 -871.91 -2.85 -13.51 16 25 C 0.08 1.05 10.52 127.77 1.34 2.39 16 26 C 0.06 0.68 10.42 127.77 1.33 2.01 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 29 H 0.10 1.73 8.00 -2.39 -0.02 1.71 16 30 H 0.41 12.36 5.27 -92.71 -0.49 11.87 16 31 H 0.09 2.37 5.65 -2.38 -0.01 2.35 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.22 8.14 -2.38 -0.02 2.21 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.08 4.82 5.14 -2.39 -0.01 4.80 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.72 8.07 -2.39 -0.02 0.70 16 42 H 0.06 1.03 7.36 -2.39 -0.02 1.02 16 43 H 0.08 1.08 5.27 -2.39 -0.01 1.06 16 44 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -76.97 355.27 2.58 -74.40 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.50 Total: 25.77 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 7.54 Total: 27.58 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -7.38 Total: -124.57 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.11 Total: -49.73 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -76.97 2.58 -74.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595456531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.056 kcal (2) G-P(sol) polarization free energy of solvation -76.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds