Wall clock time and date at job start Tue Mar 31 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46805 * 2 1 4 4 N 1.46901 * 109.47191 * 119.99419 * 2 1 3 5 5 C 1.46901 * 111.00286 * 275.00222 * 4 2 1 6 6 H 1.09004 * 110.43344 * 36.08696 * 5 4 2 7 7 C 1.51281 * 110.48489 * 273.55069 * 5 4 2 8 8 O 1.21281 * 124.94649 * 77.46276 * 7 5 4 9 9 N 1.34422 * 110.10889 * 257.43819 * 7 5 4 10 10 C 1.46761 * 111.30584 * 0.40847 * 9 7 5 11 11 C 1.54476 * 105.47093 * 342.98672 * 10 9 7 12 12 C 1.53002 * 110.97156 * 143.53321 * 11 10 9 13 13 C 1.53002 * 110.96592 * 267.29454 * 11 10 9 14 14 C 1.50693 * 109.47161 * 240.00011 * 2 1 3 15 15 O 1.21283 * 119.99782 * 254.32538 * 14 2 1 16 16 N 1.34780 * 120.00211 * 74.33161 * 14 2 1 17 17 C 1.46497 * 120.00137 * 3.60187 * 16 14 2 18 18 C 1.46499 * 120.00049 * 183.60345 * 16 14 2 19 19 C 1.50701 * 109.46981 * 89.99708 * 18 16 14 20 20 H 1.07993 * 120.00389 * 359.97438 * 19 18 16 21 21 C 1.37885 * 119.99895 * 179.97438 * 19 18 16 22 22 N 1.31510 * 119.99724 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99843 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46934 * 90.00499 * 23 21 19 25 25 H 1.48506 * 109.47005 * 210.00133 * 23 21 19 26 26 H 1.48497 * 109.47396 * 330.00016 * 23 21 19 27 27 H 1.09001 * 109.47435 * 296.04092 * 1 2 3 28 28 H 1.09000 * 109.47349 * 56.04253 * 1 2 3 29 29 H 1.09004 * 109.46834 * 176.04073 * 1 2 3 30 30 H 1.00902 * 110.99723 * 151.04807 * 4 2 1 31 31 H 0.96999 * 124.34657 * 180.38946 * 9 7 5 32 32 H 1.09001 * 110.24617 * 101.98127 * 10 9 7 33 33 H 1.08998 * 110.24925 * 223.98098 * 10 9 7 34 34 H 1.08996 * 109.46912 * 61.45208 * 12 11 10 35 35 H 1.08998 * 109.47190 * 181.44757 * 12 11 10 36 36 H 1.08996 * 109.47081 * 301.45118 * 12 11 10 37 37 H 1.08999 * 109.47575 * 58.54873 * 13 11 10 38 38 H 1.09009 * 109.47258 * 178.54976 * 13 11 10 39 39 H 1.08999 * 109.47162 * 298.54670 * 13 11 10 40 40 H 1.09001 * 109.46863 * 84.66081 * 17 16 14 41 41 H 1.08998 * 109.47293 * 204.66153 * 17 16 14 42 42 H 1.08998 * 109.46785 * 324.66388 * 17 16 14 43 43 H 1.08993 * 109.47398 * 209.99873 * 18 16 14 44 44 H 1.09001 * 109.47060 * 330.00337 * 18 16 14 45 45 H 0.97007 * 119.99774 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2228 2.3469 6 1 1.2524 0.9287 2.3165 7 6 3.4036 0.9595 2.3649 8 8 3.6845 1.8997 1.6521 9 7 4.2208 0.4207 3.2862 10 6 3.5812 -0.7089 3.9709 11 6 2.0715 -0.5687 3.6752 12 6 1.4200 -1.9406 3.4897 13 6 1.3687 0.2241 4.7791 14 6 2.0323 -0.7104 -1.2304 15 8 2.5020 -1.8247 -1.1379 16 7 1.9598 -0.1073 -2.4336 17 6 1.4660 1.2682 -2.5350 18 6 2.3747 -0.8274 -3.6400 19 6 1.1926 -1.5619 -4.2182 20 1 0.2288 -1.4990 -3.7350 21 6 1.3416 -2.3142 -5.3640 22 7 2.5153 -2.3912 -5.9521 23 14 -0.1236 -3.2252 -6.0802 24 1 -0.8287 -2.3460 -7.0471 25 1 0.3470 -4.4496 -6.7766 26 1 -1.0536 -3.6045 -4.9864 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0710 30 1 2.9174 -1.1204 1.0288 31 1 5.1180 0.7376 3.4742 32 1 3.9571 -1.6521 3.5744 33 1 3.7623 -0.6512 5.0441 34 1 1.5226 -2.5186 4.4081 35 1 0.3628 -1.8124 3.2574 36 1 1.9105 -2.4681 2.6717 37 1 1.8232 1.2112 4.8632 38 1 0.3119 0.3304 4.5337 39 1 1.4702 -0.3045 5.7269 40 1 2.2846 1.9628 -2.3469 41 1 1.0675 1.4384 -3.5351 42 1 0.6785 1.4266 -1.7983 43 1 2.7557 -0.1174 -4.3740 44 1 3.1574 -1.5421 -3.3855 45 1 2.6202 -2.9208 -6.7580 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931666334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:47 Heat of formation + Delta-G solvation = -63.966568 kcal Electronic energy + Delta-G solvation = -25520.404243 eV Core-core repulsion = 21958.999705 eV Total energy + Delta-G solvation = -3561.404538 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09056 -39.14594 -37.26174 -35.40315 -34.75864 -33.35863 -32.56277 -30.31988 -27.68725 -27.65658 -26.49875 -26.01097 -25.78986 -23.73359 -21.75013 -20.56634 -19.76213 -18.45936 -17.40783 -16.67600 -16.48737 -16.27126 -15.75578 -15.23433 -14.72298 -14.60846 -14.56872 -14.11002 -13.93518 -13.84568 -13.59928 -13.17915 -12.67690 -12.40308 -12.38902 -12.22303 -12.09866 -11.98299 -11.81228 -11.54355 -11.47435 -11.27924 -11.14444 -11.10880 -10.86839 -10.82840 -10.54110 -10.31457 -10.13271 -9.60191 -9.32075 -8.81872 -8.42994 -8.40108 -7.60739 -6.02121 -4.06982 2.36896 3.14925 3.31641 3.37266 3.39615 3.45240 3.72286 4.05006 4.12598 4.32139 4.46962 4.54873 4.70763 5.03752 5.06647 5.17186 5.22879 5.31934 5.36529 5.38993 5.48118 5.49239 5.63291 5.67310 5.78109 5.86638 5.88633 5.96602 6.00162 6.02258 6.23078 6.41404 6.47775 6.55758 6.75606 6.80372 7.11281 7.22691 7.46798 7.56721 7.94308 8.05066 8.25464 8.43369 8.91372 9.09168 9.57969 11.05959 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.003756 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.082852 B = 7452.329218 C = 7762.293267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.073 0.927 4 N -0.634 5.634 5 C 0.062 3.938 6 H 0.112 0.888 7 C 0.486 3.514 8 O -0.530 6.530 9 N -0.730 5.730 10 C 0.104 3.896 11 C -0.069 4.069 12 C -0.121 4.121 13 C -0.137 4.137 14 C 0.506 3.494 15 O -0.536 6.536 16 N -0.598 5.598 17 C 0.075 3.925 18 C 0.245 3.755 19 C -0.525 4.525 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.355 0.645 31 H 0.407 0.593 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.044 0.956 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 6.493 22.252 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 H 0.091 0.909 4 N -0.268 5.268 5 C -0.052 4.052 6 H 0.130 0.870 7 C 0.270 3.730 8 O -0.404 6.404 9 N -0.386 5.386 10 C -0.020 4.020 11 C -0.070 4.070 12 C -0.178 4.178 13 C -0.195 4.195 14 C 0.291 3.709 15 O -0.413 6.413 16 N -0.329 5.329 17 C -0.069 4.069 18 C 0.126 3.874 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.246 0.754 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.099 6.023 21.841 22.753 hybrid contribution 0.509 0.256 -0.647 0.862 sum -1.590 6.279 21.194 22.162 Atomic orbital electron populations 1.21759 0.92237 1.03493 1.01660 1.21632 0.97618 0.97173 0.89001 0.90923 1.60641 1.34369 1.28868 1.02926 1.22552 0.95319 0.94301 0.92979 0.86964 1.22086 0.88623 0.83069 0.79244 1.90763 1.79414 1.27678 1.42576 1.46252 1.18181 1.34412 1.39748 1.22339 0.92562 0.89467 0.97635 1.21558 0.93971 0.97906 0.93566 1.21553 1.01461 0.93316 1.01485 1.21811 1.00737 0.99492 0.97419 1.20180 0.79690 0.86525 0.84466 1.90657 1.45816 1.19217 1.85628 1.48083 1.62926 1.13837 1.08093 1.21824 0.98446 0.83375 1.03210 1.19307 0.96343 0.91991 0.79790 1.21435 0.95866 1.29701 1.09427 0.92391 1.24944 0.96068 0.96364 0.96760 1.69940 1.22612 1.40914 1.19940 0.86488 0.82532 0.79303 0.79052 1.20662 1.21107 1.19847 0.92195 0.91355 0.91192 0.82323 0.75444 0.90502 0.90191 0.93221 0.91741 0.90472 0.92752 0.91616 0.91717 0.93725 0.90514 0.91964 0.95012 0.93836 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.15 37.16 0.34 -1.51 16 2 C 0.06 0.94 2.05 -68.87 -0.14 0.80 16 3 H 0.07 1.17 6.58 -51.93 -0.34 0.82 16 4 N -0.63 -8.94 4.16 -100.97 -0.42 -9.36 16 5 C 0.06 0.71 2.43 -67.73 -0.16 0.54 16 6 H 0.11 1.22 6.95 -51.93 -0.36 0.86 16 7 C 0.49 6.39 7.66 -10.86 -0.08 6.30 16 8 O -0.53 -9.17 17.52 5.56 0.10 -9.07 16 9 N -0.73 -7.01 6.24 -59.21 -0.37 -7.38 16 10 C 0.10 0.77 6.90 -3.13 -0.02 0.75 16 11 C -0.07 -0.56 0.98 -152.88 -0.15 -0.71 16 12 C -0.12 -1.03 8.04 37.16 0.30 -0.73 16 13 C -0.14 -0.88 8.49 37.16 0.32 -0.57 16 14 C 0.51 10.87 6.85 -10.99 -0.08 10.79 16 15 O -0.54 -13.55 15.47 5.55 0.09 -13.47 16 16 N -0.60 -13.21 2.86 -182.96 -0.52 -13.74 16 17 C 0.08 1.29 9.85 59.85 0.59 1.88 16 18 C 0.24 6.59 5.16 -5.19 -0.03 6.57 16 19 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 23 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H 0.06 0.66 7.41 -51.93 -0.38 0.28 16 28 H 0.07 0.92 5.84 -51.93 -0.30 0.62 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.36 5.68 7.46 -39.29 -0.29 5.39 16 31 H 0.41 3.33 8.96 -40.82 -0.37 2.96 16 32 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 33 H 0.08 0.41 7.91 -51.93 -0.41 0.00 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.82 7.15 -51.93 -0.37 0.45 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.31 8.03 -51.93 -0.42 0.90 16 42 H 0.06 0.90 4.59 -51.93 -0.24 0.66 16 43 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 44 H 0.04 1.32 7.37 -51.93 -0.38 0.94 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -35.10 360.13 -6.73 -41.83 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.20 Total: 4.63 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 0.46 Total: 10.35 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.58 Total: -56.70 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.18 Total: -22.54 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.10 -6.73 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931666334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.142 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds