Wall clock time and date at job start Tue Mar 31 2020 03:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47208 * 2 1 4 4 C 1.46494 * 120.00372 * 273.18793 * 3 2 1 5 5 C 1.53012 * 109.47021 * 270.00287 * 4 3 2 6 6 C 1.50698 * 109.46882 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00269 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99617 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99960 * 179.97438 * 8 6 5 10 10 C 1.34783 * 119.99739 * 93.18891 * 3 2 1 11 11 O 1.21583 * 119.99960 * 174.15774 * 10 3 2 12 12 N 1.34771 * 119.99760 * 354.43334 * 10 3 2 13 13 C 1.46503 * 119.99707 * 184.55148 * 12 10 3 14 14 C 1.53010 * 109.47065 * 175.02300 * 13 12 10 15 15 C 1.50701 * 115.54908 * 306.48068 * 14 13 12 16 16 H 1.08001 * 119.99505 * 144.20558 * 15 14 13 17 17 C 1.37875 * 119.99709 * 324.19898 * 15 14 13 18 18 N 1.31512 * 120.00603 * 3.30755 * 17 15 14 19 19 Si 1.86802 * 119.99736 * 183.30155 * 17 15 14 20 20 H 1.48498 * 109.47036 * 89.99980 * 19 17 15 21 21 H 1.48501 * 109.47276 * 210.00289 * 19 17 15 22 22 H 1.48504 * 109.47139 * 330.00465 * 19 17 15 23 23 C 1.52997 * 117.49701 * 160.80776 * 14 13 12 24 24 C 1.52994 * 117.49558 * 92.14810 * 14 13 12 25 25 H 1.08996 * 109.47567 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46809 * 299.99768 * 1 2 3 27 27 H 1.08995 * 109.47677 * 59.99385 * 1 2 3 28 28 H 1.09009 * 109.46809 * 240.00232 * 2 1 3 29 29 H 1.08998 * 109.46963 * 120.00535 * 2 1 3 30 30 H 1.08998 * 109.47357 * 29.99459 * 4 3 2 31 31 H 1.08998 * 109.47531 * 150.00443 * 4 3 2 32 32 H 1.08998 * 109.46379 * 299.99771 * 5 4 3 33 33 H 1.08998 * 109.46841 * 59.99733 * 5 4 3 34 34 H 0.96996 * 119.99954 * 0.02562 * 8 6 5 35 35 H 1.08992 * 109.47209 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47260 * 300.01068 * 9 8 6 37 37 H 1.09009 * 109.47010 * 60.00550 * 9 8 6 38 38 H 0.96999 * 120.00787 * 4.55318 * 12 10 3 39 39 H 1.08997 * 109.47255 * 295.02332 * 13 12 10 40 40 H 1.08998 * 109.46996 * 55.02674 * 13 12 10 41 41 H 0.97001 * 120.00388 * 185.00566 * 18 17 15 42 42 H 1.09004 * 117.50001 * 359.97438 * 23 14 13 43 43 H 1.09002 * 117.50109 * 145.02079 * 23 14 13 44 44 H 1.09004 * 117.49956 * 214.97709 * 24 14 13 45 45 H 1.09003 * 117.50417 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1960 2.0954 -1.2667 5 6 3.6159 1.8638 -1.7879 6 6 3.7984 2.5979 -3.0912 7 8 2.8833 3.2433 -3.5571 8 7 4.9790 2.5382 -3.7386 9 6 5.1564 3.2515 -5.0059 10 6 2.3042 1.9949 1.1655 11 8 2.8089 3.1010 1.1623 12 7 2.0356 1.3800 2.3343 13 6 2.2531 2.0853 3.5998 14 6 1.7577 1.2179 4.7588 15 6 0.3367 0.7294 4.6438 16 1 0.0724 -0.2529 5.0068 17 6 -0.6258 1.5365 4.0754 18 7 -0.2918 2.7058 3.5748 19 14 -2.4046 0.9689 4.0161 20 1 -3.1084 1.4174 5.2444 21 1 -3.0705 1.5512 2.8234 22 1 -2.4488 -0.5132 3.9336 23 6 2.2818 1.5432 6.1589 24 6 2.7717 0.2896 5.4300 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.4762 1.7251 -1.9966 31 1 2.0367 3.1619 -1.1080 32 1 4.3356 2.2341 -1.0579 33 1 3.7751 0.7973 -1.9466 34 1 5.7110 2.0224 -3.3658 35 1 6.1678 3.0866 -5.3772 36 1 4.4368 2.8803 -5.7356 37 1 4.9963 4.3181 -4.8481 38 1 1.6983 0.4706 2.3378 39 1 3.3170 2.2865 3.7255 40 1 1.7039 3.0268 3.5901 41 1 -0.9781 3.3044 3.2408 42 1 2.9799 2.3750 6.2544 43 1 1.5989 1.4036 6.9970 44 1 2.4110 -0.6744 5.7889 45 1 3.7918 0.2963 5.0457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894568199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:43 Heat of formation + Delta-G solvation = -39.142418 kcal Electronic energy + Delta-G solvation = -25111.500169 eV Core-core repulsion = 21551.172086 eV Total energy + Delta-G solvation = -3560.328082 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90959 -39.19399 -36.84399 -35.43066 -34.69525 -33.26660 -32.18773 -31.60636 -29.49805 -27.14915 -25.84174 -25.15924 -23.44347 -22.55118 -21.21791 -20.49910 -19.22924 -18.77532 -17.59702 -17.33002 -16.23362 -16.00657 -15.61969 -15.48789 -14.87422 -14.52574 -14.00057 -13.90980 -13.72424 -13.57083 -13.21698 -13.04145 -12.68423 -12.57970 -12.48899 -12.30414 -11.91252 -11.69128 -11.52072 -11.36907 -11.09703 -10.81918 -10.80146 -10.68235 -10.50962 -10.22315 -9.97024 -9.67639 -9.29068 -9.19975 -8.93184 -8.80604 -8.30780 -8.23762 -7.60129 -5.96566 -4.16204 2.60595 3.00155 3.22596 3.32320 3.32584 3.46419 4.12869 4.31403 4.70676 4.80779 4.99760 5.05669 5.15744 5.21117 5.24800 5.30332 5.50069 5.54425 5.56798 5.64050 5.64914 5.97454 6.03990 6.06424 6.14400 6.20204 6.32513 6.34797 6.57005 6.63166 6.63509 6.77673 6.90771 6.98901 7.15493 7.27934 7.31183 7.58565 7.71471 7.84360 8.03292 8.13749 8.34735 8.80338 9.01234 9.47108 9.57228 10.93116 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.004015 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.600169 B = 6972.322125 C = 7706.978230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 N -0.638 5.638 4 C 0.157 3.843 5 C -0.157 4.157 6 C 0.518 3.482 7 O -0.539 6.539 8 N -0.741 5.741 9 C 0.087 3.913 10 C 0.705 3.295 11 O -0.605 6.605 12 N -0.699 5.699 13 C 0.184 3.816 14 C 0.038 3.962 15 C -0.498 4.498 16 H 0.059 0.941 17 C 0.078 3.922 18 N -0.861 5.861 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.402 0.598 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.393 0.607 39 H 0.014 0.986 40 H 0.111 0.889 41 H 0.262 0.738 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.704 -5.774 -12.487 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 N -0.376 5.376 4 C 0.032 3.968 5 C -0.198 4.198 6 C 0.305 3.695 7 O -0.415 6.415 8 N -0.394 5.394 9 C -0.057 4.057 10 C 0.406 3.594 11 O -0.485 6.485 12 N -0.350 5.350 13 C 0.060 3.940 14 C 0.037 3.963 15 C -0.535 4.535 16 H 0.077 0.923 17 C -0.127 4.127 18 N -0.497 5.497 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.237 4.237 24 C -0.251 4.251 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.228 0.772 39 H 0.032 0.968 40 H 0.129 0.871 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.298 -4.326 -12.943 15.972 hybrid contribution -0.745 -1.027 0.263 1.296 sum 7.553 -5.353 -12.680 15.700 Atomic orbital electron populations 1.22241 0.96063 1.01819 1.03290 1.21373 0.94646 0.82980 1.02088 1.47141 1.71150 1.14212 1.05115 1.20788 0.93074 0.99007 0.83957 1.22111 1.02237 1.01034 0.94439 1.20773 0.81919 0.80833 0.86003 1.90711 1.40828 1.41902 1.68054 1.45868 1.15167 1.53638 1.24700 1.21507 1.01393 0.97387 0.85401 1.15893 0.79283 0.83827 0.80399 1.90822 1.51019 1.20264 1.86401 1.44912 1.68185 1.17635 1.04262 1.20901 0.95263 0.98052 0.79797 1.19246 0.92847 0.95204 0.88974 1.20470 0.91060 1.01976 1.40023 0.92257 1.24958 0.98610 0.95225 0.93901 1.69896 1.32513 1.08592 1.38675 0.86673 0.85230 0.78926 0.77715 1.20651 1.21136 1.19823 1.22933 1.03862 0.97471 0.99477 1.22953 0.98761 0.94463 1.08888 0.92087 0.91012 0.92794 0.91298 0.90640 0.90628 0.89384 0.88095 0.89136 0.76484 0.90877 0.92370 0.92263 0.77188 0.96813 0.87116 0.92743 0.91498 0.90273 0.90735 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.11 1.55 5.88 -4.04 -0.02 1.52 16 3 N -0.64 -10.80 2.47 -179.42 -0.44 -11.24 16 4 C 0.16 2.45 4.67 -4.04 -0.02 2.43 16 5 C -0.16 -1.93 6.02 -27.88 -0.17 -2.10 16 6 C 0.52 6.70 7.83 -10.99 -0.09 6.61 16 7 O -0.54 -9.10 15.98 5.56 0.09 -9.01 16 8 N -0.74 -6.82 5.71 -67.08 -0.38 -7.20 16 9 C 0.09 0.69 10.70 59.85 0.64 1.33 16 10 C 0.70 15.13 8.25 -86.92 -0.72 14.42 16 11 O -0.61 -15.13 15.99 5.29 0.08 -15.05 16 12 N -0.70 -15.11 4.90 -65.22 -0.32 -15.43 16 13 C 0.18 4.38 4.61 -4.04 -0.02 4.36 16 14 C 0.04 0.89 2.04 -155.66 -0.32 0.57 16 15 C -0.50 -12.50 8.40 -34.44 -0.29 -12.79 16 16 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 17 C 0.08 1.98 5.29 -17.82 -0.09 1.88 16 18 N -0.86 -22.97 10.18 55.43 0.56 -22.40 16 19 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.20 -4.33 9.96 -26.70 -0.27 -4.59 16 24 C -0.21 -4.39 9.92 -26.70 -0.26 -4.66 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.73 8.10 -51.92 -0.42 0.31 16 29 H 0.08 1.03 6.36 -51.93 -0.33 0.70 16 30 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 31 H 0.09 1.67 7.47 -51.93 -0.39 1.28 16 32 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 2.49 8.83 -40.82 -0.36 2.13 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.39 8.04 5.84 -40.82 -0.24 7.80 16 39 H 0.01 0.32 8.08 -51.93 -0.42 -0.10 16 40 H 0.11 3.05 5.97 -51.93 -0.31 2.74 16 41 H 0.26 6.93 8.32 -40.82 -0.34 6.60 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -31.70 372.44 -8.56 -40.26 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -7.50 Total: 12.64 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.24 Total: 6.82 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.58 Total: -56.28 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.06 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.70 -8.56 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894568199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.122 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds