Wall clock time and date at job start Tue Mar 31 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47633 * 2 1 4 4 C 1.50709 * 109.47276 * 120.00096 * 2 1 3 5 5 O 1.21275 * 119.99834 * 93.30602 * 4 2 1 6 6 N 1.34776 * 119.99661 * 273.30569 * 4 2 1 7 7 C 1.46502 * 120.00006 * 0.02562 * 6 4 2 8 8 C 1.46499 * 120.00055 * 179.97438 * 6 4 2 9 9 C 1.50698 * 109.46865 * 90.00276 * 8 6 4 10 10 H 1.08002 * 119.99997 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00141 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00115 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99933 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47324 * 89.99992 * 13 11 9 15 15 H 1.48501 * 109.47347 * 209.99958 * 13 11 9 16 16 H 1.48505 * 109.47021 * 329.99998 * 13 11 9 17 17 N 1.46902 * 109.47262 * 239.99666 * 2 1 3 18 18 C 1.45594 * 110.99497 * 47.01329 * 17 2 1 19 19 C 1.53130 * 110.68879 * 59.69967 * 18 17 2 20 20 C 1.51487 * 108.56240 * 84.07269 * 19 18 17 21 21 O 1.21284 * 120.05446 * 110.18490 * 20 19 18 22 22 N 1.33626 * 119.89718 * 290.38574 * 20 19 18 23 23 C 1.46503 * 119.95278 * 179.52702 * 22 20 19 24 24 C 1.47259 * 120.10170 * 359.25917 * 22 20 19 25 25 C 1.45559 * 111.00394 * 177.60390 * 17 2 1 26 26 H 1.09000 * 109.47400 * 173.18861 * 1 2 3 27 27 H 1.09002 * 109.46745 * 293.18264 * 1 2 3 28 28 H 1.08993 * 109.47560 * 53.18484 * 1 2 3 29 29 H 1.08998 * 109.47678 * 89.99813 * 7 6 4 30 30 H 1.09005 * 109.46626 * 209.99442 * 7 6 4 31 31 H 1.09001 * 109.46910 * 329.99456 * 7 6 4 32 32 H 1.08997 * 109.47575 * 210.00634 * 8 6 4 33 33 H 1.09003 * 109.46986 * 330.00468 * 8 6 4 34 34 H 0.96998 * 119.99545 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.23090 * 180.02562 * 18 17 2 36 36 H 1.08999 * 109.23146 * 299.38155 * 18 17 2 37 37 H 1.09008 * 109.68177 * 203.86811 * 19 18 17 38 38 H 1.09003 * 109.68932 * 324.41779 * 19 18 17 39 39 H 1.08992 * 109.47483 * 269.73135 * 23 22 20 40 40 H 1.09008 * 109.46620 * 29.73105 * 23 22 20 41 41 H 1.09001 * 109.46955 * 149.72456 * 23 22 20 42 42 H 1.09010 * 109.61834 * 190.66195 * 24 22 20 43 43 H 1.08997 * 109.62177 * 311.21815 * 24 22 20 44 44 H 1.08995 * 109.20417 * 180.18418 * 25 17 2 45 45 H 1.08994 * 109.20009 * 60.88858 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.2916 -1.8943 1.1838 6 7 2.1935 -0.0302 2.3828 7 6 1.8798 1.3998 2.4392 8 6 2.6813 -0.7208 3.5791 9 6 4.1861 -0.6507 3.6210 10 1 4.7251 -0.1421 2.8354 11 6 4.8748 -1.2358 4.6624 12 7 6.1880 -1.1750 4.6987 13 14 3.9426 -2.1160 6.0209 14 1 3.7720 -3.5458 5.6581 15 1 4.7059 -2.0152 7.2907 16 1 2.6086 -1.4866 6.1940 17 7 2.0196 -0.6926 -1.1994 18 6 1.3198 -0.2319 -2.3901 19 6 1.5213 1.2732 -2.5878 20 6 2.8332 1.4929 -3.3126 21 8 2.8349 1.8882 -4.4592 22 7 3.9886 1.2467 -2.6880 23 6 5.2578 1.4489 -3.3913 24 6 3.9883 0.7782 -1.2920 25 6 3.4736 -0.6630 -1.2618 26 1 -0.3634 -1.0204 -0.1219 27 1 -0.3633 0.4046 0.9447 28 1 -0.3634 0.6158 -0.8226 29 1 0.8349 1.5318 2.7199 30 1 2.5185 1.8829 3.1787 31 1 2.0527 1.8485 1.4610 32 1 2.2704 -0.2422 4.4680 33 1 2.3669 -1.7641 3.5499 34 1 6.6724 -1.5863 5.4316 35 1 1.7042 -0.7633 -3.2606 36 1 0.2552 -0.4409 -2.2842 37 1 0.7020 1.6784 -3.1817 38 1 1.5530 1.7699 -1.6180 39 1 5.5467 0.5252 -3.8926 40 1 5.1415 2.2422 -4.1299 41 1 6.0295 1.7301 -2.6746 42 1 5.0025 0.8130 -0.8940 43 1 3.3352 1.4127 -0.6930 44 1 3.8044 -1.1807 -2.1621 45 1 3.8803 -1.1708 -0.3873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595788834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:31 Heat of formation + Delta-G solvation = -34.892533 kcal Electronic energy + Delta-G solvation = -26149.630028 eV Core-core repulsion = 22589.486235 eV Total energy + Delta-G solvation = -3560.143793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03388 -39.36984 -37.46841 -35.53570 -34.93885 -32.69617 -31.74090 -31.43703 -28.98955 -28.26659 -26.25062 -25.99149 -24.91170 -23.75248 -22.59333 -20.43673 -19.09266 -18.40850 -17.52741 -17.05272 -16.91807 -16.43767 -15.95604 -15.47736 -15.08332 -14.93304 -14.55054 -13.99454 -13.79992 -13.62771 -13.28771 -13.18559 -12.91569 -12.71557 -12.54880 -12.40310 -12.21793 -12.17564 -12.04584 -12.01013 -11.68972 -11.61767 -11.43223 -11.13435 -11.05284 -10.89050 -10.56148 -10.18363 -9.86974 -9.59834 -9.17457 -8.95313 -8.63700 -8.00849 -7.75669 -6.14237 -4.13130 2.50169 2.87379 3.20866 3.25950 3.31884 3.34180 3.54787 3.99025 4.26060 4.35382 4.62901 4.72399 4.85304 4.88650 4.97375 5.07446 5.12500 5.15559 5.20776 5.29572 5.35131 5.40586 5.41748 5.51283 5.62601 5.66355 5.68464 5.74205 5.77580 5.83591 6.02116 6.09541 6.16796 6.30946 6.61969 6.86580 6.97143 7.07924 7.27838 7.30016 7.55715 8.03176 8.18960 8.40955 8.86504 8.95620 9.46522 10.98950 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.004565 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.899925 B = 6132.221561 C = 6839.300818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.064 0.936 4 C 0.511 3.489 5 O -0.518 6.518 6 N -0.599 5.599 7 C 0.081 3.919 8 C 0.216 3.784 9 C -0.528 4.528 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.530 5.530 18 C 0.075 3.925 19 C -0.182 4.182 20 C 0.515 3.485 21 O -0.553 6.553 22 N -0.611 5.611 23 C 0.082 3.918 24 C 0.067 3.933 25 C 0.046 3.954 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 7.045 -11.180 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 H 0.082 0.918 4 C 0.296 3.704 5 O -0.393 6.393 6 N -0.332 5.332 7 C -0.063 4.063 8 C 0.096 3.904 9 C -0.567 4.567 10 H 0.091 0.909 11 C -0.129 4.129 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.253 5.253 18 C -0.054 4.054 19 C -0.224 4.224 20 C 0.303 3.697 21 O -0.432 6.432 22 N -0.344 5.344 23 C -0.060 4.060 24 C -0.057 4.057 25 C -0.083 4.083 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.209 6.074 -11.640 16.037 hybrid contribution 0.104 0.525 0.848 1.003 sum -9.104 6.599 -10.792 15.585 Atomic orbital electron populations 1.21854 0.92280 1.03644 1.02415 1.21746 0.97016 0.96296 0.90089 0.91840 1.20057 0.78843 0.87653 0.83805 1.90680 1.49554 1.15317 1.83745 1.47866 1.64563 1.09078 1.11663 1.21723 1.00092 0.82427 1.02054 1.19662 0.95656 0.93327 0.81801 1.21282 0.89350 1.36485 1.09545 0.90853 1.24845 0.94742 0.95494 0.97847 1.69889 1.06307 1.44874 1.32490 0.86859 0.80203 0.81019 0.81658 1.19871 1.21106 1.19083 1.59574 1.05982 1.58365 1.01336 1.21850 1.00624 0.90281 0.92619 1.22814 0.95796 1.01451 1.02343 1.20602 0.85835 0.76532 0.86700 1.90689 1.87713 1.46765 1.18016 1.47906 1.06454 1.66073 1.13999 1.21695 0.84622 1.01994 0.97699 1.22772 1.04292 0.97475 0.81125 1.22397 0.86239 0.94463 1.05176 0.90733 0.91490 0.91611 0.93502 0.90469 0.92519 0.95284 0.94519 0.92541 0.90269 0.88729 0.87891 0.89140 0.92604 0.90671 0.90964 0.88366 0.90423 0.89974 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.15 37.15 0.30 -1.22 16 2 C 0.06 0.78 1.04 -68.86 -0.07 0.71 16 3 H 0.06 0.74 2.42 -51.93 -0.13 0.62 16 4 C 0.51 9.47 5.90 -10.98 -0.06 9.41 16 5 O -0.52 -11.97 15.21 5.56 0.08 -11.89 16 6 N -0.60 -11.29 2.86 -182.95 -0.52 -11.81 16 7 C 0.08 1.12 10.15 59.85 0.61 1.72 16 8 C 0.22 5.00 4.23 -5.20 -0.02 4.98 16 9 C -0.53 -14.38 9.94 -34.44 -0.34 -14.72 16 10 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 13 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 17 N -0.53 -7.03 4.15 -230.13 -0.96 -7.99 16 18 C 0.07 0.79 5.06 -4.46 -0.02 0.77 16 19 C -0.18 -1.85 4.92 -27.43 -0.13 -1.99 16 20 C 0.52 6.79 6.84 -11.11 -0.08 6.71 16 21 O -0.55 -9.11 16.64 5.55 0.09 -9.02 16 22 N -0.61 -7.38 2.87 -180.90 -0.52 -7.90 16 23 C 0.08 0.87 10.44 59.85 0.62 1.50 16 24 C 0.07 0.81 5.83 -3.60 -0.02 0.79 16 25 C 0.05 0.63 5.34 -4.52 -0.02 0.61 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 28 H 0.06 0.52 6.31 -51.93 -0.33 0.19 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.06 0.63 5.82 -51.93 -0.30 0.33 16 32 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 33 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.08 0.88 7.88 -51.93 -0.41 0.48 16 36 H 0.09 0.85 6.34 -51.93 -0.33 0.52 16 37 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.09 0.85 5.17 -51.93 -0.27 0.58 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.84 7.39 -51.92 -0.38 0.46 16 41 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 42 H 0.10 1.16 7.78 -51.92 -0.40 0.75 16 43 H 0.08 0.91 4.84 -51.93 -0.25 0.66 16 44 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 45 H 0.11 1.86 6.50 -51.93 -0.34 1.53 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -34.50 342.59 -6.70 -41.21 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.81 Total: 0.69 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 0.66 Total: 11.24 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -1.22 Total: -53.66 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.18 Total: -20.91 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.50 -6.70 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595788834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.313 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds