Wall clock time and date at job start Tue Mar 31 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46500 * 120.00784 * 270.00147 * 3 2 1 5 5 C 1.50700 * 109.46725 * 89.99497 * 4 3 2 6 6 H 1.07996 * 120.00383 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00027 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46927 * 90.00267 * 9 7 5 11 11 H 1.48504 * 109.46979 * 210.00338 * 9 7 5 12 12 H 1.48497 * 109.47140 * 330.00199 * 9 7 5 13 13 C 1.34785 * 120.00049 * 89.99908 * 3 2 1 14 14 O 1.21280 * 120.00330 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99545 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46899 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99962 * 179.97438 * 16 15 13 18 18 H 1.09007 * 110.43185 * 32.46154 * 17 16 15 19 19 C 1.51276 * 110.48748 * 269.77447 * 17 16 15 20 20 O 1.21279 * 124.94388 * 77.54093 * 19 17 16 21 21 N 1.34424 * 110.11282 * 257.57176 * 19 17 16 22 22 C 1.46758 * 111.30261 * 0.40654 * 21 19 17 23 23 C 1.54484 * 105.47590 * 342.98658 * 22 21 19 24 24 C 1.52999 * 110.96439 * 267.29384 * 23 22 21 25 25 C 1.52992 * 111.00321 * 143.54602 * 23 22 21 26 26 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 31 31 H 1.08987 * 109.47905 * 210.00002 * 4 3 2 32 32 H 1.09002 * 109.46739 * 330.00111 * 4 3 2 33 33 H 0.97000 * 120.00018 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46882 * 299.99456 * 15 13 3 35 35 H 1.09003 * 109.47544 * 59.99294 * 15 13 3 36 36 H 1.00900 * 111.00410 * 56.04089 * 16 15 13 37 37 H 0.97000 * 124.34344 * 180.40592 * 21 19 17 38 38 H 1.08993 * 110.24802 * 223.98035 * 22 21 19 39 39 H 1.09001 * 110.31449 * 102.01969 * 22 21 19 40 40 H 1.09005 * 109.46734 * 172.37296 * 24 23 22 41 41 H 1.08992 * 109.47277 * 292.37963 * 24 23 22 42 42 H 1.09002 * 109.47055 * 52.37879 * 24 23 22 43 43 H 1.09001 * 109.47273 * 307.59852 * 25 23 22 44 44 H 1.08999 * 109.47386 * 67.60132 * 25 23 22 45 45 H 1.08999 * 109.47082 * 187.60124 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 1.0066 2.7823 -1.7036 6 1 0.1158 2.7253 -1.0957 7 6 0.9949 3.5050 -2.8777 8 7 -0.1010 4.1254 -3.2571 9 14 2.5359 3.6042 -3.9289 10 1 2.5404 2.4871 -4.9073 11 1 2.5567 4.8990 -4.6559 12 1 3.7355 3.5055 -3.0593 13 6 2.2429 2.0166 1.1673 14 8 2.6468 3.1602 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3109 2.2057 3.5889 17 6 2.0774 1.5454 4.8802 18 1 2.2809 0.4772 4.8038 19 6 0.6590 1.7849 5.3485 20 8 -0.3194 1.2073 4.9243 21 7 0.6409 2.7315 6.3028 22 6 1.9911 3.2358 6.5792 23 6 2.9537 2.1857 5.9817 24 6 3.3549 1.1496 7.0336 25 6 4.1896 2.8555 5.3778 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.0643 2.7985 -1.1383 32 1 2.5506 1.3453 -2.0283 33 1 -0.1091 4.6341 -4.0829 34 1 0.9444 1.0114 2.5302 35 1 2.6227 0.4185 2.5299 36 1 1.7859 3.0648 3.5222 37 1 -0.1616 3.0413 6.7511 38 1 2.1484 3.3233 7.6542 39 1 2.1403 4.2018 6.0968 40 1 3.9210 0.3489 6.5575 41 1 3.9704 1.6260 7.7965 42 1 2.4588 0.7356 7.4960 43 1 3.8774 3.6345 4.6823 44 1 4.7886 3.2979 6.1738 45 1 4.7834 2.1113 4.8471 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931660893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:11 Heat of formation + Delta-G solvation = -63.897319 kcal Electronic energy + Delta-G solvation = -25279.318352 eV Core-core repulsion = 21717.916817 eV Total energy + Delta-G solvation = -3561.401535 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04331 -39.09073 -37.27347 -35.49432 -34.80470 -33.22656 -32.58308 -30.18573 -28.85472 -27.66973 -27.26065 -26.04559 -24.75377 -22.70758 -21.96967 -20.80700 -19.74398 -18.39576 -17.42380 -16.99242 -16.64906 -16.22787 -15.83496 -15.32687 -14.83472 -14.58825 -14.55672 -14.03815 -13.96819 -13.62411 -13.55943 -13.18221 -12.85537 -12.71963 -12.49249 -12.39285 -12.21016 -12.11008 -11.84100 -11.58486 -11.51341 -11.34000 -11.12784 -10.97604 -10.87731 -10.64589 -10.35894 -10.32305 -10.07118 -9.45096 -9.32935 -8.98307 -8.55444 -8.40328 -7.67654 -6.04823 -4.02928 2.34455 3.13490 3.29323 3.36959 3.38136 3.42249 3.64116 4.03678 4.07389 4.33666 4.43094 4.53983 4.71734 5.02880 5.07307 5.16172 5.19841 5.28911 5.32847 5.37104 5.48724 5.52775 5.59790 5.66695 5.77698 5.80192 5.86176 5.87384 6.00803 6.16995 6.38472 6.40748 6.53390 6.62302 6.75505 6.78787 6.89236 7.02871 7.16110 7.40433 7.65497 8.03828 8.29549 8.51418 8.97694 9.03599 9.55754 11.08461 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.003804 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.577726 B = 7358.284701 C = 7655.900644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.525 4.525 6 H 0.076 0.924 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.510 3.490 14 O -0.529 6.529 15 C 0.034 3.966 16 N -0.637 5.637 17 C 0.063 3.937 18 H 0.111 0.889 19 C 0.487 3.513 20 O -0.529 6.529 21 N -0.729 5.729 22 C 0.105 3.895 23 C -0.069 4.069 24 C -0.137 4.137 25 C -0.117 4.117 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.355 0.645 37 H 0.408 0.592 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -7.565 20.946 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.012 4.012 3 N -0.327 5.327 4 C 0.096 3.904 5 C -0.563 4.563 6 H 0.094 0.906 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.188 1.188 13 C 0.296 3.704 14 O -0.406 6.406 15 C -0.098 4.098 16 N -0.269 5.269 17 C -0.051 4.051 18 H 0.129 0.871 19 C 0.271 3.729 20 O -0.403 6.403 21 N -0.385 5.385 22 C -0.020 4.020 23 C -0.070 4.070 24 C -0.195 4.195 25 C -0.175 4.175 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.175 0.825 37 H 0.246 0.754 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.787 -7.328 20.456 23.082 hybrid contribution -0.888 0.250 -0.414 1.011 sum 6.899 -7.078 20.042 22.347 Atomic orbital electron populations 1.22236 0.95943 1.01030 1.03776 1.21418 0.94907 0.83225 1.01642 1.47935 1.64334 1.13417 1.06967 1.19660 0.98189 0.92612 0.79922 1.21362 0.97346 1.30608 1.07020 0.90604 1.24866 0.95945 0.94850 0.97414 1.69899 1.27221 1.33094 1.23516 0.86875 0.84427 0.77806 0.80804 1.20189 1.21039 1.18829 1.20086 0.78658 0.86867 0.84775 1.90667 1.45583 1.17360 1.86960 1.22050 1.01420 0.96356 0.89959 1.60453 1.61036 1.06890 0.98519 1.22515 0.90503 1.01072 0.90993 0.87070 1.21995 0.92614 0.79190 0.79111 1.90775 1.40068 1.51117 1.58372 1.46240 1.10221 1.41137 1.40931 1.22337 0.80827 0.97643 1.01174 1.21574 0.95785 0.95448 0.94237 1.21814 1.01404 0.98368 0.97904 1.21516 0.94772 1.01331 0.99895 0.93147 0.92769 0.90251 0.91877 0.90703 0.94128 0.95778 0.92648 0.91436 0.88408 0.82531 0.75374 0.90214 0.90444 0.91692 0.91654 0.92718 0.90743 0.93273 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.24 37.16 0.38 -2.48 16 2 C 0.11 1.80 5.98 -4.04 -0.02 1.77 16 3 N -0.59 -12.26 2.46 -175.07 -0.43 -12.69 16 4 C 0.22 5.32 4.27 -5.19 -0.02 5.30 16 5 C -0.52 -15.09 9.48 -34.44 -0.33 -15.42 16 6 H 0.08 2.40 7.67 -52.49 -0.40 1.99 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 9 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.51 10.40 7.71 -10.98 -0.08 10.31 16 14 O -0.53 -12.87 15.78 5.56 0.09 -12.78 16 15 C 0.03 0.52 4.57 -4.98 -0.02 0.50 16 16 N -0.64 -8.72 4.32 -108.00 -0.47 -9.19 16 17 C 0.06 0.69 2.67 -67.72 -0.18 0.51 16 18 H 0.11 1.14 7.59 -51.92 -0.39 0.75 16 19 C 0.49 6.26 7.76 -10.86 -0.08 6.18 16 20 O -0.53 -9.07 18.00 5.56 0.10 -8.97 16 21 N -0.73 -6.87 6.24 -59.21 -0.37 -7.24 16 22 C 0.10 0.76 6.90 -3.12 -0.02 0.74 16 23 C -0.07 -0.56 0.98 -152.88 -0.15 -0.70 16 24 C -0.14 -0.87 8.49 37.16 0.32 -0.55 16 25 C -0.12 -1.01 7.91 37.15 0.29 -0.71 16 26 H 0.05 0.87 7.22 -51.93 -0.38 0.50 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.59 7.26 -51.93 -0.38 1.22 16 29 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 30 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 31 H 0.04 1.08 6.48 -51.94 -0.34 0.74 16 32 H 0.02 0.56 7.32 -51.93 -0.38 0.18 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.07 1.08 7.16 -51.93 -0.37 0.71 16 35 H 0.10 1.23 7.34 -51.93 -0.38 0.85 16 36 H 0.35 5.47 8.14 -39.29 -0.32 5.15 16 37 H 0.41 3.28 8.96 -40.82 -0.37 2.91 16 38 H 0.08 0.40 7.91 -51.93 -0.41 -0.01 16 39 H 0.08 0.57 7.82 -51.93 -0.41 0.17 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.79 7.35 -51.93 -0.38 0.41 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -35.79 361.11 -6.91 -42.69 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.35 Total: 5.44 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.02 Total: 7.44 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.49 Total: -56.28 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.19 Total: -21.76 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.79 -6.91 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931660893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.206 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds