Wall clock time and date at job start Tue Mar 31 2020 03:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21288 * 120.00155 * 2 1 4 4 N 1.34781 * 120.00545 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00180 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47030 * 185.75354 * 5 4 2 7 7 H 1.09003 * 109.58191 * 52.60053 * 6 5 4 8 8 C 1.53186 * 109.58829 * 173.02996 * 6 5 4 9 9 C 1.53034 * 109.31501 * 174.42343 * 8 6 5 10 10 C 1.53049 * 109.53735 * 298.63558 * 9 8 6 11 11 C 1.52758 * 109.38141 * 61.24098 * 10 9 8 12 12 N 1.46921 * 109.58631 * 292.32226 * 6 5 4 13 13 C 1.34775 * 120.63499 * 6.57656 * 12 6 5 14 14 O 1.21594 * 119.99581 * 353.98647 * 13 12 6 15 15 N 1.34781 * 120.00712 * 173.98516 * 13 12 6 16 16 C 1.46495 * 120.00404 * 185.21379 * 15 13 12 17 17 C 1.52993 * 109.47198 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47046 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00159 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99818 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99878 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00121 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47323 * 90.00248 * 22 20 18 24 24 H 1.48503 * 109.47005 * 210.00065 * 22 20 18 25 25 H 1.48505 * 109.46986 * 329.99897 * 22 20 18 26 26 H 1.09003 * 109.46711 * 269.99861 * 1 2 3 27 27 H 1.08990 * 109.47200 * 30.00044 * 1 2 3 28 28 H 1.09000 * 109.46584 * 149.99855 * 1 2 3 29 29 H 0.97001 * 119.99253 * 359.97438 * 4 2 1 30 30 H 1.09002 * 109.47309 * 65.75518 * 5 4 2 31 31 H 1.09002 * 109.47084 * 305.75371 * 5 4 2 32 32 H 1.09006 * 109.49443 * 294.37497 * 8 6 5 33 33 H 1.09003 * 109.50055 * 54.43982 * 8 6 5 34 34 H 1.09001 * 109.46550 * 58.65289 * 9 8 6 35 35 H 1.08997 * 109.46188 * 178.61515 * 9 8 6 36 36 H 1.09002 * 109.49074 * 181.31480 * 10 9 8 37 37 H 1.08996 * 109.49539 * 301.37602 * 10 9 8 38 38 H 1.09002 * 109.50314 * 185.70965 * 11 10 9 39 39 H 1.08998 * 109.43548 * 65.42262 * 11 10 9 40 40 H 0.96997 * 119.99365 * 5.21371 * 15 13 12 41 41 H 1.09000 * 109.47270 * 300.00354 * 16 15 13 42 42 H 1.09003 * 109.46803 * 59.99725 * 16 15 13 43 43 H 1.09005 * 109.47285 * 299.99666 * 17 16 15 44 44 H 1.08995 * 109.47488 * 59.99820 * 17 16 15 45 45 H 0.96999 * 119.99879 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1560 -2.6023 -0.1462 7 1 3.6894 -3.0699 -1.0133 8 6 5.6777 -2.5913 -0.3217 9 6 6.1971 -4.0308 -0.3267 10 6 5.8701 -4.6975 1.0116 11 6 4.3551 -4.7304 1.2047 12 7 3.8250 -3.3673 1.0636 13 6 3.0545 -2.8271 2.0284 14 8 2.7167 -1.6613 1.9551 15 7 2.6583 -3.5788 3.0746 16 6 1.7288 -3.0267 4.0631 17 6 1.4436 -4.0777 5.1377 18 6 0.4869 -3.5099 6.1543 19 1 0.1194 -2.5002 6.0451 20 6 0.0816 -4.2791 7.2244 21 7 -0.7538 -3.7838 8.1113 22 14 0.7177 -6.0252 7.4138 23 1 1.9677 -6.0125 8.2154 24 1 -0.3044 -6.8523 8.1039 25 1 0.9956 -6.5990 6.0725 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3632 -0.8900 -0.5139 29 1 1.6960 -2.0072 -0.0005 30 1 4.0097 -0.7453 0.9359 31 1 4.0090 -0.5664 -0.8351 32 1 5.9315 -2.1097 -1.2661 33 1 6.1350 -2.0419 0.5012 34 1 5.7210 -4.5859 -1.1349 35 1 7.2768 -4.0268 -0.4761 36 1 6.2608 -5.7151 1.0160 37 1 6.3260 -4.1291 1.8222 38 1 4.1232 -5.1116 2.1992 39 1 3.9072 -5.3765 0.4497 40 1 2.9887 -4.4855 3.1729 41 1 2.1718 -2.1447 4.5255 42 1 0.7969 -2.7493 3.5703 43 1 1.0003 -4.9595 4.6750 44 1 2.3752 -4.3556 5.6306 45 1 -1.0386 -4.3248 8.8643 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602291847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:50 Heat of formation + Delta-G solvation = -66.447013 kcal Electronic energy + Delta-G solvation = -25343.459667 eV Core-core repulsion = 21781.947568 eV Total energy + Delta-G solvation = -3561.512098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95388 -40.13722 -38.63952 -36.93263 -35.62735 -34.64706 -33.79334 -32.80148 -31.53579 -30.56437 -27.59067 -26.56006 -25.24321 -23.43546 -22.42678 -22.05758 -21.48842 -20.59376 -18.97602 -18.84882 -17.52021 -17.24208 -17.05459 -16.72553 -16.43977 -16.21444 -15.63647 -15.45361 -15.34770 -15.05135 -14.68743 -14.59465 -14.48714 -14.12595 -13.82709 -13.65748 -13.42188 -13.30374 -13.04276 -13.00773 -12.90092 -12.16891 -12.15536 -12.09933 -11.90332 -11.75662 -11.60663 -11.53506 -11.45074 -10.90094 -10.78566 -10.38030 -10.33615 -9.49547 -9.32988 -8.29372 -6.36695 1.39023 1.41659 1.52814 1.64707 1.79916 2.23335 2.37144 2.53299 2.98836 3.05855 3.64940 3.86366 3.95375 4.04550 4.15106 4.21049 4.29138 4.36427 4.45037 4.46838 4.51631 4.61011 4.67649 4.69931 4.76814 4.85857 4.96009 5.01222 5.05040 5.09104 5.17030 5.22871 5.25822 5.42546 5.48195 5.49456 5.60555 5.70842 5.71465 5.97619 6.23683 6.69684 6.70774 7.05666 7.27991 7.42487 7.67895 8.87576 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.004462 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.190654 B = 6274.066507 C = 8074.217047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.501 3.499 3 O -0.619 6.619 4 N -0.676 5.676 5 C 0.136 3.864 6 C 0.159 3.841 7 H 0.102 0.898 8 C -0.126 4.126 9 C -0.111 4.111 10 C -0.134 4.134 11 C 0.106 3.894 12 N -0.625 5.625 13 C 0.686 3.314 14 O -0.602 6.602 15 N -0.735 5.735 16 C 0.170 3.830 17 C -0.010 4.010 18 C -0.537 4.537 19 H 0.027 0.973 20 C 0.004 3.996 21 N -0.952 5.952 22 Si 0.959 3.041 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.234 1.234 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.401 0.599 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.403 0.597 41 H 0.030 0.970 42 H 0.044 0.956 43 H 0.038 0.962 44 H 0.030 0.970 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.369 -8.415 -22.604 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.289 3.711 3 O -0.503 6.503 4 N -0.324 5.324 5 C 0.012 3.988 6 C 0.056 3.944 7 H 0.120 0.880 8 C -0.165 4.165 9 C -0.149 4.149 10 C -0.172 4.172 11 C -0.016 4.016 12 N -0.364 5.364 13 C 0.388 3.612 14 O -0.482 6.482 15 N -0.393 5.393 16 C 0.046 3.954 17 C -0.048 4.048 18 C -0.576 4.576 19 H 0.045 0.955 20 C -0.193 4.193 21 N -0.592 5.592 22 Si 0.781 3.219 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.157 1.157 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.236 0.764 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.241 0.759 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.441 -6.905 -22.507 27.110 hybrid contribution -0.272 -0.725 1.209 1.435 sum 13.169 -7.630 -21.299 26.178 Atomic orbital electron populations 1.21812 0.89780 1.05835 1.04780 1.21202 0.91782 0.83227 0.74842 1.90619 1.72193 1.33375 1.54094 1.45744 1.07133 1.08025 1.71507 1.21332 0.80740 0.96416 1.00333 1.21432 0.96800 0.89650 0.86546 0.88042 1.21918 0.92540 0.99027 1.03029 1.21474 1.01862 0.94052 0.97466 1.21859 0.94604 1.02606 0.98156 1.21812 0.95015 0.81707 1.03059 1.47366 1.52911 1.16911 1.19243 1.16262 0.79692 0.84730 0.80527 1.91103 1.62870 1.15977 1.78233 1.45419 1.50278 1.17894 1.25726 1.20756 0.90633 0.96051 0.88003 1.19620 0.96258 0.95536 0.93388 1.21239 1.27339 1.00297 1.08707 0.95505 1.26081 0.94615 1.03842 0.94727 1.70083 1.35160 1.39657 1.14264 0.85542 0.78133 0.78087 0.80106 1.19281 1.21267 1.15690 0.89692 0.88687 0.87743 0.76377 0.93439 0.92064 0.88821 0.93045 0.89911 0.90429 0.88387 0.93168 0.90267 0.88865 0.75894 0.95102 0.93761 0.94339 0.95213 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.30 71.24 0.73 -3.13 16 2 C 0.50 16.27 7.62 87.66 0.67 16.94 16 3 O -0.62 -25.97 17.09 -3.05 -0.05 -26.02 16 4 N -0.68 -18.54 3.15 -463.04 -1.46 -20.00 16 5 C 0.14 3.55 4.29 86.38 0.37 3.92 16 6 C 0.16 2.73 2.95 44.97 0.13 2.86 16 7 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 8 C -0.13 -1.66 5.37 30.67 0.16 -1.49 16 9 C -0.11 -0.96 5.89 30.62 0.18 -0.78 16 10 C -0.13 -1.37 6.07 30.53 0.19 -1.18 16 11 C 0.11 1.34 6.35 86.22 0.55 1.89 16 12 N -0.63 -12.32 2.98 -813.72 -2.42 -14.74 16 13 C 0.69 20.13 7.59 179.05 1.36 21.49 16 14 O -0.60 -22.34 10.04 -4.01 -0.04 -22.39 16 15 N -0.74 -22.02 5.46 -478.54 -2.61 -24.63 16 16 C 0.17 6.79 5.62 86.38 0.49 7.28 16 17 C -0.01 -0.44 4.16 29.85 0.12 -0.32 16 18 C -0.54 -30.42 9.66 25.60 0.25 -30.17 16 19 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 20 C 0.00 0.25 5.47 84.65 0.46 0.71 16 21 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 22 Si 0.96 41.64 27.47 68.60 1.88 43.52 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.40 9.47 7.68 -92.71 -0.71 8.76 16 30 H 0.05 1.68 6.44 -2.39 -0.02 1.66 16 31 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 32 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 1.03 5.67 -2.39 -0.01 1.02 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.40 9.65 5.98 -92.71 -0.55 9.09 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.56 7.20 -2.38 -0.02 1.54 16 44 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -79.95 353.03 0.93 -79.03 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.33 Total: 26.07 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 5.66 Total: 18.01 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -6.20 Total: -118.22 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.09 Total: -48.41 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.52 kcal Total: -79.95 0.93 -79.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602291847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.582 kcal (2) G-P(sol) polarization free energy of solvation -79.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds