Wall clock time and date at job start Tue Mar 31 2020 03:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47168 * 2 1 4 4 C 1.46501 * 120.00145 * 269.99906 * 3 2 1 5 5 C 1.34778 * 120.00223 * 89.99972 * 3 2 1 6 6 O 1.21286 * 119.99689 * 0.02562 * 5 3 2 7 7 C 1.50697 * 120.00270 * 179.97438 * 5 3 2 8 8 N 1.46501 * 109.47210 * 179.97438 * 7 5 3 9 9 C 1.34771 * 119.99884 * 180.02562 * 8 7 5 10 10 O 1.21585 * 120.00343 * 4.97979 * 9 8 7 11 11 N 1.34775 * 119.99778 * 184.98258 * 9 8 7 12 12 C 1.46933 * 120.63355 * 354.71095 * 11 9 8 13 13 C 1.53191 * 108.89458 * 233.56203 * 12 11 9 14 14 C 1.53081 * 109.29427 * 305.57916 * 13 12 11 15 15 C 1.53030 * 109.65924 * 61.15107 * 14 13 12 16 16 H 1.09005 * 109.50185 * 58.65547 * 15 14 13 17 17 C 1.50704 * 109.49815 * 178.74830 * 15 14 13 18 18 H 1.07999 * 119.99519 * 5.20813 * 17 15 14 19 19 C 1.37874 * 120.00373 * 185.20799 * 17 15 14 20 20 N 1.31522 * 119.99919 * 355.11034 * 19 17 15 21 21 Si 1.86803 * 120.00177 * 175.11493 * 19 17 15 22 22 H 1.48498 * 109.47006 * 95.00028 * 21 19 17 23 23 H 1.48498 * 109.46864 * 214.99736 * 21 19 17 24 24 H 1.48501 * 109.46723 * 334.99881 * 21 19 17 25 25 C 1.46933 * 120.63139 * 174.73371 * 11 9 8 26 26 H 1.09007 * 109.47018 * 300.00395 * 1 2 3 27 27 H 1.09000 * 109.47551 * 59.99348 * 1 2 3 28 28 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47069 * 240.00229 * 2 1 3 30 30 H 1.08995 * 109.47550 * 119.99933 * 2 1 3 31 31 H 1.08996 * 109.47357 * 270.00065 * 4 3 2 32 32 H 1.09009 * 109.46932 * 30.00340 * 4 3 2 33 33 H 1.09006 * 109.47266 * 149.99592 * 4 3 2 34 34 H 1.08999 * 109.46836 * 60.00376 * 7 5 3 35 35 H 1.09001 * 109.47156 * 300.00417 * 7 5 3 36 36 H 0.96999 * 119.99658 * 0.02562 * 8 7 5 37 37 H 1.09003 * 109.58255 * 353.41597 * 12 11 9 38 38 H 1.08994 * 109.58353 * 113.70070 * 12 11 9 39 39 H 1.09002 * 109.49714 * 65.38272 * 13 12 11 40 40 H 1.08992 * 109.49891 * 185.48381 * 13 12 11 41 41 H 1.08999 * 109.34228 * 301.12590 * 14 13 12 42 42 H 1.09002 * 109.44048 * 181.23816 * 14 13 12 43 43 H 0.96999 * 119.99788 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58860 * 246.15139 * 25 11 9 45 45 H 1.09000 * 109.58464 * 6.58211 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2430 2.0166 1.1672 6 8 2.0412 1.4447 2.2175 7 6 2.7458 3.4372 1.1672 8 7 2.9079 3.8979 2.5484 9 6 3.3494 5.1472 2.7946 10 8 3.5268 5.9218 1.8744 11 7 3.5944 5.5379 4.0610 12 6 3.2763 4.6552 5.1917 13 6 2.3937 5.4187 6.1842 14 6 3.0887 6.7244 6.5784 15 6 3.2901 7.5958 5.3366 16 1 2.3237 7.8025 4.8766 17 6 3.9466 8.8930 5.7334 18 1 4.2719 9.0440 6.7521 19 6 4.1320 9.8869 4.7961 20 7 3.8245 9.6682 3.5361 21 14 4.8200 11.5441 5.3154 22 1 6.2895 11.5588 5.1021 23 1 4.1913 12.6173 4.5041 24 1 4.5260 11.7735 6.7529 25 6 4.1842 6.8550 4.3373 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.2919 1.9006 -1.5834 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1412 -1.1384 34 1 2.0282 4.0767 0.6532 35 1 3.7061 3.4827 0.6535 36 1 2.6975 3.3037 3.2856 37 1 2.7431 3.7760 4.8300 38 1 4.1980 4.3465 5.6848 39 1 1.4347 5.6456 5.7184 40 1 2.2320 4.8076 7.0720 41 1 4.0574 6.4976 7.0239 42 1 2.4729 7.2593 7.3015 43 1 3.9552 10.3673 2.8766 44 1 5.1798 6.7277 4.7624 45 1 4.2501 7.4272 3.4119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595586872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:14 Heat of formation + Delta-G solvation = -60.752631 kcal Electronic energy + Delta-G solvation = -24797.999754 eV Core-core repulsion = 21236.734583 eV Total energy + Delta-G solvation = -3561.265171 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40451 -39.39090 -36.82688 -36.15936 -34.16553 -33.20482 -31.85718 -31.48983 -29.73196 -27.75908 -26.90826 -24.99527 -24.28430 -23.06612 -21.75521 -20.05954 -19.66985 -18.83915 -17.69198 -16.94121 -16.48021 -16.25942 -15.97740 -15.45190 -14.79627 -14.55118 -14.20222 -14.01569 -13.68627 -13.62677 -13.37645 -13.18676 -12.98039 -12.86516 -12.55494 -12.48038 -12.39991 -12.24840 -11.97381 -11.81253 -11.36333 -10.98085 -10.83272 -10.47893 -10.34552 -10.19456 -10.07837 -9.79759 -9.44563 -9.05710 -9.02254 -8.87087 -8.79964 -8.41110 -7.59351 -5.94319 -4.02562 2.34035 2.54020 3.30875 3.35809 3.41541 3.44668 3.84715 4.23114 4.43377 4.51465 4.73446 4.76239 4.85495 5.07735 5.12751 5.32008 5.34784 5.35683 5.38849 5.39837 5.45023 5.58679 5.59664 5.72303 5.86597 6.06483 6.16036 6.24271 6.38870 6.62996 6.68913 6.73221 6.87115 7.02235 7.04744 7.09792 7.39308 7.56613 7.78682 7.84239 7.97586 8.09830 8.46008 8.61516 9.01764 9.26061 9.62643 11.11200 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.003231 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.297443 B = 8663.603391 C = 9436.027509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.617 5.617 4 C 0.072 3.928 5 C 0.511 3.489 6 O -0.536 6.536 7 C 0.124 3.876 8 N -0.749 5.749 9 C 0.703 3.297 10 O -0.585 6.585 11 N -0.620 5.620 12 C 0.114 3.886 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.039 3.961 16 H 0.031 0.969 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.131 3.869 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.262 0.738 44 H 0.040 0.960 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 -19.053 -7.793 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.352 5.352 4 C -0.071 4.071 5 C 0.299 3.701 6 O -0.413 6.413 7 C -0.004 4.004 8 N -0.412 5.412 9 C 0.404 3.596 10 O -0.462 6.462 11 N -0.356 5.356 12 C -0.010 4.010 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.049 0.951 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.010 3.990 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.179 -18.682 -8.097 20.786 hybrid contribution 0.197 0.570 0.418 0.734 sum -3.982 -18.113 -7.679 20.072 Atomic orbital electron populations 1.22135 0.95752 1.02274 1.02520 1.21442 0.94530 0.81923 1.03237 1.47836 1.66468 1.14543 1.06316 1.21923 1.01741 0.98346 0.85087 1.20761 0.77127 0.88673 0.83489 1.90676 1.52007 1.67647 1.30942 1.20801 1.02669 0.91042 0.85927 1.45042 1.73953 1.15049 1.07143 1.15845 0.78454 0.81144 0.84110 1.90922 1.59523 1.52576 1.43185 1.47764 1.65319 1.19909 1.02626 1.21518 0.98770 0.92262 0.88484 1.21950 0.99156 0.98216 0.97843 1.21626 0.98803 0.94272 1.00030 1.18997 0.96317 0.92441 0.90257 0.95080 1.21073 1.40322 0.98716 0.95831 0.92411 1.25064 0.95361 0.98650 0.94959 1.69942 1.47312 1.33366 1.00849 0.86602 0.79000 0.83993 0.78536 1.20771 1.21213 1.19921 1.22209 0.94506 0.78367 1.03917 0.92078 0.92529 0.91538 0.90448 0.89752 0.91990 0.90728 0.90219 0.88721 0.88887 0.75852 0.91859 0.92102 0.92206 0.92243 0.93268 0.93034 0.92757 0.94158 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.16 0.38 -0.84 16 2 C 0.11 0.85 6.13 -4.04 -0.02 0.83 16 3 N -0.62 -5.60 2.87 -181.57 -0.52 -6.12 16 4 C 0.07 0.44 10.24 59.85 0.61 1.05 16 5 C 0.51 6.33 7.74 -10.99 -0.09 6.24 16 6 O -0.54 -8.15 15.25 5.55 0.08 -8.07 16 7 C 0.12 1.67 4.71 -5.19 -0.02 1.64 16 8 N -0.75 -12.48 5.44 -66.42 -0.36 -12.84 16 9 C 0.70 14.91 8.29 -86.92 -0.72 14.18 16 10 O -0.58 -14.65 15.77 5.29 0.08 -14.57 16 11 N -0.62 -13.06 2.97 -178.49 -0.53 -13.59 16 12 C 0.11 1.92 6.38 -3.71 -0.02 1.89 16 13 C -0.13 -2.28 6.09 -26.59 -0.16 -2.44 16 14 C -0.11 -2.25 5.10 -26.67 -0.14 -2.38 16 15 C 0.04 0.99 2.20 -91.65 -0.20 0.79 16 16 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.52 -14.30 8.49 -34.44 -0.29 -14.59 16 18 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 19 C 0.06 1.76 5.36 -17.82 -0.10 1.66 16 20 N -0.88 -25.92 11.61 55.43 0.64 -25.28 16 21 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.13 3.24 5.48 -3.70 -0.02 3.22 16 26 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.08 0.77 7.42 -51.93 -0.39 0.38 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.32 8.07 -51.92 -0.42 -0.10 16 33 H 0.08 0.50 6.44 -51.93 -0.33 0.16 16 34 H 0.10 1.24 7.40 -51.93 -0.38 0.85 16 35 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 36 H 0.40 6.33 4.93 -40.82 -0.20 6.13 16 37 H 0.06 0.93 5.65 -51.93 -0.29 0.64 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.12 3.43 5.34 -51.93 -0.28 3.15 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -34.00 358.28 -8.35 -42.35 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.33 Total: 5.04 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -0.79 Total: 11.26 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.77 Total: -57.84 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.17 Total: -22.64 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.00 -8.35 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595586872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.405 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds