Wall clock time and date at job start Tue Mar 31 2020 03:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47539 * 2 1 4 4 C 1.47953 * 111.00259 * 70.64034 * 3 2 1 5 5 C 1.53931 * 86.18239 * 137.58277 * 4 3 2 6 6 C 1.47964 * 110.99827 * 170.00350 * 3 2 1 7 7 H 1.08996 * 113.86257 * 336.74193 * 6 3 2 8 8 C 1.53002 * 113.75948 * 108.10104 * 6 3 2 9 9 N 1.46497 * 109.46910 * 301.06133 * 8 6 3 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 8 6 11 11 O 1.21585 * 120.00358 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00052 * 179.97438 * 10 9 8 13 13 C 1.47025 * 125.64496 * 0.05114 * 12 10 9 14 14 C 1.54328 * 107.26573 * 181.01681 * 13 12 10 15 15 C 1.55151 * 102.94650 * 22.19223 * 14 13 12 16 16 O 1.42901 * 111.00500 * 82.60741 * 15 14 13 17 17 C 1.50704 * 111.00701 * 206.42300 * 15 14 13 18 18 H 1.08000 * 119.99249 * 354.75075 * 17 15 14 19 19 C 1.37875 * 120.00206 * 174.75269 * 17 15 14 20 20 N 1.31518 * 119.99566 * 4.92797 * 19 17 15 21 21 Si 1.86797 * 120.00014 * 184.92692 * 19 17 15 22 22 H 1.48492 * 109.47002 * 94.99937 * 21 19 17 23 23 H 1.48504 * 109.46976 * 215.00114 * 21 19 17 24 24 H 1.48502 * 109.47055 * 334.99790 * 21 19 17 25 25 C 1.47432 * 125.65000 * 179.97438 * 12 10 9 26 26 H 1.08994 * 109.47777 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46841 * 300.00375 * 1 2 3 28 28 H 1.09005 * 109.46869 * 59.99862 * 1 2 3 29 29 H 1.09004 * 109.46841 * 239.99625 * 2 1 3 30 30 H 1.08999 * 109.47378 * 120.00602 * 2 1 3 31 31 H 1.09010 * 113.75898 * 23.26779 * 4 3 2 32 32 H 1.09001 * 113.86358 * 251.91739 * 4 3 2 33 33 H 1.09001 * 113.73634 * 221.92200 * 5 4 3 34 34 H 1.09004 * 113.83160 * 90.65202 * 5 4 3 35 35 H 1.08999 * 109.46951 * 181.06166 * 8 6 3 36 36 H 1.08996 * 109.47390 * 61.06345 * 8 6 3 37 37 H 0.96993 * 120.00291 * 0.02562 * 9 8 6 38 38 H 1.08998 * 109.88412 * 61.60671 * 13 12 10 39 39 H 1.08997 * 109.88414 * 300.43021 * 13 12 10 40 40 H 1.09004 * 110.72073 * 263.82629 * 14 13 12 41 41 H 1.09003 * 110.71929 * 140.55659 * 14 13 12 42 42 H 0.96698 * 114.00175 * 180.02562 * 16 15 14 43 43 H 0.97001 * 119.99568 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.36349 * 37.07657 * 25 12 10 45 45 H 1.08998 * 110.36577 * 274.75325 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7648 2.0375 1.3031 5 6 3.1839 2.6195 1.1729 6 6 3.4790 1.4312 0.2398 7 1 3.8692 0.5540 0.7558 8 6 4.2955 1.8076 -0.9982 9 7 4.0398 0.8371 -2.0654 10 6 4.6553 0.9683 -3.2572 11 8 5.4231 1.8919 -3.4465 12 7 4.4205 0.0752 -4.2388 13 6 3.5202 -1.0835 -4.1457 14 6 3.5907 -1.8280 -5.4956 15 6 4.9548 -1.3689 -6.0750 16 8 6.0277 -2.1414 -5.5329 17 6 4.9521 -1.4353 -7.5806 18 1 4.1019 -1.8507 -8.1012 19 6 6.0350 -0.9658 -8.2933 20 7 7.1093 -0.5498 -7.6589 21 14 5.9761 -0.9207 -10.1598 22 1 5.5456 0.4276 -10.6090 23 1 7.3255 -1.2167 -10.7049 24 1 5.0107 -1.9373 -10.6493 25 6 5.0226 0.0991 -5.5844 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6518 1.3369 2.1305 32 1 0.9769 2.7902 1.2728 33 1 3.7533 2.5995 2.1021 34 1 3.2186 3.5881 0.6742 35 1 5.3566 1.8025 -0.7489 36 1 4.0064 2.8030 -1.3354 37 1 3.4276 0.1001 -1.9142 38 1 2.5002 -0.7465 -3.9611 39 1 3.8464 -1.7427 -3.3413 40 1 2.7723 -1.5226 -6.1477 41 1 3.5806 -2.9071 -5.3419 42 1 6.9003 -1.8904 -5.8654 43 1 7.8713 -0.2199 -8.1604 44 1 6.0586 0.4336 -5.5304 45 1 4.4477 0.7474 -6.2457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890059245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:54 Heat of formation + Delta-G solvation = -42.732845 kcal Electronic energy + Delta-G solvation = -25117.513470 eV Core-core repulsion = 21557.029695 eV Total energy + Delta-G solvation = -3560.483775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49818 -39.34962 -37.27510 -34.20223 -34.14963 -32.95550 -32.15371 -30.17657 -28.37894 -27.56147 -27.48731 -24.99225 -23.43522 -22.46566 -21.94083 -20.03545 -19.60387 -19.27532 -17.61101 -17.02771 -16.56105 -15.86682 -15.49771 -15.22875 -14.99086 -14.60552 -14.31782 -14.24068 -13.89000 -13.55635 -13.03057 -12.94360 -12.77111 -12.60282 -12.20025 -12.05877 -12.02216 -11.60499 -11.59555 -11.38348 -11.32563 -11.03468 -10.89040 -10.84614 -10.74633 -10.55664 -10.46599 -10.14178 -9.54718 -9.33342 -9.06651 -8.70420 -8.64161 -8.31053 -7.60218 -6.25644 -4.34837 3.14195 3.23504 3.30850 3.33392 3.60972 3.85797 4.20326 4.28594 4.43839 4.56754 4.74903 4.87016 4.92605 5.01128 5.02286 5.06005 5.25572 5.36074 5.45607 5.46949 5.53339 5.60007 5.69752 5.75205 5.81947 5.83899 5.90319 5.99789 6.06357 6.13937 6.17837 6.55555 6.74984 6.79509 6.89098 6.93087 7.04071 7.28972 7.39122 7.72528 7.77914 8.05587 8.61749 8.70778 9.23277 9.34022 9.48144 10.81637 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027840 B = 0.003416 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.499873 B = 8193.873996 C = 8730.691538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.014 3.986 3 N -0.471 5.471 4 C 0.002 3.998 5 C -0.135 4.135 6 C 0.016 3.984 7 H 0.084 0.916 8 C 0.162 3.838 9 N -0.745 5.745 10 C 0.716 3.284 11 O -0.599 6.599 12 N -0.628 5.628 13 C 0.107 3.893 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.539 4.539 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.892 5.892 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.114 3.886 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.390 0.610 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.385 0.615 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 1.671 17.237 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 N -0.194 5.194 4 C -0.127 4.127 5 C -0.173 4.173 6 C -0.094 4.094 7 H 0.102 0.898 8 C 0.037 3.963 9 N -0.403 5.403 10 C 0.418 3.582 11 O -0.478 6.478 12 N -0.365 5.365 13 C -0.017 4.017 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.394 6.394 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.531 5.531 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.008 4.008 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.224 0.776 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.236 0.764 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.573 2.452 16.822 20.019 hybrid contribution 0.405 -0.524 -0.474 0.814 sum -10.168 1.928 16.348 19.348 Atomic orbital electron populations 1.21708 0.94442 1.01767 1.02488 1.22650 0.96914 0.90830 1.01022 1.68618 1.05854 1.14910 1.30036 1.23823 0.98274 0.98920 0.91686 1.23348 0.96026 0.98658 0.99291 1.23786 0.90345 0.99060 0.96186 0.89819 1.20984 0.98182 0.92735 0.84391 1.44993 1.50469 1.32078 1.12711 1.15518 0.80889 0.82185 0.79593 1.90874 1.40917 1.34526 1.81505 1.47876 1.47471 1.26671 1.14465 1.21895 0.92279 0.87841 0.99643 1.22593 0.99190 0.99601 0.94008 1.19624 0.83481 0.85023 0.91120 1.86064 1.19410 1.62561 1.71403 1.21487 1.03722 1.41980 0.90566 0.91483 1.25089 0.94975 0.93692 0.99492 1.69646 1.04732 1.42349 1.36333 0.86391 0.77578 0.78495 0.84458 1.20424 1.21020 1.19680 1.23086 0.98698 1.00893 0.78124 0.92172 0.92857 0.91688 0.90733 0.94185 0.91367 0.89293 0.90673 0.88574 0.91501 0.91298 0.77565 0.93265 0.92949 0.90445 0.90854 0.76427 0.91936 0.89998 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.98 37.15 0.37 -0.80 16 2 C 0.01 0.13 5.34 -3.83 -0.02 0.11 16 3 N -0.47 -4.68 5.95 -230.71 -1.37 -6.06 16 4 C 0.00 0.01 7.10 -2.77 -0.02 -0.01 16 5 C -0.13 -1.05 7.84 -25.80 -0.20 -1.25 16 6 C 0.02 0.16 3.41 -66.65 -0.23 -0.07 16 7 H 0.08 0.76 7.80 -51.93 -0.40 0.35 16 8 C 0.16 2.20 5.80 -4.04 -0.02 2.18 16 9 N -0.75 -12.07 5.46 -65.23 -0.36 -12.43 16 10 C 0.72 15.36 8.49 -86.92 -0.74 14.62 16 11 O -0.60 -15.13 16.60 5.29 0.09 -15.05 16 12 N -0.63 -13.59 3.33 -176.22 -0.59 -14.18 16 13 C 0.11 1.94 6.15 -3.06 -0.02 1.92 16 14 C -0.12 -2.33 6.13 -24.90 -0.15 -2.49 16 15 C 0.25 6.11 0.89 -89.61 -0.08 6.03 16 16 O -0.58 -15.20 13.19 -35.23 -0.46 -15.66 16 17 C -0.54 -14.15 8.26 -34.44 -0.28 -14.43 16 18 H 0.07 1.72 7.79 -52.49 -0.41 1.31 16 19 C 0.07 1.86 5.26 -17.82 -0.09 1.77 16 20 N -0.89 -24.11 10.70 55.43 0.59 -23.52 16 21 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.11 2.84 5.50 -2.51 -0.01 2.83 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.39 7.54 -51.93 -0.39 0.00 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.72 6.55 -51.93 -0.34 0.38 16 30 H 0.04 0.32 7.69 -51.93 -0.40 -0.08 16 31 H 0.07 0.44 7.78 -51.92 -0.40 0.04 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.78 7.94 -51.93 -0.41 0.37 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 37 H 0.39 5.56 5.57 -40.82 -0.23 5.33 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.38 10.35 7.18 45.56 0.33 10.68 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.08 2.30 7.50 -51.93 -0.39 1.91 16 45 H 0.06 1.43 8.03 -51.93 -0.42 1.02 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -30.87 357.00 -10.06 -40.93 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -6.81 Total: 14.70 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -1.50 Total: 10.40 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -1.72 Total: -56.18 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.38 Total: -30.71 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.87 -10.06 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890059245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.806 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds