Wall clock time and date at job start Tue Mar 31 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47633 * 2 1 4 4 C 1.50709 * 109.47276 * 120.00096 * 2 1 3 5 5 O 1.21275 * 119.99834 * 93.30602 * 4 2 1 6 6 N 1.34776 * 119.99661 * 273.30569 * 4 2 1 7 7 C 1.46502 * 120.00006 * 0.02562 * 6 4 2 8 8 C 1.46499 * 120.00055 * 179.97438 * 6 4 2 9 9 C 1.50698 * 109.46865 * 90.00276 * 8 6 4 10 10 H 1.08002 * 119.99997 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00141 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00115 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99933 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47324 * 89.99992 * 13 11 9 15 15 H 1.48501 * 109.47347 * 209.99958 * 13 11 9 16 16 H 1.48505 * 109.47021 * 329.99998 * 13 11 9 17 17 N 1.46902 * 109.47262 * 239.99666 * 2 1 3 18 18 C 1.45594 * 110.99497 * 47.01329 * 17 2 1 19 19 C 1.53130 * 110.68879 * 59.69967 * 18 17 2 20 20 C 1.51487 * 108.56240 * 84.07269 * 19 18 17 21 21 O 1.21284 * 120.05446 * 110.18490 * 20 19 18 22 22 N 1.33626 * 119.89718 * 290.38574 * 20 19 18 23 23 C 1.46503 * 119.95278 * 179.52702 * 22 20 19 24 24 C 1.47259 * 120.10170 * 359.25917 * 22 20 19 25 25 C 1.45559 * 111.00394 * 177.60390 * 17 2 1 26 26 H 1.09000 * 109.47400 * 173.18861 * 1 2 3 27 27 H 1.09002 * 109.46745 * 293.18264 * 1 2 3 28 28 H 1.08993 * 109.47560 * 53.18484 * 1 2 3 29 29 H 1.08998 * 109.47678 * 89.99813 * 7 6 4 30 30 H 1.09005 * 109.46626 * 209.99442 * 7 6 4 31 31 H 1.09001 * 109.46910 * 329.99456 * 7 6 4 32 32 H 1.08997 * 109.47575 * 210.00634 * 8 6 4 33 33 H 1.09003 * 109.46986 * 330.00468 * 8 6 4 34 34 H 0.96998 * 119.99545 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.23090 * 180.02562 * 18 17 2 36 36 H 1.08999 * 109.23146 * 299.38155 * 18 17 2 37 37 H 1.09008 * 109.68177 * 203.86811 * 19 18 17 38 38 H 1.09003 * 109.68932 * 324.41779 * 19 18 17 39 39 H 1.08992 * 109.47483 * 269.73135 * 23 22 20 40 40 H 1.09008 * 109.46620 * 29.73105 * 23 22 20 41 41 H 1.09001 * 109.46955 * 149.72456 * 23 22 20 42 42 H 1.09010 * 109.61834 * 190.66195 * 24 22 20 43 43 H 1.08997 * 109.62177 * 311.21815 * 24 22 20 44 44 H 1.08995 * 109.20417 * 180.18418 * 25 17 2 45 45 H 1.08994 * 109.20009 * 60.88858 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.2916 -1.8943 1.1838 6 7 2.1935 -0.0302 2.3828 7 6 1.8798 1.3998 2.4392 8 6 2.6813 -0.7208 3.5791 9 6 4.1861 -0.6507 3.6210 10 1 4.7251 -0.1421 2.8354 11 6 4.8748 -1.2358 4.6624 12 7 6.1880 -1.1750 4.6987 13 14 3.9426 -2.1160 6.0209 14 1 3.7720 -3.5458 5.6581 15 1 4.7059 -2.0152 7.2907 16 1 2.6086 -1.4866 6.1940 17 7 2.0196 -0.6926 -1.1994 18 6 1.3198 -0.2319 -2.3901 19 6 1.5213 1.2732 -2.5878 20 6 2.8332 1.4929 -3.3126 21 8 2.8349 1.8882 -4.4592 22 7 3.9886 1.2467 -2.6880 23 6 5.2578 1.4489 -3.3913 24 6 3.9883 0.7782 -1.2920 25 6 3.4736 -0.6630 -1.2618 26 1 -0.3634 -1.0204 -0.1219 27 1 -0.3633 0.4046 0.9447 28 1 -0.3634 0.6158 -0.8226 29 1 0.8349 1.5318 2.7199 30 1 2.5185 1.8829 3.1787 31 1 2.0527 1.8485 1.4610 32 1 2.2704 -0.2422 4.4680 33 1 2.3669 -1.7641 3.5499 34 1 6.6724 -1.5863 5.4316 35 1 1.7042 -0.7633 -3.2606 36 1 0.2552 -0.4409 -2.2842 37 1 0.7020 1.6784 -3.1817 38 1 1.5530 1.7699 -1.6180 39 1 5.5467 0.5252 -3.8926 40 1 5.1415 2.2422 -4.1299 41 1 6.0295 1.7301 -2.6746 42 1 5.0025 0.8130 -0.8940 43 1 3.3352 1.4127 -0.6930 44 1 3.8044 -1.1807 -2.1621 45 1 3.8803 -1.1708 -0.3873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595788834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:30 Heat of formation + Delta-G solvation = -61.164068 kcal Electronic energy + Delta-G solvation = -26150.769247 eV Core-core repulsion = 22589.486235 eV Total energy + Delta-G solvation = -3561.283013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09605 -40.65153 -38.67774 -36.61088 -36.46579 -34.68662 -32.81305 -32.48206 -30.44762 -29.51209 -27.40545 -27.08392 -26.04518 -24.85406 -24.16290 -21.72158 -20.06459 -19.64832 -19.09293 -18.68861 -18.04695 -17.59435 -17.11469 -16.56836 -16.52416 -16.27683 -15.91394 -15.37712 -15.03596 -14.77427 -14.48547 -14.28144 -14.21628 -13.95927 -13.69825 -13.60387 -13.50857 -13.31496 -13.15075 -13.02476 -12.97312 -12.84563 -12.56890 -12.48348 -12.38242 -12.10565 -12.08088 -11.90799 -11.70002 -10.90871 -10.79665 -10.47869 -10.12477 -9.32283 -9.02853 -8.30807 -6.34496 1.35023 1.39018 1.46443 1.49373 1.83671 1.92577 2.26472 2.33546 2.85744 3.04599 3.33916 3.61195 3.66960 3.84944 3.94997 4.03171 4.09443 4.22972 4.25097 4.32122 4.46524 4.49348 4.53170 4.56113 4.69339 4.77799 4.80356 4.82348 4.89367 4.91215 4.95927 4.98252 4.99680 5.03852 5.31276 5.33783 5.49831 5.65484 5.92058 6.09479 6.28239 6.32161 6.66700 6.78176 7.03192 7.26852 7.53076 8.85598 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.004565 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.899925 B = 6132.221561 C = 6839.300818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.086 0.914 4 C 0.504 3.496 5 O -0.575 6.575 6 N -0.607 5.607 7 C 0.073 3.927 8 C 0.224 3.776 9 C -0.528 4.528 10 H 0.034 0.966 11 C 0.013 3.987 12 N -0.945 5.945 13 Si 0.942 3.058 14 H -0.279 1.279 15 H -0.278 1.278 16 H -0.237 1.237 17 N -0.547 5.547 18 C 0.080 3.920 19 C -0.172 4.172 20 C 0.508 3.492 21 O -0.590 6.590 22 N -0.610 5.610 23 C 0.078 3.922 24 C 0.077 3.923 25 C 0.054 3.946 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.297 8.582 -11.094 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 H 0.103 0.897 4 C 0.292 3.708 5 O -0.454 6.454 6 N -0.339 5.339 7 C -0.069 4.069 8 C 0.101 3.899 9 C -0.567 4.567 10 H 0.052 0.948 11 C -0.185 4.185 12 N -0.585 5.585 13 Si 0.765 3.235 14 H -0.205 1.205 15 H -0.204 1.204 16 H -0.161 1.161 17 N -0.270 5.270 18 C -0.048 4.048 19 C -0.214 4.214 20 C 0.298 3.702 21 O -0.472 6.472 22 N -0.342 5.342 23 C -0.064 4.064 24 C -0.047 4.047 25 C -0.075 4.075 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.103 7.663 -11.558 18.406 hybrid contribution 1.079 0.044 0.739 1.309 sum -11.024 7.707 -10.818 17.262 Atomic orbital electron populations 1.21916 0.89517 1.03826 1.04611 1.21713 0.98882 0.96033 0.87232 0.89706 1.21074 0.77534 0.87258 0.84977 1.90648 1.51969 1.18083 1.84720 1.47953 1.64123 1.11162 1.10630 1.22045 1.01954 0.79172 1.03690 1.19311 0.92843 0.93134 0.84614 1.21536 0.91698 1.35353 1.08117 0.94790 1.25771 0.95557 0.96429 1.00751 1.70038 1.08216 1.46534 1.33746 0.85802 0.80142 0.79207 0.78329 1.20518 1.20376 1.16052 1.59484 1.05464 1.59537 1.02513 1.21907 1.01493 0.90492 0.90900 1.22822 0.94554 1.01017 1.02969 1.21205 0.86928 0.75717 0.86396 1.90676 1.88270 1.48568 1.19652 1.47976 1.06959 1.65353 1.13880 1.21795 0.84628 1.01955 0.98023 1.22633 1.04379 0.96375 0.81294 1.22134 0.87173 0.95200 1.02969 0.92016 0.90369 0.87949 0.89963 0.91483 0.89632 0.93358 0.96584 0.92454 0.91081 0.86167 0.85890 0.87630 0.92387 0.91263 0.89314 0.88505 0.89393 0.90172 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.15 71.98 0.59 -1.80 16 2 C 0.07 1.71 1.04 44.17 0.05 1.76 16 3 H 0.09 1.65 2.42 -2.39 -0.01 1.64 16 4 C 0.50 18.38 5.90 87.66 0.52 18.89 16 5 O -0.58 -27.35 15.21 -3.01 -0.05 -27.40 16 6 N -0.61 -22.18 2.86 -851.12 -2.43 -24.61 16 7 C 0.07 1.79 10.15 127.77 1.30 3.08 16 8 C 0.22 10.27 4.23 85.63 0.36 10.63 16 9 C -0.53 -29.52 9.94 25.60 0.25 -29.26 16 10 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 11 C 0.01 0.74 5.47 84.65 0.46 1.20 16 12 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 13 Si 0.94 43.28 27.47 68.60 1.88 45.16 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 17 N -0.55 -13.72 4.15 -882.00 -3.66 -17.38 16 18 C 0.08 1.45 5.06 86.59 0.44 1.89 16 19 C -0.17 -2.87 4.92 30.14 0.15 -2.72 16 20 C 0.51 12.42 6.84 88.09 0.60 13.02 16 21 O -0.59 -18.72 16.64 -3.04 -0.05 -18.77 16 22 N -0.61 -13.98 2.87 -845.29 -2.43 -16.41 16 23 C 0.08 1.61 10.44 127.77 1.33 2.94 16 24 C 0.08 1.79 5.83 86.26 0.50 2.30 16 25 C 0.05 1.52 5.34 86.58 0.46 1.98 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.19 8.02 -2.39 -0.02 1.17 16 28 H 0.10 1.01 6.31 -2.39 -0.02 1.00 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.79 8.07 -2.38 -0.02 1.77 16 31 H 0.09 1.56 5.82 -2.39 -0.01 1.55 16 32 H 0.05 2.04 7.13 -2.39 -0.02 2.02 16 33 H 0.02 0.81 6.85 -2.39 -0.02 0.79 16 34 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.07 1.45 7.88 -2.39 -0.02 1.43 16 36 H 0.12 1.63 6.34 -2.39 -0.02 1.62 16 37 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.11 1.46 5.17 -2.39 -0.01 1.45 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.52 7.39 -2.38 -0.02 1.51 16 41 H 0.09 1.50 7.86 -2.39 -0.02 1.48 16 42 H 0.10 2.28 7.78 -2.38 -0.02 2.26 16 43 H 0.09 1.84 4.84 -2.39 -0.01 1.83 16 44 H 0.08 2.20 8.05 -2.39 -0.02 2.19 16 45 H 0.06 2.37 6.50 -2.39 -0.02 2.35 16 Total: -1.00 -79.73 342.59 1.52 -78.22 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.94 Total: 15.06 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 7.01 Total: 23.92 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -8.22 Total: -116.18 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.10 Total: -46.17 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Total: -79.73 1.52 -78.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595788834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.051 kcal (2) G-P(sol) polarization free energy of solvation -79.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds