Wall clock time and date at job start Tue Mar 31 2020 03:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47208 * 2 1 4 4 C 1.46494 * 120.00372 * 273.18793 * 3 2 1 5 5 C 1.53012 * 109.47021 * 270.00287 * 4 3 2 6 6 C 1.50698 * 109.46882 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00269 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99617 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99960 * 179.97438 * 8 6 5 10 10 C 1.34783 * 119.99739 * 93.18891 * 3 2 1 11 11 O 1.21583 * 119.99960 * 174.15774 * 10 3 2 12 12 N 1.34771 * 119.99760 * 354.43334 * 10 3 2 13 13 C 1.46503 * 119.99707 * 184.55148 * 12 10 3 14 14 C 1.53010 * 109.47065 * 175.02300 * 13 12 10 15 15 C 1.50701 * 115.54908 * 306.48068 * 14 13 12 16 16 H 1.08001 * 119.99505 * 144.20558 * 15 14 13 17 17 C 1.37875 * 119.99709 * 324.19898 * 15 14 13 18 18 N 1.31512 * 120.00603 * 3.30755 * 17 15 14 19 19 Si 1.86802 * 119.99736 * 183.30155 * 17 15 14 20 20 H 1.48498 * 109.47036 * 89.99980 * 19 17 15 21 21 H 1.48501 * 109.47276 * 210.00289 * 19 17 15 22 22 H 1.48504 * 109.47139 * 330.00465 * 19 17 15 23 23 C 1.52997 * 117.49701 * 160.80776 * 14 13 12 24 24 C 1.52994 * 117.49558 * 92.14810 * 14 13 12 25 25 H 1.08996 * 109.47567 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46809 * 299.99768 * 1 2 3 27 27 H 1.08995 * 109.47677 * 59.99385 * 1 2 3 28 28 H 1.09009 * 109.46809 * 240.00232 * 2 1 3 29 29 H 1.08998 * 109.46963 * 120.00535 * 2 1 3 30 30 H 1.08998 * 109.47357 * 29.99459 * 4 3 2 31 31 H 1.08998 * 109.47531 * 150.00443 * 4 3 2 32 32 H 1.08998 * 109.46379 * 299.99771 * 5 4 3 33 33 H 1.08998 * 109.46841 * 59.99733 * 5 4 3 34 34 H 0.96996 * 119.99954 * 0.02562 * 8 6 5 35 35 H 1.08992 * 109.47209 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47260 * 300.01068 * 9 8 6 37 37 H 1.09009 * 109.47010 * 60.00550 * 9 8 6 38 38 H 0.96999 * 120.00787 * 4.55318 * 12 10 3 39 39 H 1.08997 * 109.47255 * 295.02332 * 13 12 10 40 40 H 1.08998 * 109.46996 * 55.02674 * 13 12 10 41 41 H 0.97001 * 120.00388 * 185.00566 * 18 17 15 42 42 H 1.09004 * 117.50001 * 359.97438 * 23 14 13 43 43 H 1.09002 * 117.50109 * 145.02079 * 23 14 13 44 44 H 1.09004 * 117.49956 * 214.97709 * 24 14 13 45 45 H 1.09003 * 117.50417 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1960 2.0954 -1.2667 5 6 3.6159 1.8638 -1.7879 6 6 3.7984 2.5979 -3.0912 7 8 2.8833 3.2433 -3.5571 8 7 4.9790 2.5382 -3.7386 9 6 5.1564 3.2515 -5.0059 10 6 2.3042 1.9949 1.1655 11 8 2.8089 3.1010 1.1623 12 7 2.0356 1.3800 2.3343 13 6 2.2531 2.0853 3.5998 14 6 1.7577 1.2179 4.7588 15 6 0.3367 0.7294 4.6438 16 1 0.0724 -0.2529 5.0068 17 6 -0.6258 1.5365 4.0754 18 7 -0.2918 2.7058 3.5748 19 14 -2.4046 0.9689 4.0161 20 1 -3.1084 1.4174 5.2444 21 1 -3.0705 1.5512 2.8234 22 1 -2.4488 -0.5132 3.9336 23 6 2.2818 1.5432 6.1589 24 6 2.7717 0.2896 5.4300 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.4762 1.7251 -1.9966 31 1 2.0367 3.1619 -1.1080 32 1 4.3356 2.2341 -1.0579 33 1 3.7751 0.7973 -1.9466 34 1 5.7110 2.0224 -3.3658 35 1 6.1678 3.0866 -5.3772 36 1 4.4368 2.8803 -5.7356 37 1 4.9963 4.3181 -4.8481 38 1 1.6983 0.4706 2.3378 39 1 3.3170 2.2865 3.7255 40 1 1.7039 3.0268 3.5901 41 1 -0.9781 3.3044 3.2408 42 1 2.9799 2.3750 6.2544 43 1 1.5989 1.4036 6.9970 44 1 2.4110 -0.6744 5.7889 45 1 3.7918 0.2963 5.0457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894568199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:43 Heat of formation + Delta-G solvation = -60.592505 kcal Electronic energy + Delta-G solvation = -25112.430314 eV Core-core repulsion = 21551.172086 eV Total energy + Delta-G solvation = -3561.258228 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22384 -40.50281 -38.58161 -36.94034 -35.61227 -34.89063 -34.09805 -32.89508 -30.73973 -28.27781 -27.58304 -26.80256 -24.60049 -23.90225 -22.91256 -21.48202 -21.07761 -20.34956 -19.09466 -18.39126 -17.95103 -17.07025 -16.89460 -16.71382 -16.64243 -16.09492 -15.60235 -15.32019 -15.03765 -14.80053 -14.61410 -14.26467 -14.23883 -13.94417 -13.56638 -13.44146 -13.24837 -13.17372 -12.96758 -12.94765 -12.71298 -12.52334 -12.28875 -12.04389 -12.00832 -11.97056 -11.49043 -11.08521 -10.95037 -10.79453 -10.62628 -10.13515 -10.12001 -9.85676 -9.24831 -7.90820 -6.15631 1.41282 1.46149 1.53077 1.60306 1.80545 2.29661 2.42942 2.56705 3.04638 3.37472 3.70162 3.84061 4.04682 4.06596 4.14388 4.32245 4.41391 4.47890 4.54307 4.57461 4.59182 4.62609 4.78968 4.83558 4.86331 4.90537 4.95056 4.98255 5.00132 5.05118 5.17325 5.33513 5.40520 5.44858 5.57005 5.64277 5.74170 5.99934 6.04714 6.20266 6.42028 6.52601 6.86210 7.24208 7.35884 7.49672 7.89491 8.95428 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.004015 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.600169 B = 6972.322125 C = 7706.978230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 N -0.629 5.629 4 C 0.156 3.844 5 C -0.143 4.143 6 C 0.515 3.485 7 O -0.587 6.587 8 N -0.724 5.724 9 C 0.083 3.917 10 C 0.699 3.301 11 O -0.649 6.649 12 N -0.694 5.694 13 C 0.197 3.803 14 C 0.009 3.991 15 C -0.501 4.501 16 H 0.059 0.941 17 C 0.041 3.959 18 N -0.886 5.886 19 Si 0.939 3.061 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.260 1.260 23 C -0.201 4.201 24 C -0.184 4.184 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.399 0.601 39 H 0.011 0.989 40 H 0.070 0.930 41 H 0.252 0.748 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.885 -8.611 -13.426 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.013 4.013 3 N -0.366 5.366 4 C 0.032 3.968 5 C -0.184 4.184 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.377 5.377 9 C -0.061 4.061 10 C 0.400 3.600 11 O -0.532 6.532 12 N -0.346 5.346 13 C 0.072 3.928 14 C 0.008 3.992 15 C -0.538 4.538 16 H 0.077 0.923 17 C -0.161 4.161 18 N -0.523 5.523 19 Si 0.766 3.234 20 H -0.210 1.210 21 H -0.221 1.221 22 H -0.184 1.184 23 C -0.240 4.240 24 C -0.221 4.221 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.133 0.867 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.256 0.744 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.235 0.765 39 H 0.029 0.971 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.516 -7.239 -13.899 18.334 hybrid contribution -1.071 -0.149 0.535 1.206 sum 8.446 -7.389 -13.365 17.451 Atomic orbital electron populations 1.22200 0.96668 1.02966 1.01149 1.21674 0.94065 0.81104 1.04481 1.47141 1.70084 1.15411 1.03984 1.20793 0.95953 0.96490 0.83555 1.21940 0.99393 1.03321 0.93750 1.20865 0.82423 0.80358 0.86157 1.90697 1.42681 1.44022 1.69305 1.45766 1.14396 1.52850 1.24660 1.21672 1.03633 0.96246 0.84543 1.16122 0.79042 0.83413 0.81435 1.90783 1.52938 1.22259 1.87207 1.44735 1.68279 1.17714 1.03828 1.20535 0.94256 0.96844 0.81193 1.19263 0.93123 0.97215 0.89561 1.20667 0.92007 1.01762 1.39396 0.92269 1.25504 1.01524 0.95193 0.93847 1.70102 1.32713 1.09547 1.39911 0.85841 0.81550 0.79116 0.76861 1.21042 1.22075 1.18388 1.22955 1.03949 0.98738 0.98321 1.22947 0.98670 0.94130 1.06345 0.89278 0.95419 0.92597 0.86697 0.90325 0.89050 0.93772 0.89040 0.85205 0.74408 0.86928 0.92863 0.93823 0.76467 0.97084 0.91166 0.93791 0.90792 0.90467 0.89626 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 10.24 71.98 0.74 -3.96 16 2 C 0.11 2.71 5.88 86.38 0.51 3.22 16 3 N -0.63 -20.93 2.47 -839.83 -2.08 -23.01 16 4 C 0.16 4.86 4.67 86.38 0.40 5.26 16 5 C -0.14 -3.30 6.02 29.85 0.18 -3.12 16 6 C 0.51 12.79 7.83 87.66 0.69 13.48 16 7 O -0.59 -20.02 15.98 -3.03 -0.05 -20.07 16 8 N -0.72 -11.79 5.71 -484.52 -2.77 -14.56 16 9 C 0.08 1.16 10.70 127.77 1.37 2.52 16 10 C 0.70 30.58 8.25 179.05 1.48 32.06 16 11 O -0.65 -33.80 15.99 -3.98 -0.06 -33.86 16 12 N -0.69 -30.33 4.90 -478.53 -2.35 -32.67 16 13 C 0.20 9.57 4.61 86.38 0.40 9.97 16 14 C 0.01 0.42 2.04 -52.93 -0.11 0.31 16 15 C -0.50 -24.94 8.40 25.60 0.22 -24.72 16 16 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 17 C 0.04 2.11 5.29 84.65 0.45 2.56 16 18 N -0.89 -48.83 10.18 21.45 0.22 -48.61 16 19 Si 0.94 41.38 29.54 68.60 2.03 43.41 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 23 C -0.20 -8.54 9.96 30.62 0.30 -8.24 16 24 C -0.18 -7.15 9.92 30.62 0.30 -6.84 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.11 1.89 8.10 -2.38 -0.02 1.87 16 29 H 0.08 1.95 6.36 -2.39 -0.02 1.93 16 30 H 0.09 2.54 8.03 -2.39 -0.02 2.52 16 31 H 0.04 1.76 7.47 -2.39 -0.02 1.75 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.42 3.89 8.83 -92.71 -0.82 3.07 16 35 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.40 16.18 5.84 -92.71 -0.54 15.64 16 39 H 0.01 0.53 8.08 -2.39 -0.02 0.51 16 40 H 0.07 4.04 5.97 -2.39 -0.01 4.03 16 41 H 0.25 13.94 8.32 -92.71 -0.77 13.17 16 42 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -72.35 372.44 1.49 -70.86 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.37 Total: 36.03 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 6.92 Total: 22.49 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -6.97 Total: -118.85 kcal Atomic # 8 Polarization: -53.82 SS G_CDS: -0.11 Total: -53.93 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -72.35 1.49 -70.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894568199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.268 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds