Wall clock time and date at job start Tue Mar 31 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47244 * 2 1 4 4 C 1.45752 * 117.94956 * 269.98813 * 3 2 1 5 5 C 1.52923 * 110.48926 * 160.92396 * 4 3 2 6 6 C 1.53342 * 108.66413 * 50.76786 * 5 4 3 7 7 C 1.53078 * 108.43503 * 292.46746 * 6 5 4 8 8 H 1.08997 * 109.33225 * 288.80145 * 7 6 5 9 9 N 1.46499 * 109.40251 * 169.01279 * 7 6 5 10 10 C 1.34774 * 119.99755 * 154.57269 * 9 7 6 11 11 O 1.21273 * 120.00176 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99685 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.47343 * 319.99900 * 12 10 9 14 14 N 1.46905 * 109.47075 * 200.00059 * 12 10 9 15 15 C 1.53001 * 109.47072 * 80.00235 * 12 10 9 16 16 C 1.53004 * 109.47067 * 184.99770 * 15 12 10 17 17 C 1.50697 * 109.47101 * 179.97438 * 16 15 12 18 18 H 1.08000 * 120.00038 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00294 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00588 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99591 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46856 * 90.00692 * 21 19 17 23 23 H 1.48502 * 109.46786 * 210.00142 * 21 19 17 24 24 H 1.48500 * 109.47145 * 330.00347 * 21 19 17 25 25 C 1.33356 * 117.94629 * 90.00258 * 3 2 1 26 26 O 1.21280 * 118.24278 * 2.22340 * 25 3 2 27 27 H 1.09002 * 109.47469 * 59.99614 * 1 2 3 28 28 H 1.09008 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46801 * 299.99322 * 1 2 3 30 30 H 1.09007 * 109.46924 * 240.00513 * 2 1 3 31 31 H 1.08994 * 109.47235 * 120.00572 * 2 1 3 32 32 H 1.09007 * 109.29947 * 281.23072 * 4 3 2 33 33 H 1.08998 * 109.30538 * 40.81407 * 4 3 2 34 34 H 1.08994 * 109.60352 * 170.50387 * 5 4 3 35 35 H 1.09000 * 109.60212 * 290.82815 * 5 4 3 36 36 H 1.09001 * 109.68203 * 172.73136 * 6 5 4 37 37 H 1.09003 * 109.66148 * 52.19429 * 6 5 4 38 38 H 0.97001 * 119.99735 * 334.57416 * 9 7 6 39 39 H 1.00901 * 110.99869 * 176.04968 * 14 12 10 40 40 H 1.00896 * 110.99543 * 300.00090 * 14 12 10 41 41 H 1.08999 * 109.47045 * 304.99692 * 15 12 10 42 42 H 1.09002 * 109.47037 * 64.99916 * 15 12 10 43 43 H 1.08999 * 109.47124 * 299.99874 * 16 15 12 44 44 H 1.09002 * 109.47073 * 60.00168 * 16 15 12 45 45 H 0.97000 * 120.00027 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2463 2.0251 -1.2875 5 6 2.2872 3.5452 -1.1259 6 6 3.2670 3.8927 0.0013 7 6 2.6793 3.3948 1.3241 8 1 1.8287 4.0187 1.5986 9 7 3.7004 3.4760 2.3715 10 6 3.3333 3.5951 3.6628 11 8 2.1576 3.6346 3.9577 12 6 4.3837 3.6792 4.7401 13 1 5.1939 2.9866 4.5124 14 7 3.7866 3.3256 6.0349 15 6 4.9347 5.1051 4.8050 16 6 6.0863 5.1615 5.8108 17 6 6.6294 6.5658 5.8742 18 1 6.1962 7.3406 5.2591 19 6 7.6793 6.8615 6.7176 20 7 8.1529 8.0871 6.7734 21 14 8.4280 5.5214 7.7822 22 1 9.5334 4.8614 7.0423 23 1 8.9584 6.1214 9.0328 24 1 7.3874 4.5165 8.1177 25 6 2.2267 1.9703 1.1781 26 8 2.0411 1.3209 2.1854 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.1951 1.6810 -1.6995 33 1 1.4396 1.7600 -1.9709 34 1 2.6232 4.0030 -2.0563 35 1 1.2922 3.9133 -0.8758 36 1 3.4074 4.9728 0.0457 37 1 4.2244 3.4048 -0.1816 38 1 4.6408 3.4440 2.1355 39 1 4.4847 3.3118 6.7633 40 1 3.0323 3.9536 6.2687 41 1 5.2976 5.3995 3.8202 42 1 4.1439 5.7862 5.1195 43 1 5.7234 4.8671 6.7955 44 1 6.8771 4.4804 5.4963 45 1 8.8913 8.2951 7.3670 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722347093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:20 Heat of formation + Delta-G solvation = -81.613515 kcal Electronic energy + Delta-G solvation = -24739.091443 eV Core-core repulsion = 21176.921676 eV Total energy + Delta-G solvation = -3562.169767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00547 -39.27369 -36.70151 -36.00066 -35.26714 -33.21457 -32.77034 -30.35101 -30.27550 -29.27658 -26.77134 -24.97378 -24.09300 -22.99642 -22.11570 -20.52603 -19.89419 -18.98625 -17.38802 -17.16167 -16.81351 -16.58669 -16.50917 -15.12918 -14.82413 -14.70980 -14.29340 -14.21721 -14.16867 -14.02807 -13.97868 -13.65468 -13.15027 -12.82563 -12.75847 -12.66541 -12.31563 -12.17759 -11.92932 -11.75542 -11.63507 -11.39201 -11.34581 -11.17320 -10.95215 -10.32664 -10.12189 -10.05123 -9.86936 -9.33430 -9.29892 -8.95955 -8.90417 -8.60965 -8.22251 -6.10842 -4.10185 2.42486 2.64902 3.07998 3.26273 3.30842 3.34835 3.36944 4.26716 4.30764 4.31917 4.39015 4.45352 4.80438 4.87245 4.92673 4.97842 5.08497 5.11828 5.15386 5.17043 5.22557 5.38499 5.40965 5.45578 5.53317 5.57811 5.65404 5.71605 5.75209 5.92258 6.17665 6.22812 6.35517 6.40564 6.68585 7.11983 7.23907 7.24456 7.39268 7.65356 7.69103 7.86353 8.08103 8.45473 8.51131 8.93118 9.50735 11.02352 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026866 B = 0.003109 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.947280 B = 9003.444801 C = 9527.482259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.608 5.608 4 C 0.113 3.887 5 C -0.133 4.133 6 C -0.131 4.131 7 C 0.140 3.860 8 H 0.116 0.884 9 N -0.721 5.721 10 C 0.534 3.466 11 O -0.521 6.521 12 C 0.075 3.925 13 H 0.095 0.905 14 N -0.829 5.829 15 C -0.129 4.129 16 C -0.011 4.011 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.498 3.502 26 O -0.520 6.520 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.404 0.596 39 H 0.350 0.650 40 H 0.347 0.653 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.140 -13.327 -20.191 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.344 5.344 4 C -0.010 4.010 5 C -0.171 4.171 6 C -0.169 4.169 7 C 0.031 3.969 8 H 0.134 0.866 9 N -0.376 5.376 10 C 0.320 3.680 11 O -0.394 6.394 12 C -0.040 4.040 13 H 0.113 0.887 14 N -0.361 5.361 15 C -0.169 4.169 16 C -0.049 4.049 17 C -0.561 4.561 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 C 0.284 3.716 26 O -0.394 6.394 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.239 0.761 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.154 -14.203 -19.630 27.107 hybrid contribution 1.306 0.377 0.576 1.476 sum -10.848 -13.826 -19.054 25.921 Atomic orbital electron populations 1.22094 0.95864 1.02190 1.02273 1.21448 0.94536 0.82771 1.03207 1.47467 1.66563 1.14522 1.05817 1.21415 1.01629 0.93084 0.84908 1.21846 1.00733 0.94786 0.99711 1.21973 0.99469 1.03135 0.92372 1.20679 0.94385 0.92982 0.88839 0.86620 1.45749 1.09080 1.76899 1.05822 1.20738 0.90358 0.74091 0.82786 1.90641 1.19120 1.47818 1.81805 1.21471 0.94239 0.98530 0.89778 0.88680 1.58688 1.15030 1.59135 1.03227 1.22211 0.99793 0.93165 1.01733 1.19580 0.93058 0.98176 0.94053 1.21070 1.16557 0.93792 1.24663 0.91065 1.25042 0.96452 0.95362 0.96604 1.69911 1.26447 1.18949 1.38713 0.86762 0.79803 0.82392 0.80214 1.20280 1.21357 1.18925 1.20745 0.77870 0.90040 0.82953 1.90773 1.49695 1.63427 1.35460 0.92771 0.91648 0.92102 0.90783 0.89520 0.91596 0.90655 0.89050 0.90543 0.89377 0.90336 0.76146 0.83539 0.83893 0.91918 0.92035 0.96554 0.96790 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.23 37.16 0.38 -0.98 16 2 C 0.10 0.90 5.94 -4.04 -0.02 0.88 16 3 N -0.61 -5.76 2.81 -174.96 -0.49 -6.25 16 4 C 0.11 0.63 6.32 -4.48 -0.03 0.60 16 5 C -0.13 -0.68 6.02 -26.59 -0.16 -0.84 16 6 C -0.13 -0.93 5.51 -26.51 -0.15 -1.08 16 7 C 0.14 1.63 2.70 -69.30 -0.19 1.45 16 8 H 0.12 1.52 7.57 -51.93 -0.39 1.13 16 9 N -0.72 -9.62 4.96 -55.14 -0.27 -9.89 16 10 C 0.53 9.23 6.51 -10.98 -0.07 9.16 16 11 O -0.52 -10.77 15.48 4.59 0.07 -10.70 16 12 C 0.08 1.28 3.21 -68.86 -0.22 1.06 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 14 N -0.83 -14.57 8.94 -5.65 -0.05 -14.62 16 15 C -0.13 -2.46 4.78 -26.73 -0.13 -2.59 16 16 C -0.01 -0.25 3.81 -27.88 -0.11 -0.36 16 17 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 21 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 25 C 0.50 6.60 7.19 -11.87 -0.09 6.51 16 26 O -0.52 -9.41 14.97 4.59 0.07 -9.34 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.45 8.01 -51.93 -0.42 0.03 16 31 H 0.09 0.97 7.13 -51.93 -0.37 0.60 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.50 8.10 -51.93 -0.42 0.07 16 38 H 0.40 4.38 8.59 -40.82 -0.35 4.03 16 39 H 0.35 5.89 7.55 -39.29 -0.30 5.59 16 40 H 0.35 6.18 8.58 -39.29 -0.34 5.84 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.02 0.37 5.93 -51.93 -0.31 0.06 16 44 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -36.44 361.51 -7.85 -44.29 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.52 Total: 10.36 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.21 Total: 0.78 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.04 Total: -57.44 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.14 Total: -20.05 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.44 -7.85 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722347093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.319 kcal (2) G-P(sol) polarization free energy of solvation -36.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds