Wall clock time and date at job start Tue Mar 31 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99925 * 2 1 4 4 N 1.34781 * 119.99776 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99751 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46878 * 174.60553 * 5 4 2 7 7 H 1.08996 * 109.58739 * 308.49887 * 6 5 4 8 8 C 1.53195 * 109.70091 * 188.14183 * 6 5 4 9 9 C 1.53037 * 109.31223 * 185.50646 * 8 6 5 10 10 C 1.53041 * 109.53531 * 61.36497 * 9 8 6 11 11 C 1.53618 * 109.24792 * 298.51293 * 10 9 8 12 12 N 1.46922 * 109.58383 * 68.78464 * 6 5 4 13 13 C 1.34776 * 120.63568 * 353.51164 * 12 6 5 14 14 O 1.21581 * 119.99735 * 6.05672 * 13 12 6 15 15 N 1.34778 * 120.00186 * 186.05475 * 13 12 6 16 16 C 1.46498 * 119.99793 * 174.97918 * 15 13 12 17 17 C 1.53002 * 109.46869 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47070 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99644 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00027 * 179.72182 * 20 18 17 22 22 Si 1.86799 * 119.99855 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47087 * 89.99918 * 22 20 18 24 24 H 1.48496 * 109.46895 * 210.00039 * 22 20 18 25 25 H 1.48501 * 109.47314 * 330.00095 * 22 20 18 26 26 H 1.08997 * 109.47226 * 240.00194 * 1 2 3 27 27 H 1.08998 * 109.47165 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46990 * 120.00065 * 1 2 3 29 29 H 0.96992 * 119.99966 * 0.02562 * 4 2 1 30 30 H 1.09002 * 109.47004 * 54.60425 * 5 4 2 31 31 H 1.09004 * 109.46840 * 294.60455 * 5 4 2 32 32 H 1.08993 * 109.49815 * 305.46536 * 8 6 5 33 33 H 1.09002 * 109.49531 * 65.55653 * 8 6 5 34 34 H 1.08997 * 109.46294 * 181.38493 * 9 8 6 35 35 H 1.08999 * 109.46104 * 301.36538 * 9 8 6 36 36 H 1.08999 * 109.49731 * 58.59136 * 10 9 8 37 37 H 1.09004 * 109.49772 * 178.68341 * 10 9 8 38 38 H 1.09000 * 109.73770 * 295.12095 * 11 10 9 39 39 H 1.08996 * 109.66987 * 174.54863 * 11 10 9 40 40 H 0.97002 * 119.99722 * 354.98420 * 15 13 12 41 41 H 1.08998 * 109.47078 * 60.00544 * 16 15 13 42 42 H 1.08993 * 109.47635 * 300.00328 * 16 15 13 43 43 H 1.09001 * 109.47312 * 60.00512 * 17 16 15 44 44 H 1.09001 * 109.47168 * 300.00231 * 17 16 15 45 45 H 0.97000 * 120.00332 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1558 -2.6034 0.1372 7 1 3.6746 -3.0827 0.9897 8 6 5.6740 -2.5951 0.3422 9 6 6.1929 -4.0348 0.3397 10 6 5.8915 -4.6851 -1.0125 11 6 4.3713 -4.7191 -1.2305 12 7 3.8482 -3.3534 -1.0881 13 6 3.0957 -2.8014 -2.0605 14 8 2.7567 -1.6367 -1.9795 15 7 2.7192 -3.5406 -3.1228 16 6 1.8116 -2.9750 -4.1240 17 6 1.5457 -4.0134 -5.2158 18 6 0.6126 -3.4313 -6.2461 19 1 0.2455 -2.4219 -6.1332 20 6 0.2266 -4.1879 -7.3323 21 7 -0.5921 -3.6818 -8.2285 22 14 0.8610 -5.9340 -7.5271 23 1 -0.0688 -6.8764 -6.8545 24 1 0.9485 -6.2706 -8.9708 25 1 2.2077 -6.0430 -6.9109 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6959 -2.0072 0.0005 30 1 4.0089 -0.5718 0.8388 31 1 4.0096 -0.7396 -0.9333 32 1 6.1471 -2.0364 -0.4653 33 1 5.9096 -2.1251 1.2971 34 1 7.2694 -4.0332 0.5100 35 1 5.7008 -4.5995 1.1316 36 1 6.3627 -4.1068 -1.8073 37 1 6.2820 -5.7027 -1.0219 38 1 3.9072 -5.3674 -0.4873 39 1 4.1524 -5.0917 -2.2312 40 1 3.0491 -4.4471 -3.2242 41 1 2.2664 -2.0893 -4.5675 42 1 0.8706 -2.7003 -3.6475 43 1 1.0907 -4.8989 -4.7720 44 1 2.4866 -4.2885 -5.6924 45 1 -0.8639 -4.2142 -8.9925 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602291848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:52 Heat of formation + Delta-G solvation = -42.843022 kcal Electronic energy + Delta-G solvation = -25327.615104 eV Core-core repulsion = 21767.126552 eV Total energy + Delta-G solvation = -3560.488552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88178 -38.89566 -37.64352 -35.58753 -34.17356 -33.19284 -32.51183 -31.79327 -29.88799 -29.57991 -26.55970 -24.93831 -24.39720 -22.35318 -21.24051 -20.75995 -20.29216 -19.54624 -17.82039 -16.92852 -16.38320 -16.16600 -15.98580 -15.48538 -15.21524 -14.71151 -14.50338 -14.40196 -14.14037 -13.83984 -13.57484 -13.46492 -13.09851 -12.81619 -12.72341 -12.62079 -12.49967 -12.22433 -11.81106 -11.51134 -11.46738 -11.33627 -11.19346 -10.98273 -10.90368 -10.42867 -10.17900 -9.97870 -9.60577 -9.38706 -9.10818 -9.08581 -8.64525 -8.38513 -8.18665 -6.13020 -4.13182 2.69536 3.02326 3.22217 3.29948 3.31275 3.41018 3.59177 4.05168 4.35186 4.46525 4.50062 4.58047 4.77734 4.92113 4.95230 5.12022 5.15226 5.19786 5.28679 5.42395 5.43358 5.51925 5.55414 5.58479 5.68971 5.74492 5.75379 5.97094 6.01391 6.02692 6.20178 6.22781 6.49856 6.54905 6.76866 6.81942 6.97621 7.20433 7.22001 7.65224 7.83070 8.17963 8.42842 8.60518 8.85971 8.91977 9.46997 11.00080 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.004451 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.492670 B = 6288.902216 C = 8086.321074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.516 3.484 3 O -0.565 6.565 4 N -0.691 5.691 5 C 0.133 3.867 6 C 0.155 3.845 7 H 0.072 0.928 8 C -0.129 4.129 9 C -0.116 4.116 10 C -0.136 4.136 11 C 0.113 3.887 12 N -0.635 5.635 13 C 0.690 3.310 14 O -0.566 6.566 15 N -0.743 5.743 16 C 0.150 3.850 17 C -0.021 4.021 18 C -0.522 4.522 19 H 0.076 0.924 20 C 0.070 3.930 21 N -0.898 5.898 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.392 0.608 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.388 0.612 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.016 0.984 44 H 0.020 0.980 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.364 -4.822 20.600 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.303 3.697 3 O -0.444 6.444 4 N -0.341 5.341 5 C 0.010 3.990 6 C 0.050 3.950 7 H 0.090 0.910 8 C -0.168 4.168 9 C -0.154 4.154 10 C -0.175 4.175 11 C -0.011 4.011 12 N -0.375 5.375 13 C 0.392 3.608 14 O -0.443 6.443 15 N -0.399 5.399 16 C 0.027 3.973 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.094 0.906 20 C -0.132 4.132 21 N -0.536 5.536 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.192 1.192 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.226 0.774 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.224 0.776 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.403 -3.232 20.446 23.633 hybrid contribution 0.182 -2.040 -0.482 2.104 sum 11.585 -5.272 19.965 23.677 Atomic orbital electron populations 1.21871 0.92584 1.04930 1.03844 1.20475 0.90175 0.83484 0.75576 1.90655 1.70954 1.31611 1.51217 1.45701 1.06698 1.08156 1.73505 1.21410 0.81070 0.93967 1.02576 1.21289 0.95457 0.92198 0.86037 0.90980 1.21909 0.94460 0.97568 1.02859 1.21475 1.01071 0.95579 0.97259 1.22006 0.95783 1.01451 0.98226 1.21690 0.93968 0.83348 1.02090 1.47346 1.55566 1.15730 1.18906 1.16117 0.79263 0.85243 0.80169 1.91075 1.60869 1.14329 1.78004 1.45815 1.51980 1.17426 1.24702 1.21333 0.91034 0.97456 0.87454 1.19783 0.97409 0.94711 0.93955 1.20906 1.27436 1.02112 1.05585 0.90629 1.24996 0.94519 0.98224 0.95492 1.69901 1.33894 1.37442 1.12380 0.86755 0.79799 0.85142 0.77376 1.20251 1.21265 1.19179 0.90254 0.89491 0.89342 0.77413 0.92466 0.88932 0.90948 0.90537 0.91530 0.91759 0.91261 0.90766 0.91437 0.90174 0.77645 0.92195 0.92396 0.96614 0.96175 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.32 36.01 0.37 -1.68 16 2 C 0.52 8.14 7.64 -10.98 -0.08 8.06 16 3 O -0.56 -11.29 17.08 5.56 0.09 -11.20 16 4 N -0.69 -9.45 3.19 -60.29 -0.19 -9.64 16 5 C 0.13 1.74 4.29 -4.04 -0.02 1.72 16 6 C 0.15 1.49 2.92 -67.60 -0.20 1.30 16 7 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 8 C -0.13 -1.00 5.37 -26.61 -0.14 -1.15 16 9 C -0.12 -0.74 5.88 -26.69 -0.16 -0.89 16 10 C -0.14 -0.95 6.10 -26.39 -0.16 -1.11 16 11 C 0.11 0.93 6.41 -3.49 -0.02 0.91 16 12 N -0.64 -6.97 2.97 -170.65 -0.51 -7.47 16 13 C 0.69 10.40 7.64 -86.92 -0.66 9.73 16 14 O -0.57 -10.26 10.11 5.29 0.05 -10.21 16 15 N -0.74 -11.62 5.46 -65.23 -0.36 -11.98 16 16 C 0.15 2.97 5.62 -4.04 -0.02 2.94 16 17 C -0.02 -0.46 4.16 -27.88 -0.12 -0.58 16 18 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 22 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.39 4.79 7.81 -40.82 -0.32 4.47 16 30 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 31 H 0.09 1.55 6.34 -51.93 -0.33 1.22 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.68 5.66 -51.93 -0.29 0.38 16 40 H 0.39 5.20 5.97 -40.82 -0.24 4.96 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 44 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -34.30 353.26 -8.58 -42.88 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.45 Total: 6.22 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.64 Total: 6.35 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.28 Total: -55.44 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.15 Total: -21.40 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.30 -8.58 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602291848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.038 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds