Wall clock time and date at job start Tue Mar 31 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46805 * 2 1 4 4 N 1.46901 * 109.47191 * 119.99419 * 2 1 3 5 5 C 1.46901 * 111.00286 * 275.00222 * 4 2 1 6 6 H 1.09004 * 110.43344 * 36.08696 * 5 4 2 7 7 C 1.51281 * 110.48489 * 273.55069 * 5 4 2 8 8 O 1.21281 * 124.94649 * 77.46276 * 7 5 4 9 9 N 1.34422 * 110.10889 * 257.43819 * 7 5 4 10 10 C 1.46761 * 111.30584 * 0.40847 * 9 7 5 11 11 C 1.54476 * 105.47093 * 342.98672 * 10 9 7 12 12 C 1.53002 * 110.97156 * 143.53321 * 11 10 9 13 13 C 1.53002 * 110.96592 * 267.29454 * 11 10 9 14 14 C 1.50693 * 109.47161 * 240.00011 * 2 1 3 15 15 O 1.21283 * 119.99782 * 254.32538 * 14 2 1 16 16 N 1.34780 * 120.00211 * 74.33161 * 14 2 1 17 17 C 1.46497 * 120.00137 * 3.60187 * 16 14 2 18 18 C 1.46499 * 120.00049 * 183.60345 * 16 14 2 19 19 C 1.50701 * 109.46981 * 89.99708 * 18 16 14 20 20 H 1.07993 * 120.00389 * 359.97438 * 19 18 16 21 21 C 1.37885 * 119.99895 * 179.97438 * 19 18 16 22 22 N 1.31510 * 119.99724 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99843 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46934 * 90.00499 * 23 21 19 25 25 H 1.48506 * 109.47005 * 210.00133 * 23 21 19 26 26 H 1.48497 * 109.47396 * 330.00016 * 23 21 19 27 27 H 1.09001 * 109.47435 * 296.04092 * 1 2 3 28 28 H 1.09000 * 109.47349 * 56.04253 * 1 2 3 29 29 H 1.09004 * 109.46834 * 176.04073 * 1 2 3 30 30 H 1.00902 * 110.99723 * 151.04807 * 4 2 1 31 31 H 0.96999 * 124.34657 * 180.38946 * 9 7 5 32 32 H 1.09001 * 110.24617 * 101.98127 * 10 9 7 33 33 H 1.08998 * 110.24925 * 223.98098 * 10 9 7 34 34 H 1.08996 * 109.46912 * 61.45208 * 12 11 10 35 35 H 1.08998 * 109.47190 * 181.44757 * 12 11 10 36 36 H 1.08996 * 109.47081 * 301.45118 * 12 11 10 37 37 H 1.08999 * 109.47575 * 58.54873 * 13 11 10 38 38 H 1.09009 * 109.47258 * 178.54976 * 13 11 10 39 39 H 1.08999 * 109.47162 * 298.54670 * 13 11 10 40 40 H 1.09001 * 109.46863 * 84.66081 * 17 16 14 41 41 H 1.08998 * 109.47293 * 204.66153 * 17 16 14 42 42 H 1.08998 * 109.46785 * 324.66388 * 17 16 14 43 43 H 1.08993 * 109.47398 * 209.99873 * 18 16 14 44 44 H 1.09001 * 109.47060 * 330.00337 * 18 16 14 45 45 H 0.97007 * 119.99774 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2228 2.3469 6 1 1.2524 0.9287 2.3165 7 6 3.4036 0.9595 2.3649 8 8 3.6845 1.8997 1.6521 9 7 4.2208 0.4207 3.2862 10 6 3.5812 -0.7089 3.9709 11 6 2.0715 -0.5687 3.6752 12 6 1.4200 -1.9406 3.4897 13 6 1.3687 0.2241 4.7791 14 6 2.0323 -0.7104 -1.2304 15 8 2.5020 -1.8247 -1.1379 16 7 1.9598 -0.1073 -2.4336 17 6 1.4660 1.2682 -2.5350 18 6 2.3747 -0.8274 -3.6400 19 6 1.1926 -1.5619 -4.2182 20 1 0.2288 -1.4990 -3.7350 21 6 1.3416 -2.3142 -5.3640 22 7 2.5153 -2.3912 -5.9521 23 14 -0.1236 -3.2252 -6.0802 24 1 -0.8287 -2.3460 -7.0471 25 1 0.3470 -4.4496 -6.7766 26 1 -1.0536 -3.6045 -4.9864 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0710 30 1 2.9174 -1.1204 1.0288 31 1 5.1180 0.7376 3.4742 32 1 3.9571 -1.6521 3.5744 33 1 3.7623 -0.6512 5.0441 34 1 1.5226 -2.5186 4.4081 35 1 0.3628 -1.8124 3.2574 36 1 1.9105 -2.4681 2.6717 37 1 1.8232 1.2112 4.8632 38 1 0.3119 0.3304 4.5337 39 1 1.4702 -0.3045 5.7269 40 1 2.2846 1.9628 -2.3469 41 1 1.0675 1.4384 -3.5351 42 1 0.6785 1.4266 -1.7983 43 1 2.7557 -0.1174 -4.3740 44 1 3.1574 -1.5421 -3.3855 45 1 2.6202 -2.9208 -6.7580 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931666334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:47 Heat of formation + Delta-G solvation = -91.515905 kcal Electronic energy + Delta-G solvation = -25521.598872 eV Core-core repulsion = 21958.999705 eV Total energy + Delta-G solvation = -3562.599167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03547 -40.76959 -38.25454 -36.81781 -36.41842 -34.75370 -34.12711 -31.54901 -29.60656 -28.33145 -27.63693 -27.20228 -26.67337 -25.58716 -23.34295 -21.52980 -20.60160 -19.95648 -18.68991 -18.38373 -18.06199 -17.61813 -16.80429 -16.78867 -16.21319 -16.14554 -15.60921 -15.37613 -15.03441 -14.86203 -14.54874 -14.41173 -14.11405 -13.96125 -13.59527 -13.49304 -13.25709 -13.17190 -13.04183 -12.88096 -12.72739 -12.68900 -12.60104 -12.36393 -12.22658 -12.17347 -11.80513 -11.71255 -11.62574 -11.31301 -10.65184 -10.55296 -10.14633 -9.54850 -9.44793 -8.23187 -6.38631 1.34715 1.37073 1.40304 1.50819 1.72841 2.21004 2.35796 2.41337 2.94412 3.06415 3.27485 3.45055 3.55073 3.86963 4.00050 4.09322 4.20944 4.31897 4.39255 4.45534 4.60343 4.66542 4.72067 4.81404 4.83152 4.90886 4.95977 4.97857 5.11140 5.18682 5.20382 5.25188 5.32512 5.41782 5.52466 5.66214 5.71595 5.76437 5.82817 5.93267 6.00058 6.03525 6.66082 6.72919 7.12791 7.24513 7.39919 8.84366 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.003756 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.082852 B = 7452.329218 C = 7762.293267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.631 5.631 5 C 0.061 3.939 6 H 0.122 0.878 7 C 0.477 3.523 8 O -0.580 6.580 9 N -0.717 5.717 10 C 0.101 3.899 11 C -0.059 4.059 12 C -0.116 4.116 13 C -0.132 4.132 14 C 0.495 3.505 15 O -0.585 6.585 16 N -0.606 5.606 17 C 0.072 3.928 18 C 0.259 3.741 19 C -0.542 4.542 20 H 0.057 0.943 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.972 3.028 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.270 1.270 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.342 0.658 31 H 0.414 0.586 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.021 0.979 44 H -0.003 1.003 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 6.900 24.500 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.039 4.039 3 H 0.095 0.905 4 N -0.264 5.264 5 C -0.052 4.052 6 H 0.139 0.861 7 C 0.261 3.739 8 O -0.459 6.459 9 N -0.372 5.372 10 C -0.023 4.023 11 C -0.060 4.060 12 C -0.174 4.174 13 C -0.190 4.190 14 C 0.283 3.717 15 O -0.465 6.465 16 N -0.337 5.337 17 C -0.070 4.070 18 C 0.138 3.862 19 C -0.580 4.580 20 H 0.075 0.925 21 C -0.192 4.192 22 N -0.570 5.570 23 Si 0.796 3.204 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.195 1.195 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.162 0.838 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.039 0.961 44 H 0.015 0.985 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.137 6.454 24.143 25.331 hybrid contribution 1.233 0.119 -1.282 1.782 sum -2.904 6.573 22.862 23.965 Atomic orbital electron populations 1.21762 0.90037 1.02908 1.03818 1.21558 0.99009 0.96367 0.86975 0.90453 1.60763 1.33502 1.29289 1.02845 1.22740 0.94779 0.94378 0.93345 0.86069 1.22418 0.89683 0.82656 0.79157 1.90729 1.80481 1.30060 1.44679 1.46293 1.18236 1.34126 1.38531 1.22579 0.91838 0.88476 0.99365 1.21581 0.94727 0.97482 0.92252 1.21497 1.00834 0.93448 1.01634 1.21801 1.00628 0.99169 0.97395 1.21206 0.78559 0.86232 0.85666 1.90618 1.47778 1.21602 1.86509 1.48111 1.63038 1.15499 1.07064 1.22074 0.99916 0.80721 1.04316 1.18786 0.94886 0.91147 0.81398 1.21679 0.96069 1.30392 1.09895 0.92500 1.25911 0.99189 0.97063 0.97076 1.70069 1.24870 1.41613 1.20436 0.85354 0.78658 0.78041 0.78390 1.18788 1.20652 1.19471 0.88610 0.90774 0.92893 0.83805 0.74618 0.90516 0.86751 0.90905 0.92103 0.93083 0.93046 0.91178 0.89582 0.92199 0.90636 0.88689 0.96138 0.98497 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.15 71.98 0.66 -2.63 16 2 C 0.07 2.33 2.05 44.17 0.09 2.42 16 3 H 0.08 2.41 6.58 -2.38 -0.02 2.40 16 4 N -0.63 -17.64 4.16 -473.35 -1.97 -19.61 16 5 C 0.06 1.29 2.43 44.91 0.11 1.39 16 6 H 0.12 2.34 6.95 -2.38 -0.02 2.32 16 7 C 0.48 12.18 7.66 87.90 0.67 12.86 16 8 O -0.58 -20.21 17.52 -3.03 -0.05 -20.26 16 9 N -0.72 -12.76 6.24 -459.81 -2.87 -15.63 16 10 C 0.10 1.23 6.90 86.83 0.60 1.83 16 11 C -0.06 -0.82 0.98 -51.13 -0.05 -0.87 16 12 C -0.12 -1.74 8.04 71.98 0.58 -1.16 16 13 C -0.13 -1.22 8.49 71.98 0.61 -0.61 16 14 C 0.50 21.93 6.85 87.65 0.60 22.53 16 15 O -0.58 -31.12 15.47 -3.04 -0.05 -31.17 16 16 N -0.61 -27.56 2.86 -851.16 -2.43 -29.99 16 17 C 0.07 2.42 9.85 127.77 1.26 3.68 16 18 C 0.26 14.65 5.16 85.63 0.44 15.09 16 19 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 20 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 21 C 0.01 0.38 5.46 84.66 0.46 0.84 16 22 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 23 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 H 0.10 1.80 7.41 -2.39 -0.02 1.78 16 28 H 0.07 1.82 5.84 -2.39 -0.01 1.81 16 29 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.34 11.27 7.46 -89.69 -0.67 10.60 16 31 H 0.41 6.24 8.96 -92.71 -0.83 5.41 16 32 H 0.08 1.00 7.89 -2.39 -0.02 0.98 16 33 H 0.11 0.70 7.91 -2.39 -0.02 0.68 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 1.05 7.15 -2.39 -0.02 1.03 16 37 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 42 H 0.09 2.56 4.59 -2.39 -0.01 2.55 16 43 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 44 H 0.00 -0.20 7.37 -2.39 -0.02 -0.22 16 45 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -80.46 360.13 0.72 -79.73 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.49 Total: 22.96 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.27 Total: 23.70 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -6.98 Total: -122.37 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.10 Total: -51.43 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -80.46 0.72 -79.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931666334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.784 kcal (2) G-P(sol) polarization free energy of solvation -80.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds