Wall clock time and date at job start Tue Mar 31 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46987 * 2 1 4 4 C 1.45758 * 117.94153 * 90.00319 * 3 2 1 5 5 C 1.52921 * 110.31891 * 198.96869 * 4 3 2 6 6 C 1.53336 * 108.67709 * 309.34996 * 5 4 3 7 7 C 1.53073 * 108.42581 * 67.53096 * 6 5 4 8 8 H 1.08996 * 109.40189 * 71.14443 * 7 6 5 9 9 N 1.46504 * 109.40250 * 190.97489 * 7 6 5 10 10 C 1.34779 * 119.99604 * 204.99926 * 9 7 6 11 11 O 1.21585 * 120.00291 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99323 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99568 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46919 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.46836 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47319 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99244 * 359.97438 * 16 15 14 18 18 C 1.37868 * 120.00366 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00093 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00015 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47534 * 89.99981 * 20 18 16 22 22 H 1.48501 * 109.46759 * 210.00039 * 20 18 16 23 23 H 1.48494 * 109.46862 * 329.99629 * 20 18 16 24 24 C 1.32957 * 117.64571 * 270.00663 * 3 2 1 25 25 O 1.21277 * 118.35587 * 357.84260 * 24 3 2 26 26 H 1.08989 * 109.47135 * 299.99753 * 1 2 3 27 27 H 1.09004 * 109.47137 * 59.99682 * 1 2 3 28 28 H 1.08994 * 109.46796 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47075 * 240.00368 * 2 1 3 30 30 H 1.08997 * 109.47523 * 120.00356 * 2 1 3 31 31 H 1.09002 * 109.30363 * 78.76105 * 4 3 2 32 32 H 1.08998 * 109.30258 * 319.17671 * 4 3 2 33 33 H 1.09002 * 109.59975 * 69.10501 * 5 4 3 34 34 H 1.09002 * 109.60229 * 189.42713 * 5 4 3 35 35 H 1.08998 * 109.67812 * 187.26136 * 6 5 4 36 36 H 1.08998 * 109.67685 * 307.76219 * 6 5 4 37 37 H 0.97001 * 119.99783 * 24.99274 * 9 7 6 38 38 H 0.96998 * 120.00284 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.47330 * 299.99891 * 13 12 10 40 40 H 1.09001 * 109.47354 * 60.00323 * 13 12 10 41 41 H 1.08992 * 109.46891 * 299.99553 * 14 13 12 42 42 H 1.09001 * 109.47017 * 59.99904 * 14 13 12 43 43 H 1.09004 * 109.47450 * 299.99701 * 15 14 13 44 44 H 1.08995 * 109.47666 * 59.99936 * 15 14 13 45 45 H 0.97005 * 119.99741 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2460 2.0252 1.2877 5 6 2.2888 3.5447 1.1213 6 6 3.2677 3.8877 -0.0080 7 6 2.6777 3.3865 -1.3285 8 1 1.8267 4.0093 -1.6044 9 7 3.6975 3.4636 -2.3775 10 6 3.3285 3.5706 -3.6694 11 8 2.1494 3.6027 -3.9643 12 7 4.2668 3.6420 -4.6344 13 6 3.8658 3.7589 -6.0386 14 6 5.1136 3.8207 -6.9218 15 6 4.6948 3.9422 -8.3883 16 6 5.9238 4.0024 -9.2585 17 1 6.9054 3.9589 -8.8101 18 6 5.7951 4.1142 -10.6266 19 7 6.8677 4.1673 -11.3858 20 14 4.0973 4.1901 -11.4019 21 1 3.6582 5.6056 -11.4944 22 1 4.1476 3.5975 -12.7626 23 1 3.1365 3.4275 -10.5651 24 6 2.2238 1.9630 -1.1778 25 8 2.0358 1.3109 -2.1829 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.1946 1.6810 1.6999 32 1 1.4391 1.7601 1.9708 33 1 1.2946 3.9129 0.8680 34 1 2.6234 4.0051 2.0510 35 1 3.4092 4.9674 -0.0557 36 1 4.2250 3.3999 0.1754 37 1 4.6382 3.4376 -2.1423 38 1 5.2074 3.6160 -4.3992 39 1 3.2656 2.8930 -6.3184 40 1 3.2787 4.6672 -6.1745 41 1 5.7141 4.6863 -6.6422 42 1 5.7003 2.9122 -6.7859 43 1 4.0945 3.0763 -8.6677 44 1 4.1079 4.8504 -8.5246 45 1 6.7771 4.2455 -12.3484 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916743902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:44 Heat of formation + Delta-G solvation = -104.673249 kcal Electronic energy + Delta-G solvation = -24098.805053 eV Core-core repulsion = 20535.635340 eV Total energy + Delta-G solvation = -3563.169712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97230 -40.63487 -37.56325 -37.27950 -36.41638 -35.15558 -34.17997 -33.10800 -31.03694 -30.04147 -28.58112 -25.66251 -24.90524 -24.02258 -22.79943 -22.26437 -21.79273 -20.00914 -19.18166 -18.82869 -18.08643 -17.67917 -17.50080 -16.66429 -16.48966 -16.06191 -15.66591 -15.36847 -15.25852 -15.18535 -14.77795 -14.73144 -14.69858 -14.30377 -13.81372 -13.67017 -13.43124 -13.09653 -12.84773 -12.73904 -12.70574 -12.50271 -12.22991 -11.98071 -11.93825 -11.81462 -11.77443 -11.60574 -11.34362 -11.30450 -11.14731 -10.76494 -10.26889 -9.79951 -9.70574 -8.29994 -6.33516 1.32971 1.35894 1.37949 1.50241 1.81724 1.99913 2.29371 2.35993 3.05644 3.26779 3.53878 3.64970 3.83212 4.01172 4.09430 4.13395 4.20600 4.22342 4.34147 4.45820 4.49897 4.55881 4.64107 4.78950 4.83902 4.88569 4.90249 4.99517 5.03418 5.06482 5.07975 5.21504 5.26655 5.39356 5.40808 5.52068 5.53756 5.55218 5.64368 5.94521 6.27068 6.46330 6.73864 7.06541 7.19766 7.31230 7.59141 8.86340 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029885 B = 0.002497 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.700670 B =11209.598680 C =11666.004696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.598 5.598 4 C 0.102 3.898 5 C -0.128 4.128 6 C -0.119 4.119 7 C 0.154 3.846 8 H 0.095 0.905 9 N -0.718 5.718 10 C 0.702 3.298 11 O -0.629 6.629 12 N -0.732 5.732 13 C 0.148 3.852 14 C -0.097 4.097 15 C -0.013 4.013 16 C -0.529 4.529 17 H 0.039 0.961 18 C 0.006 3.994 19 N -0.949 5.949 20 Si 0.946 3.054 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.252 1.252 24 C 0.487 3.513 25 O -0.586 6.586 26 H 0.075 0.925 27 H 0.022 0.978 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.415 0.585 38 H 0.411 0.589 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.021 0.979 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 -2.751 36.475 37.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.330 5.330 4 C -0.018 4.018 5 C -0.166 4.166 6 C -0.157 4.157 7 C 0.045 3.955 8 H 0.113 0.887 9 N -0.375 5.375 10 C 0.402 3.598 11 O -0.509 6.509 12 N -0.388 5.388 13 C 0.023 3.977 14 C -0.135 4.135 15 C -0.051 4.051 16 C -0.567 4.567 17 H 0.058 0.942 18 C -0.191 4.191 19 N -0.590 5.590 20 Si 0.770 3.230 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.176 1.176 24 C 0.274 3.726 25 O -0.465 6.465 26 H 0.094 0.906 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.253 0.747 38 H 0.247 0.753 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.040 0.960 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.999 -3.017 35.518 37.021 hybrid contribution 0.296 -0.200 -1.149 1.203 sum -9.703 -3.217 34.369 35.857 Atomic orbital electron populations 1.22034 0.95528 1.02859 1.01362 1.21564 0.94850 0.82749 1.03363 1.47531 1.64443 1.14694 1.06379 1.21836 1.03750 0.93402 0.82862 1.21905 1.00072 0.94398 1.00266 1.21989 1.00265 1.03749 0.89675 1.20779 0.93220 0.91814 0.89696 0.88736 1.44658 1.10172 1.79369 1.03316 1.16117 0.84801 0.77198 0.81690 1.90883 1.18295 1.59200 1.82525 1.44980 1.09162 1.78952 1.05671 1.21123 0.97236 1.00663 0.78664 1.21461 0.95789 1.02173 0.94061 1.19468 0.95692 0.96724 0.93173 1.21442 0.93457 1.49812 0.92002 0.94230 1.25954 1.00852 0.94270 0.98050 1.70054 1.31011 1.52427 1.05510 0.85716 0.80194 0.79411 0.77719 1.19010 1.20901 1.17578 1.21070 0.77630 0.90707 0.83235 1.90755 1.52857 1.64821 1.38097 0.90614 0.95836 0.90375 0.92853 0.87022 0.89292 0.88362 0.91246 0.85511 0.88060 0.88715 0.74716 0.75304 0.93756 0.92442 0.91194 0.91955 0.96467 0.96049 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.22 71.98 0.74 -1.67 16 2 C 0.10 1.52 5.92 86.38 0.51 2.03 16 3 N -0.60 -9.39 2.80 -827.20 -2.32 -11.71 16 4 C 0.10 0.52 6.33 86.49 0.55 1.06 16 5 C -0.13 -0.43 6.02 30.68 0.18 -0.25 16 6 C -0.12 -0.85 5.50 30.73 0.17 -0.69 16 7 C 0.15 3.06 2.70 44.10 0.12 3.18 16 8 H 0.09 2.32 7.58 -2.39 -0.02 2.30 16 9 N -0.72 -16.02 4.97 -462.08 -2.30 -18.32 16 10 C 0.70 23.10 7.99 179.05 1.43 24.53 16 11 O -0.63 -27.21 15.54 -2.22 -0.03 -27.24 16 12 N -0.73 -21.95 5.56 -478.51 -2.66 -24.62 16 13 C 0.15 5.33 5.67 86.38 0.49 5.82 16 14 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 15 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 16 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 17 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 18 C 0.01 0.34 5.47 84.65 0.46 0.80 16 19 N -0.95 -60.28 13.96 21.44 0.30 -59.98 16 20 Si 0.95 45.85 27.47 68.60 1.88 47.73 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 24 C 0.49 12.11 7.17 87.77 0.63 12.74 16 25 O -0.59 -21.88 14.89 -1.26 -0.02 -21.90 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 1.21 7.11 -2.39 -0.02 1.20 16 30 H 0.11 0.90 8.01 -2.39 -0.02 0.88 16 31 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.10 0.15 8.10 -2.39 -0.02 0.13 16 33 H 0.07 0.39 8.12 -2.39 -0.02 0.37 16 34 H 0.13 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.09 0.41 8.10 -2.39 -0.02 0.39 16 37 H 0.42 6.01 8.60 -92.71 -0.80 5.22 16 38 H 0.41 9.37 8.49 -92.71 -0.79 8.59 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 44 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 45 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -88.95 364.53 0.01 -88.94 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.65 Total: 14.23 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.81 Total: 12.87 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -6.98 Total: -114.63 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.05 Total: -49.14 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Total: -88.95 0.01 -88.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916743902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.737 kcal (2) G-P(sol) polarization free energy of solvation -88.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds