Wall clock time and date at job start Tue Mar 31 2020 03:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 119.99803 * 2 1 4 4 N 1.34774 * 119.99952 * 179.97438 * 2 1 3 5 5 C 1.47030 * 125.64670 * 359.96531 * 4 2 1 6 6 C 1.54328 * 107.26712 * 181.09011 * 5 4 2 7 7 C 1.55153 * 102.94392 * 22.19385 * 6 5 4 8 8 H 1.08998 * 111.04148 * 82.58358 * 7 6 5 9 9 N 1.46501 * 111.00753 * 206.42321 * 7 6 5 10 10 C 1.34771 * 120.00562 * 198.65272 * 9 7 6 11 11 O 1.21586 * 119.99509 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00489 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00178 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47049 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47131 * 59.99994 * 14 13 12 16 16 C 1.53004 * 109.46948 * 299.99795 * 14 13 12 17 17 C 1.50698 * 109.47083 * 180.02562 * 14 13 12 18 18 H 1.07993 * 119.99967 * 358.13034 * 17 14 13 19 19 C 1.37878 * 119.99967 * 178.13509 * 17 14 13 20 20 N 1.31516 * 119.99877 * 7.03896 * 19 17 14 21 21 Si 1.86802 * 120.00213 * 187.31763 * 19 17 14 22 22 H 1.48506 * 109.47187 * 264.84912 * 21 19 17 23 23 H 1.48508 * 109.46837 * 24.84586 * 21 19 17 24 24 H 1.48492 * 109.47284 * 144.84431 * 21 19 17 25 25 C 1.47420 * 125.64965 * 179.97438 * 4 2 1 26 26 H 1.09004 * 109.47204 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47208 * 300.00105 * 1 2 3 28 28 H 1.08999 * 109.47048 * 60.00639 * 1 2 3 29 29 H 1.08999 * 109.88132 * 300.50366 * 5 4 2 30 30 H 1.09000 * 109.88143 * 61.51987 * 5 4 2 31 31 H 1.08990 * 110.71915 * 263.82473 * 6 5 4 32 32 H 1.09007 * 110.71605 * 140.55385 * 6 5 4 33 33 H 0.97005 * 119.99398 * 18.64788 * 9 7 6 34 34 H 0.97005 * 119.99471 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.47215 * 59.99769 * 13 12 10 36 36 H 1.08992 * 109.47187 * 299.99684 * 13 12 10 37 37 H 1.09001 * 109.47279 * 185.88989 * 15 14 13 38 38 H 1.08999 * 109.47136 * 305.88769 * 15 14 13 39 39 H 1.09003 * 109.47013 * 65.88740 * 15 14 13 40 40 H 1.08995 * 109.47774 * 300.00004 * 16 14 13 41 41 H 1.09001 * 109.46899 * 60.00264 * 16 14 13 42 42 H 1.09002 * 109.46791 * 179.97438 * 16 14 13 43 43 H 0.97006 * 119.99601 * 180.27749 * 20 19 17 44 44 H 1.09003 * 110.36229 * 37.00118 * 25 4 2 45 45 H 1.09002 * 110.36763 * 274.68076 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5746 -2.5067 0.0018 6 6 2.7281 -3.5316 0.0300 7 6 3.9081 -2.7108 0.6141 8 1 3.8592 -2.6752 1.7024 9 7 5.1948 -3.2494 0.1665 10 6 6.3240 -2.9396 0.8338 11 8 6.2748 -2.2126 1.8072 12 7 7.5078 -3.4347 0.4217 13 6 8.7352 -3.0975 1.1468 14 6 9.9277 -3.7843 0.4780 15 6 10.0440 -3.3074 -0.9711 16 6 9.7219 -5.3002 0.5012 17 6 11.1903 -3.4378 1.2243 18 1 11.1508 -2.7683 2.0707 19 6 12.3959 -3.9756 0.8263 20 7 12.4684 -4.6778 -0.2833 21 14 13.9247 -3.7132 1.8672 22 1 14.6820 -2.5456 1.3489 23 1 13.5272 -3.4599 3.2755 24 1 14.7801 -4.9254 1.8047 25 6 3.6479 -1.3123 0.0001 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.9482 -2.6291 0.8854 30 1 0.9760 -2.6435 -0.8987 31 1 2.9605 -3.8783 -0.9767 32 1 2.4825 -4.3707 0.6810 33 1 5.2341 -3.8292 -0.6102 34 1 7.5471 -4.0145 -0.3551 35 1 8.6525 -3.4376 2.1791 36 1 8.8816 -2.0175 1.1307 37 1 10.8264 -3.8723 -1.4778 38 1 9.0941 -3.4635 -1.4823 39 1 10.2944 -2.2466 -0.9855 40 1 9.6391 -5.6400 1.5335 41 1 8.8086 -5.5512 -0.0384 42 1 10.5713 -5.7895 0.0243 43 1 13.3158 -5.0595 -0.5611 44 1 4.1060 -0.5371 0.6144 45 1 4.0333 -1.2674 -1.0186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598653712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:25 Heat of formation + Delta-G solvation = -67.960590 kcal Electronic energy + Delta-G solvation = -24317.214839 eV Core-core repulsion = 20755.637107 eV Total energy + Delta-G solvation = -3561.577732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.47192 -39.47516 -37.70483 -36.36657 -34.19447 -33.25692 -31.45052 -30.59644 -30.17117 -28.04731 -25.73022 -25.55987 -24.81345 -23.68695 -21.54293 -20.63346 -19.61161 -18.79706 -18.19851 -17.31842 -16.86552 -15.81838 -15.75321 -15.45261 -14.99552 -14.74755 -14.56577 -14.08239 -13.81989 -13.54935 -13.32708 -13.04373 -12.92330 -12.85047 -12.79952 -12.28697 -12.19391 -12.07026 -11.76920 -11.41462 -11.19616 -11.16954 -10.86454 -10.67109 -10.38608 -10.21166 -10.14314 -9.83857 -9.62524 -9.31623 -9.17832 -8.89810 -8.80407 -8.40189 -8.22650 -6.02574 -4.10590 2.38193 2.56282 3.10528 3.28755 3.36360 3.41630 3.53903 4.06523 4.20815 4.39522 4.52070 4.58680 4.68629 4.87043 4.92639 5.00633 5.07284 5.12909 5.24811 5.37606 5.44451 5.53429 5.77383 5.81542 5.92265 6.20293 6.36578 6.50138 6.54716 6.79052 6.82140 6.89033 7.02656 7.07640 7.22129 7.26111 7.39465 7.55665 7.70924 7.90963 7.99620 8.12159 8.37041 8.44047 8.88609 8.99193 9.54645 10.99496 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.002627 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.496634 B =10654.679930 C =10972.681496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.524 3.476 3 O -0.543 6.543 4 N -0.620 5.620 5 C 0.104 3.896 6 C -0.139 4.139 7 C 0.158 3.842 8 H 0.103 0.897 9 N -0.744 5.744 10 C 0.698 3.302 11 O -0.595 6.595 12 N -0.731 5.731 13 C 0.150 3.850 14 C 0.056 3.944 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.892 3.108 22 H -0.282 1.282 23 H -0.273 1.273 24 H -0.286 1.286 25 C 0.091 3.909 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.004 0.996 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.007 0.993 42 H 0.080 0.920 43 H 0.259 0.741 44 H 0.086 0.914 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.392 -1.439 -3.450 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.314 3.686 3 O -0.420 6.420 4 N -0.356 5.356 5 C -0.020 4.020 6 C -0.178 4.178 7 C 0.050 3.950 8 H 0.121 0.879 9 N -0.400 5.400 10 C 0.397 3.603 11 O -0.473 6.473 12 N -0.385 5.385 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.720 3.280 22 H -0.208 1.208 23 H -0.198 1.198 24 H -0.212 1.212 25 C -0.033 4.033 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.230 0.770 34 H 0.229 0.771 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.022 0.978 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.026 0.974 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.969 -0.226 -2.631 23.120 hybrid contribution 0.886 -0.514 -0.276 1.061 sum -22.082 -0.739 -2.908 22.285 Atomic orbital electron populations 1.21872 0.91331 1.04278 1.05310 1.20531 0.90341 0.82042 0.75706 1.90758 1.70692 1.30638 1.49943 1.48511 1.07548 1.05790 1.73743 1.22030 0.96205 0.81571 1.02185 1.22940 0.94062 0.97932 1.02842 1.21745 0.81757 0.91314 1.00146 0.87872 1.44974 1.05481 1.55192 1.34379 1.16083 0.80558 0.80800 0.82816 1.90907 1.85934 1.41703 1.28801 1.45516 1.06030 1.52945 1.34026 1.21590 0.81475 0.99384 0.94837 1.18367 0.91069 0.91934 0.93111 1.21855 0.98551 1.00141 0.98078 1.21790 0.99131 0.98836 0.98883 1.20976 0.91054 1.28332 1.14153 0.92379 1.24874 0.98677 0.95088 0.94805 1.69848 1.25572 1.35531 1.21409 0.86583 0.82896 0.77559 0.80995 1.20826 1.19819 1.21222 1.22725 0.80010 0.98863 1.01700 0.90500 0.88657 0.88729 0.90802 0.90823 0.89703 0.88939 0.76978 0.77145 0.92880 0.92878 0.89684 0.97755 0.95238 0.95349 0.97399 0.90117 0.93072 0.89516 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.21 36.01 0.37 -0.67 16 2 C 0.52 5.94 7.96 -10.98 -0.09 5.85 16 3 O -0.54 -8.94 17.35 5.56 0.10 -8.84 16 4 N -0.62 -6.14 3.33 -170.50 -0.57 -6.71 16 5 C 0.10 0.59 5.81 -3.06 -0.02 0.57 16 6 C -0.14 -0.81 6.58 -24.90 -0.16 -0.98 16 7 C 0.16 1.64 3.32 -65.77 -0.22 1.42 16 8 H 0.10 1.27 7.73 -51.93 -0.40 0.87 16 9 N -0.74 -8.74 5.23 -56.57 -0.30 -9.04 16 10 C 0.70 11.90 8.56 -86.93 -0.74 11.15 16 11 O -0.60 -12.67 16.09 5.29 0.09 -12.59 16 12 N -0.73 -12.72 4.91 -65.23 -0.32 -13.04 16 13 C 0.15 3.19 4.50 -4.04 -0.02 3.17 16 14 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 15 C -0.13 -2.89 8.07 37.16 0.30 -2.59 16 16 C -0.13 -2.84 8.06 37.16 0.30 -2.54 16 17 C -0.51 -13.27 8.00 -34.44 -0.28 -13.55 16 18 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 19 C 0.07 1.76 5.12 -17.82 -0.09 1.67 16 20 N -0.89 -23.53 9.48 55.43 0.53 -23.01 16 21 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.09 1.10 6.60 -2.52 -0.02 1.08 16 26 H 0.08 0.28 6.60 -51.93 -0.34 -0.06 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.31 8.02 -51.93 -0.42 -0.10 16 30 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.08 0.40 8.00 -51.93 -0.42 -0.01 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.40 3.48 8.53 -40.82 -0.35 3.13 16 34 H 0.39 6.04 6.17 -40.82 -0.25 5.79 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.08 2.10 6.16 -51.93 -0.32 1.78 16 38 H 0.00 0.07 6.71 -51.93 -0.35 -0.28 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 42 H 0.08 1.97 6.20 -51.93 -0.32 1.65 16 43 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.09 1.34 8.04 -51.93 -0.42 0.93 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -33.14 358.86 -8.12 -41.26 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.28 Total: 5.02 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.74 Total: 5.80 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.66 Total: -51.80 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.18 Total: -21.43 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.14 -8.12 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598653712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.702 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds