Wall clock time and date at job start Tue Mar 31 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99925 * 2 1 4 4 N 1.34781 * 119.99776 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99751 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46878 * 174.60553 * 5 4 2 7 7 H 1.08996 * 109.58739 * 308.49887 * 6 5 4 8 8 C 1.53195 * 109.70091 * 188.14183 * 6 5 4 9 9 C 1.53037 * 109.31223 * 185.50646 * 8 6 5 10 10 C 1.53041 * 109.53531 * 61.36497 * 9 8 6 11 11 C 1.53618 * 109.24792 * 298.51293 * 10 9 8 12 12 N 1.46922 * 109.58383 * 68.78464 * 6 5 4 13 13 C 1.34776 * 120.63568 * 353.51164 * 12 6 5 14 14 O 1.21581 * 119.99735 * 6.05672 * 13 12 6 15 15 N 1.34778 * 120.00186 * 186.05475 * 13 12 6 16 16 C 1.46498 * 119.99793 * 174.97918 * 15 13 12 17 17 C 1.53002 * 109.46869 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47070 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99644 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00027 * 179.72182 * 20 18 17 22 22 Si 1.86799 * 119.99855 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47087 * 89.99918 * 22 20 18 24 24 H 1.48496 * 109.46895 * 210.00039 * 22 20 18 25 25 H 1.48501 * 109.47314 * 330.00095 * 22 20 18 26 26 H 1.08997 * 109.47226 * 240.00194 * 1 2 3 27 27 H 1.08998 * 109.47165 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46990 * 120.00065 * 1 2 3 29 29 H 0.96992 * 119.99966 * 0.02562 * 4 2 1 30 30 H 1.09002 * 109.47004 * 54.60425 * 5 4 2 31 31 H 1.09004 * 109.46840 * 294.60455 * 5 4 2 32 32 H 1.08993 * 109.49815 * 305.46536 * 8 6 5 33 33 H 1.09002 * 109.49531 * 65.55653 * 8 6 5 34 34 H 1.08997 * 109.46294 * 181.38493 * 9 8 6 35 35 H 1.08999 * 109.46104 * 301.36538 * 9 8 6 36 36 H 1.08999 * 109.49731 * 58.59136 * 10 9 8 37 37 H 1.09004 * 109.49772 * 178.68341 * 10 9 8 38 38 H 1.09000 * 109.73770 * 295.12095 * 11 10 9 39 39 H 1.08996 * 109.66987 * 174.54863 * 11 10 9 40 40 H 0.97002 * 119.99722 * 354.98420 * 15 13 12 41 41 H 1.08998 * 109.47078 * 60.00544 * 16 15 13 42 42 H 1.08993 * 109.47635 * 300.00328 * 16 15 13 43 43 H 1.09001 * 109.47312 * 60.00512 * 17 16 15 44 44 H 1.09001 * 109.47168 * 300.00231 * 17 16 15 45 45 H 0.97000 * 120.00332 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1558 -2.6034 0.1372 7 1 3.6746 -3.0827 0.9897 8 6 5.6740 -2.5951 0.3422 9 6 6.1929 -4.0348 0.3397 10 6 5.8915 -4.6851 -1.0125 11 6 4.3713 -4.7191 -1.2305 12 7 3.8482 -3.3534 -1.0881 13 6 3.0957 -2.8014 -2.0605 14 8 2.7567 -1.6367 -1.9795 15 7 2.7192 -3.5406 -3.1228 16 6 1.8116 -2.9750 -4.1240 17 6 1.5457 -4.0134 -5.2158 18 6 0.6126 -3.4313 -6.2461 19 1 0.2455 -2.4219 -6.1332 20 6 0.2266 -4.1879 -7.3323 21 7 -0.5921 -3.6818 -8.2285 22 14 0.8610 -5.9340 -7.5271 23 1 -0.0688 -6.8764 -6.8545 24 1 0.9485 -6.2706 -8.9708 25 1 2.2077 -6.0430 -6.9109 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6959 -2.0072 0.0005 30 1 4.0089 -0.5718 0.8388 31 1 4.0096 -0.7396 -0.9333 32 1 6.1471 -2.0364 -0.4653 33 1 5.9096 -2.1251 1.2971 34 1 7.2694 -4.0332 0.5100 35 1 5.7008 -4.5995 1.1316 36 1 6.3627 -4.1068 -1.8073 37 1 6.2820 -5.7027 -1.0219 38 1 3.9072 -5.3674 -0.4873 39 1 4.1524 -5.0917 -2.2312 40 1 3.0491 -4.4471 -3.2242 41 1 2.2664 -2.0893 -4.5675 42 1 0.8706 -2.7003 -3.6475 43 1 1.0907 -4.8989 -4.7720 44 1 2.4866 -4.2885 -5.6924 45 1 -0.8639 -4.2142 -8.9925 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602291848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:52 Heat of formation + Delta-G solvation = -67.767403 kcal Electronic energy + Delta-G solvation = -25328.695906 eV Core-core repulsion = 21767.126552 eV Total energy + Delta-G solvation = -3561.569355 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93663 -40.14405 -38.62277 -36.91743 -35.62950 -34.65719 -33.79533 -32.77046 -31.53283 -30.55308 -27.57725 -26.55415 -25.25182 -23.43739 -22.42793 -22.05268 -21.49097 -20.59038 -18.97667 -18.84792 -17.53087 -17.23399 -17.06207 -16.70549 -16.44524 -16.20848 -15.63499 -15.45126 -15.33716 -15.05762 -14.65745 -14.58583 -14.50574 -14.11034 -13.83407 -13.64795 -13.44208 -13.30779 -13.04040 -13.00610 -12.89249 -12.17551 -12.16425 -12.10011 -11.88624 -11.76654 -11.60998 -11.53701 -11.45689 -10.89434 -10.78415 -10.36439 -10.33314 -9.50904 -9.34812 -8.29448 -6.36793 1.38675 1.41948 1.52920 1.64946 1.80144 2.23268 2.37138 2.52964 2.98819 3.05726 3.65222 3.86724 3.95374 4.03424 4.14348 4.21320 4.28720 4.36204 4.45292 4.46876 4.52745 4.61357 4.67707 4.69411 4.76529 4.86314 4.95952 5.01846 5.05271 5.10036 5.17003 5.23010 5.25816 5.42211 5.48095 5.49643 5.61239 5.70866 5.71334 5.97548 6.23614 6.69657 6.70662 7.05765 7.27883 7.42518 7.68124 8.87526 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.004451 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.492670 B = 6288.902216 C = 8086.321074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.502 3.498 3 O -0.618 6.618 4 N -0.679 5.679 5 C 0.135 3.865 6 C 0.160 3.840 7 H 0.102 0.898 8 C -0.126 4.126 9 C -0.111 4.111 10 C -0.133 4.133 11 C 0.106 3.894 12 N -0.626 5.626 13 C 0.687 3.313 14 O -0.603 6.603 15 N -0.735 5.735 16 C 0.170 3.830 17 C -0.010 4.010 18 C -0.538 4.538 19 H 0.026 0.974 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.960 3.040 23 H -0.262 1.262 24 H -0.288 1.288 25 H -0.238 1.238 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.401 0.599 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.403 0.597 41 H 0.030 0.970 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.031 0.969 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.920 -8.722 22.892 27.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.290 3.710 3 O -0.502 6.502 4 N -0.327 5.327 5 C 0.011 3.989 6 C 0.056 3.944 7 H 0.119 0.881 8 C -0.165 4.165 9 C -0.149 4.149 10 C -0.172 4.172 11 C -0.016 4.016 12 N -0.364 5.364 13 C 0.389 3.611 14 O -0.483 6.483 15 N -0.393 5.393 16 C 0.046 3.954 17 C -0.048 4.048 18 C -0.576 4.576 19 H 0.045 0.955 20 C -0.193 4.193 21 N -0.592 5.592 22 Si 0.782 3.218 23 H -0.187 1.187 24 H -0.214 1.214 25 H -0.161 1.161 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.236 0.764 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.241 0.759 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.001 -7.203 22.793 27.211 hybrid contribution -0.294 -0.729 -1.178 1.416 sum 12.707 -7.932 21.615 26.298 Atomic orbital electron populations 1.21848 0.89718 1.05408 1.05394 1.21213 0.91805 0.83209 0.74765 1.90620 1.72269 1.33392 1.53876 1.45679 1.07116 1.08035 1.71878 1.21348 0.80745 0.96423 1.00403 1.21425 0.96987 0.89898 0.86084 0.88077 1.21917 0.92599 0.99007 1.02974 1.21474 1.01920 0.94120 0.97342 1.22000 0.94551 1.02571 0.98037 1.22000 0.95007 0.81618 1.03008 1.47370 1.54155 1.16921 1.17999 1.16257 0.79604 0.84690 0.80565 1.91085 1.62332 1.16027 1.78817 1.45425 1.51623 1.18101 1.24189 1.20755 0.91053 0.95943 0.87693 1.19620 0.96500 0.95454 0.93211 1.21239 1.28428 1.00467 1.07484 0.95521 1.26082 0.94559 1.03837 0.94783 1.70080 1.35858 1.39835 1.13382 0.85531 0.80626 0.78182 0.77483 1.18697 1.21438 1.16108 0.86645 0.89673 0.89548 0.76376 0.92156 0.93239 0.93056 0.88830 0.90435 0.89906 0.93142 0.88477 0.88780 0.90262 0.75888 0.95107 0.93794 0.94491 0.95068 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.32 71.24 0.74 -3.13 16 2 C 0.50 16.23 7.64 87.66 0.67 16.90 16 3 O -0.62 -25.94 17.08 -3.03 -0.05 -25.99 16 4 N -0.68 -18.51 3.19 -463.03 -1.48 -19.99 16 5 C 0.13 3.53 4.29 86.38 0.37 3.90 16 6 C 0.16 2.74 2.92 44.98 0.13 2.87 16 7 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 8 C -0.13 -1.66 5.37 30.67 0.16 -1.50 16 9 C -0.11 -0.96 5.88 30.62 0.18 -0.78 16 10 C -0.13 -1.37 6.10 30.82 0.19 -1.18 16 11 C 0.11 1.34 6.41 86.50 0.55 1.90 16 12 N -0.63 -12.36 2.97 -812.07 -2.41 -14.77 16 13 C 0.69 20.24 7.64 179.05 1.37 21.61 16 14 O -0.60 -22.49 10.11 -3.97 -0.04 -22.53 16 15 N -0.74 -22.12 5.46 -478.55 -2.61 -24.74 16 16 C 0.17 6.82 5.62 86.38 0.49 7.30 16 17 C -0.01 -0.44 4.16 29.85 0.12 -0.31 16 18 C -0.54 -30.50 9.66 25.60 0.25 -30.25 16 19 H 0.03 1.71 7.99 -2.91 -0.02 1.68 16 20 C 0.00 0.25 5.47 84.66 0.46 0.71 16 21 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 22 Si 0.96 41.68 27.47 68.60 1.88 43.56 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 26 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.40 9.34 7.81 -92.71 -0.72 8.62 16 30 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 31 H 0.05 1.76 6.34 -2.38 -0.02 1.74 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 1.04 5.66 -2.39 -0.01 1.02 16 40 H 0.40 9.69 5.97 -92.71 -0.55 9.13 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 44 H 0.03 1.30 7.20 -2.39 -0.02 1.29 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -80.26 353.26 0.93 -79.33 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.34 Total: 25.97 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 5.68 Total: 18.04 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -6.20 Total: -118.37 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.09 Total: -48.52 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.56 kcal Total: -80.26 0.93 -79.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602291848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.558 kcal (2) G-P(sol) polarization free energy of solvation -80.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds