Wall clock time and date at job start Tue Mar 31 2020 03:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46784 * 2 1 4 4 C 1.34777 * 120.00115 * 179.97438 * 3 2 1 5 5 O 1.21288 * 119.99593 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00369 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47466 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47074 * 120.88261 * 359.72571 * 10 8 7 12 12 C 1.53695 * 108.27576 * 128.74910 * 11 10 8 13 13 N 1.46904 * 109.25420 * 54.08473 * 12 11 10 14 14 C 1.46897 * 110.99901 * 172.60509 * 13 12 11 15 15 C 1.50703 * 109.47428 * 294.29982 * 14 13 12 16 16 H 1.08006 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00179 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00343 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47017 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47139 * 120.00117 * 19 17 15 22 22 H 1.48502 * 109.47245 * 240.00289 * 19 17 15 23 23 C 1.46897 * 111.26792 * 296.75440 * 13 12 11 24 24 C 1.47075 * 120.87669 * 180.02562 * 10 8 7 25 25 H 1.09001 * 109.46962 * 59.99999 * 1 2 3 26 26 H 1.08996 * 109.46524 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47457 * 299.99933 * 1 2 3 28 28 H 1.09002 * 109.47193 * 240.00557 * 2 1 3 29 29 H 1.08992 * 109.47333 * 119.99556 * 2 1 3 30 30 H 0.97003 * 120.00244 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.47120 * 59.99760 * 6 4 3 32 32 H 1.08998 * 109.46862 * 300.00562 * 6 4 3 33 33 H 1.09002 * 109.47153 * 59.99773 * 7 6 4 34 34 H 1.09001 * 109.46832 * 299.99964 * 7 6 4 35 35 H 1.08994 * 109.63016 * 248.52290 * 11 10 8 36 36 H 1.09001 * 109.62513 * 9.10199 * 11 10 8 37 37 H 1.08997 * 109.65385 * 294.08176 * 12 11 10 38 38 H 1.08999 * 109.42153 * 173.94686 * 12 11 10 39 39 H 1.08994 * 109.47420 * 54.30050 * 14 13 12 40 40 H 1.08997 * 109.47407 * 174.29955 * 14 13 12 41 41 H 0.96998 * 120.00461 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.49120 * 303.14081 * 23 13 12 43 43 H 1.09003 * 109.48945 * 183.06528 * 23 13 12 44 44 H 1.09003 * 109.63301 * 350.89825 * 24 10 8 45 45 H 1.09003 * 109.62726 * 111.48107 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6277 0.0005 5 8 4.1315 0.7058 0.0005 6 6 3.8457 3.0485 0.0011 7 6 5.3756 3.0486 0.0010 8 6 5.8779 4.4694 0.0009 9 8 5.0897 5.3912 0.0015 10 7 7.2030 4.7157 0.0013 11 6 8.1759 3.6128 0.0079 12 6 9.1811 3.8500 -1.1303 13 7 9.7631 5.1916 -0.9908 14 6 10.8549 5.3944 -1.9524 15 6 11.9944 4.4652 -1.6221 16 1 11.9153 3.7910 -0.7820 17 6 13.1375 4.4749 -2.3929 18 7 13.2337 5.2955 -3.4162 19 14 14.5497 3.3226 -1.9839 20 1 14.1944 2.5068 -0.7950 21 1 14.8079 2.4264 -3.1394 22 1 15.7693 4.1182 -1.6923 23 6 8.7379 6.2343 -1.1306 24 6 7.7144 6.0947 0.0019 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 1.3880 2.1186 -0.0004 31 1 3.4820 3.5620 0.8911 32 1 3.4825 3.5625 -0.8888 33 1 5.7390 2.5351 -0.8892 34 1 5.7390 2.5344 0.8907 35 1 8.6988 3.5914 0.9640 36 1 7.6579 2.6668 -0.1506 37 1 8.6722 3.7724 -2.0910 38 1 9.9728 3.1027 -1.0762 39 1 10.4954 5.1847 -2.9598 40 1 11.2003 6.4267 -1.8976 41 1 14.0380 5.3026 -3.9583 42 1 8.2351 6.1235 -2.0914 43 1 9.2081 7.2162 -1.0768 44 1 6.8913 6.7906 -0.1606 45 1 8.1940 6.3070 0.9574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:03 Heat of formation + Delta-G solvation = -100.209265 kcal Electronic energy + Delta-G solvation = -23954.048926 eV Core-core repulsion = 20391.072787 eV Total energy + Delta-G solvation = -3562.976139 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38219 -40.57542 -38.97788 -36.31869 -35.96779 -34.46813 -33.99699 -32.17156 -31.31089 -30.01468 -27.68873 -26.29093 -24.63553 -23.91048 -23.34603 -22.02247 -21.30044 -19.78999 -18.70322 -18.49506 -17.54601 -17.21736 -16.91913 -16.66865 -16.61125 -16.36791 -16.00231 -15.57291 -15.31764 -15.25857 -14.83869 -14.46741 -14.25676 -14.12207 -13.72446 -13.50650 -13.35908 -13.08477 -12.86494 -12.74748 -12.68096 -12.60728 -12.38824 -12.37142 -12.28175 -12.15413 -12.10344 -11.76854 -11.27055 -10.93899 -10.84623 -10.62820 -10.09086 -9.76536 -9.06443 -8.20611 -6.30781 1.42831 1.43618 1.56848 1.57318 1.61822 1.87215 2.32169 2.41048 3.11911 3.22777 3.44265 3.77033 3.99074 4.02649 4.06879 4.09838 4.20287 4.23789 4.24098 4.30966 4.43902 4.52238 4.53168 4.66622 4.74321 4.82588 4.87994 4.93551 4.94663 4.97447 5.02028 5.06711 5.18942 5.23283 5.27274 5.44775 5.48998 5.64129 6.02224 6.22106 6.41689 6.53846 6.56199 6.85409 7.08879 7.24321 7.39249 8.90900 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002656 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.544626 B =10539.446412 C =11448.945064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.109 3.891 3 N -0.722 5.722 4 C 0.513 3.487 5 O -0.582 6.582 6 C -0.116 4.116 7 C -0.119 4.119 8 C 0.517 3.483 9 O -0.579 6.579 10 N -0.612 5.612 11 C 0.119 3.881 12 C 0.049 3.951 13 N -0.539 5.539 14 C 0.207 3.793 15 C -0.520 4.520 16 H 0.069 0.931 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.042 3.958 24 C 0.127 3.873 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.416 0.584 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.015 0.985 38 H 0.085 0.915 39 H -0.041 1.041 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.015 0.985 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.684 -7.711 8.809 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.015 4.015 3 N -0.375 5.375 4 C 0.300 3.700 5 O -0.463 6.463 6 C -0.156 4.156 7 C -0.159 4.159 8 C 0.307 3.693 9 O -0.460 6.460 10 N -0.345 5.345 11 C -0.003 4.003 12 C -0.080 4.080 13 N -0.264 5.264 14 C 0.081 3.919 15 C -0.558 4.558 16 H 0.087 0.913 17 C -0.199 4.199 18 N -0.577 5.577 19 Si 0.796 3.204 20 H -0.183 1.183 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.087 4.087 24 C 0.004 3.996 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.253 0.747 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.033 0.967 38 H 0.103 0.897 39 H -0.024 1.024 40 H 0.024 0.976 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.258 -7.813 9.148 27.078 hybrid contribution 0.650 0.110 -1.291 1.449 sum -23.608 -7.703 7.858 26.047 Atomic orbital electron populations 1.21957 0.91993 1.04129 1.03309 1.21380 0.96173 0.82480 1.01434 1.46030 1.06730 1.09922 1.74786 1.20918 0.82692 0.91539 0.74836 1.90710 1.56432 1.47773 1.51346 1.21314 0.94771 0.92758 1.06773 1.21373 0.96198 0.92081 1.06289 1.21021 0.81320 0.92207 0.74784 1.90643 1.55281 1.47675 1.52353 1.48319 1.05873 1.08041 1.72256 1.22101 0.89306 0.89654 0.99244 1.22460 0.97122 0.92162 0.96294 1.62013 1.09544 1.02251 1.52560 1.19389 0.88885 0.96045 0.87585 1.21487 1.00192 1.20857 1.13261 0.91252 1.25947 1.01558 0.97602 0.94775 1.70098 1.29208 1.39272 1.19104 0.85305 0.78314 0.78418 0.78401 1.18284 1.20668 1.20659 1.22459 0.92912 0.96637 0.96658 1.21622 0.96034 0.83243 0.98676 0.91247 0.89912 0.91061 0.92711 0.92451 0.74667 0.86840 0.87449 0.88092 0.87118 0.89462 0.86902 0.96691 0.89667 1.02354 0.97605 0.92750 0.96715 0.90033 0.88890 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.03 71.98 0.72 -0.15 16 2 C 0.11 1.32 6.39 86.38 0.55 1.87 16 3 N -0.72 -9.15 5.56 -463.05 -2.57 -11.72 16 4 C 0.51 9.73 7.83 87.66 0.69 10.42 16 5 O -0.58 -15.88 15.98 -3.05 -0.05 -15.92 16 6 C -0.12 -1.96 4.99 29.85 0.15 -1.81 16 7 C -0.12 -2.46 3.35 29.85 0.10 -2.36 16 8 C 0.52 13.76 7.71 87.66 0.68 14.44 16 9 O -0.58 -18.15 15.43 -3.03 -0.05 -18.20 16 10 N -0.61 -17.31 3.00 -816.99 -2.45 -19.76 16 11 C 0.12 3.23 6.53 86.50 0.57 3.79 16 12 C 0.05 1.77 5.47 86.54 0.47 2.25 16 13 N -0.54 -22.71 4.62 -898.81 -4.15 -26.87 16 14 C 0.21 10.95 4.72 85.56 0.40 11.36 16 15 C -0.52 -28.78 8.41 25.60 0.22 -28.56 16 16 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 18 N -0.94 -56.20 13.29 21.44 0.28 -55.91 16 19 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.04 1.53 5.62 86.40 0.49 2.02 16 24 C 0.13 3.80 6.60 86.36 0.57 4.37 16 25 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.42 2.79 8.47 -92.71 -0.79 2.01 16 31 H 0.11 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.11 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.10 2.14 7.63 -2.39 -0.02 2.12 16 34 H 0.11 2.10 7.94 -2.39 -0.02 2.09 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 2.43 6.02 -2.39 -0.01 2.42 16 37 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 3.32 6.67 -2.39 -0.02 3.30 16 39 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 40 H 0.01 0.33 7.97 -2.39 -0.02 0.31 16 41 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 2.90 7.99 -2.39 -0.02 2.88 16 44 H 0.09 2.72 7.06 -2.39 -0.02 2.70 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -73.00 364.64 -0.71 -73.71 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.19 Total: 10.93 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 6.06 Total: 18.04 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -8.89 Total: -114.26 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.10 Total: -34.12 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -73.00 -0.71 -73.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.500 kcal (2) G-P(sol) polarization free energy of solvation -72.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds