Wall clock time and date at job start Tue Mar 31 2020 03:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47168 * 2 1 4 4 C 1.46501 * 120.00145 * 269.99906 * 3 2 1 5 5 C 1.34778 * 120.00223 * 89.99972 * 3 2 1 6 6 O 1.21286 * 119.99689 * 0.02562 * 5 3 2 7 7 C 1.50697 * 120.00270 * 179.97438 * 5 3 2 8 8 N 1.46501 * 109.47210 * 179.97438 * 7 5 3 9 9 C 1.34771 * 119.99884 * 180.02562 * 8 7 5 10 10 O 1.21585 * 120.00343 * 4.97979 * 9 8 7 11 11 N 1.34775 * 119.99778 * 184.98258 * 9 8 7 12 12 C 1.46933 * 120.63355 * 354.71095 * 11 9 8 13 13 C 1.53191 * 108.89458 * 233.56203 * 12 11 9 14 14 C 1.53081 * 109.29427 * 305.57916 * 13 12 11 15 15 C 1.53030 * 109.65924 * 61.15107 * 14 13 12 16 16 H 1.09005 * 109.50185 * 58.65547 * 15 14 13 17 17 C 1.50704 * 109.49815 * 178.74830 * 15 14 13 18 18 H 1.07999 * 119.99519 * 5.20813 * 17 15 14 19 19 C 1.37874 * 120.00373 * 185.20799 * 17 15 14 20 20 N 1.31522 * 119.99919 * 355.11034 * 19 17 15 21 21 Si 1.86803 * 120.00177 * 175.11493 * 19 17 15 22 22 H 1.48498 * 109.47006 * 95.00028 * 21 19 17 23 23 H 1.48498 * 109.46864 * 214.99736 * 21 19 17 24 24 H 1.48501 * 109.46723 * 334.99881 * 21 19 17 25 25 C 1.46933 * 120.63139 * 174.73371 * 11 9 8 26 26 H 1.09007 * 109.47018 * 300.00395 * 1 2 3 27 27 H 1.09000 * 109.47551 * 59.99348 * 1 2 3 28 28 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47069 * 240.00229 * 2 1 3 30 30 H 1.08995 * 109.47550 * 119.99933 * 2 1 3 31 31 H 1.08996 * 109.47357 * 270.00065 * 4 3 2 32 32 H 1.09009 * 109.46932 * 30.00340 * 4 3 2 33 33 H 1.09006 * 109.47266 * 149.99592 * 4 3 2 34 34 H 1.08999 * 109.46836 * 60.00376 * 7 5 3 35 35 H 1.09001 * 109.47156 * 300.00417 * 7 5 3 36 36 H 0.96999 * 119.99658 * 0.02562 * 8 7 5 37 37 H 1.09003 * 109.58255 * 353.41597 * 12 11 9 38 38 H 1.08994 * 109.58353 * 113.70070 * 12 11 9 39 39 H 1.09002 * 109.49714 * 65.38272 * 13 12 11 40 40 H 1.08992 * 109.49891 * 185.48381 * 13 12 11 41 41 H 1.08999 * 109.34228 * 301.12590 * 14 13 12 42 42 H 1.09002 * 109.44048 * 181.23816 * 14 13 12 43 43 H 0.96999 * 119.99788 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58860 * 246.15139 * 25 11 9 45 45 H 1.09000 * 109.58464 * 6.58211 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2430 2.0166 1.1672 6 8 2.0412 1.4447 2.2175 7 6 2.7458 3.4372 1.1672 8 7 2.9079 3.8979 2.5484 9 6 3.3494 5.1472 2.7946 10 8 3.5268 5.9218 1.8744 11 7 3.5944 5.5379 4.0610 12 6 3.2763 4.6552 5.1917 13 6 2.3937 5.4187 6.1842 14 6 3.0887 6.7244 6.5784 15 6 3.2901 7.5958 5.3366 16 1 2.3237 7.8025 4.8766 17 6 3.9466 8.8930 5.7334 18 1 4.2719 9.0440 6.7521 19 6 4.1320 9.8869 4.7961 20 7 3.8245 9.6682 3.5361 21 14 4.8200 11.5441 5.3154 22 1 6.2895 11.5588 5.1021 23 1 4.1913 12.6173 4.5041 24 1 4.5260 11.7735 6.7529 25 6 4.1842 6.8550 4.3373 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.2919 1.9006 -1.5834 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1412 -1.1384 34 1 2.0282 4.0767 0.6532 35 1 3.7061 3.4827 0.6535 36 1 2.6975 3.3037 3.2856 37 1 2.7431 3.7760 4.8300 38 1 4.1980 4.3465 5.6848 39 1 1.4347 5.6456 5.7184 40 1 2.2320 4.8076 7.0720 41 1 4.0574 6.4976 7.0239 42 1 2.4729 7.2593 7.3015 43 1 3.9552 10.3673 2.8766 44 1 5.1798 6.7277 4.7624 45 1 4.2501 7.4272 3.4119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595586872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:14 Heat of formation + Delta-G solvation = -84.022036 kcal Electronic energy + Delta-G solvation = -24799.008791 eV Core-core repulsion = 21236.734583 eV Total energy + Delta-G solvation = -3562.274208 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60709 -40.76020 -38.48916 -37.02771 -35.69560 -35.06342 -33.44593 -32.37592 -31.52443 -28.93449 -27.57357 -26.94423 -25.81486 -23.95383 -23.43977 -21.71253 -20.82454 -20.17551 -19.18626 -18.28987 -17.95042 -17.35190 -17.22997 -16.87453 -16.46597 -16.15066 -15.45270 -15.21957 -15.12568 -14.79496 -14.59286 -14.50533 -14.29738 -14.05569 -13.94665 -13.60272 -13.47937 -13.39876 -13.03630 -12.89021 -12.86203 -12.64964 -12.31875 -12.20706 -11.95573 -11.85453 -11.62084 -11.24617 -11.06720 -10.92029 -10.83903 -10.52376 -10.29384 -9.78142 -9.29376 -8.07955 -6.24442 1.38123 1.42279 1.43091 1.51040 1.55090 2.08561 2.18434 2.44476 3.01390 3.21316 3.34928 4.01787 4.11836 4.14189 4.19939 4.24009 4.29235 4.31021 4.35396 4.54059 4.59638 4.70435 4.73548 4.80466 4.81927 4.84781 4.94165 4.99311 5.10469 5.23637 5.25622 5.28617 5.30488 5.36501 5.51383 5.58845 5.63358 5.88538 5.97384 6.12503 6.19041 6.37671 6.88759 6.92571 7.05594 7.45072 7.60842 8.96235 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.003231 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.297443 B = 8663.603391 C = 9436.027509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.608 5.608 4 C 0.064 3.936 5 C 0.513 3.487 6 O -0.570 6.570 7 C 0.121 3.879 8 N -0.733 5.733 9 C 0.698 3.302 10 O -0.631 6.631 11 N -0.626 5.626 12 C 0.110 3.890 13 C -0.126 4.126 14 C -0.104 4.104 15 C 0.038 3.962 16 H -0.013 1.013 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.913 5.913 21 Si 0.958 3.042 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.145 3.855 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.259 0.741 44 H 0.039 0.961 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -20.939 -7.469 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.341 5.341 4 C -0.078 4.078 5 C 0.301 3.699 6 O -0.450 6.450 7 C -0.007 4.007 8 N -0.395 5.395 9 C 0.400 3.600 10 O -0.512 6.512 11 N -0.361 5.361 12 C -0.013 4.013 13 C -0.164 4.164 14 C -0.142 4.142 15 C 0.019 3.981 16 H 0.005 0.995 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.552 5.552 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.187 1.187 25 C 0.023 3.977 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.249 0.751 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.196 -20.638 -7.780 22.452 hybrid contribution 0.161 1.089 0.246 1.128 sum -4.035 -19.550 -7.535 21.336 Atomic orbital electron populations 1.22095 0.95335 1.03150 1.01608 1.21633 0.94832 0.80949 1.04048 1.47941 1.64850 1.15080 1.06244 1.22178 1.03376 0.98057 0.84150 1.20509 0.77259 0.88033 0.84134 1.90657 1.53898 1.68127 1.32273 1.20983 1.03460 0.92127 0.84128 1.44865 1.72447 1.13311 1.08917 1.16007 0.78400 0.82013 0.83612 1.90885 1.61533 1.54207 1.44624 1.47679 1.65150 1.19291 1.04021 1.21824 1.00126 0.92134 0.87171 1.21912 0.97954 0.97004 0.99506 1.21511 0.99890 0.95200 0.97558 1.18925 0.93812 0.93118 0.92288 0.99494 1.21494 1.39978 0.99949 0.95967 0.91928 1.25917 0.95807 1.02483 0.94842 1.70134 1.48780 1.34267 1.02006 0.85539 0.78319 0.79261 0.78508 1.20145 1.21278 1.18716 1.21640 0.94608 0.79951 1.01532 0.94860 0.91453 0.89844 0.87160 0.91388 0.90571 0.88175 0.90636 0.88481 0.87938 0.75062 0.89280 0.89971 0.93454 0.87837 0.92225 0.92886 0.93148 0.94260 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 10.24 71.98 0.74 -1.32 16 2 C 0.11 1.41 6.13 86.38 0.53 1.94 16 3 N -0.61 -9.96 2.87 -846.74 -2.43 -12.40 16 4 C 0.06 0.63 10.24 127.77 1.31 1.94 16 5 C 0.51 12.25 7.74 87.66 0.68 12.92 16 6 O -0.57 -16.98 15.25 -3.05 -0.05 -17.02 16 7 C 0.12 3.19 4.71 85.63 0.40 3.60 16 8 N -0.73 -24.24 5.44 -482.31 -2.62 -26.87 16 9 C 0.70 30.19 8.29 179.06 1.49 31.67 16 10 O -0.63 -33.01 15.77 -3.98 -0.06 -33.07 16 11 N -0.63 -26.59 2.97 -836.88 -2.49 -29.08 16 12 C 0.11 3.48 6.38 86.36 0.55 4.03 16 13 C -0.13 -4.02 6.09 30.69 0.19 -3.83 16 14 C -0.10 -4.15 5.10 30.63 0.16 -4.00 16 15 C 0.04 1.97 2.20 -11.46 -0.03 1.94 16 16 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 17 C -0.54 -29.92 8.49 25.60 0.22 -29.71 16 18 H 0.06 3.35 7.75 -2.91 -0.02 3.33 16 19 C 0.01 0.52 5.36 84.65 0.45 0.97 16 20 N -0.91 -56.28 11.61 21.45 0.25 -56.03 16 21 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 C 0.15 7.45 5.48 86.36 0.47 7.92 16 26 H 0.03 0.60 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16 30 H 0.07 1.15 7.42 -2.39 -0.02 1.14 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.51 8.07 -2.38 -0.02 0.49 16 33 H 0.07 0.84 6.44 -2.38 -0.02 0.82 16 34 H 0.10 2.54 7.40 -2.39 -0.02 2.53 16 35 H 0.10 2.53 8.11 -2.39 -0.02 2.51 16 36 H 0.41 12.42 4.93 -92.71 -0.46 11.97 16 37 H 0.09 2.39 5.65 -2.39 -0.01 2.37 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 4.50 5.34 -2.39 -0.01 4.49 16 Total: -1.00 -78.01 358.28 2.30 -75.71 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.52 Total: 23.94 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 7.16 Total: 28.08 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -7.30 Total: -124.37 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.11 Total: -50.09 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -78.01 2.30 -75.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595586872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.313 kcal (2) G-P(sol) polarization free energy of solvation -78.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds