Wall clock time and date at job start Tue Mar 31 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47014 * 2 1 4 4 C 1.47012 * 110.99845 * 313.63498 * 3 2 1 5 5 C 1.53103 * 109.25755 * 177.60782 * 4 3 2 6 6 O 1.43017 * 109.25577 * 56.84679 * 5 4 3 7 7 C 1.43013 * 113.74214 * 301.32934 * 6 5 4 8 8 C 1.47014 * 110.99868 * 190.00241 * 3 2 1 9 9 H 1.08998 * 109.50859 * 62.45726 * 8 3 2 10 10 C 1.50703 * 109.54154 * 302.34450 * 8 3 2 11 11 O 1.21286 * 119.99880 * 340.31325 * 10 8 3 12 12 N 1.34772 * 120.00316 * 160.30639 * 10 8 3 13 13 C 1.46961 * 120.59833 * 185.45463 * 12 10 8 14 14 C 1.53805 * 108.40312 * 124.75864 * 13 12 10 15 15 N 1.46967 * 108.57872 * 49.63499 * 14 13 12 16 16 C 1.36942 * 120.59477 * 124.66994 * 15 14 13 17 17 H 1.07997 * 119.99563 * 330.65156 * 16 15 14 18 18 C 1.38813 * 119.99928 * 150.64547 * 16 15 14 19 19 N 1.31613 * 119.99701 * 167.18118 * 18 16 15 20 20 Si 1.86802 * 120.00112 * 347.18108 * 18 16 15 21 21 H 1.48501 * 109.46859 * 95.24206 * 20 18 16 22 22 H 1.48494 * 109.47116 * 215.24297 * 20 18 16 23 23 H 1.48499 * 109.47121 * 335.24664 * 20 18 16 24 24 C 1.46964 * 118.81512 * 304.64804 * 15 14 13 25 25 C 1.46967 * 120.59003 * 5.73159 * 12 10 8 26 26 H 1.09000 * 109.47477 * 299.99977 * 1 2 3 27 27 H 1.09002 * 109.46946 * 60.00526 * 1 2 3 28 28 H 1.09000 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47022 * 240.00294 * 2 1 3 30 30 H 1.08997 * 109.47221 * 120.00128 * 2 1 3 31 31 H 1.09002 * 109.50672 * 297.54213 * 4 3 2 32 32 H 1.09003 * 109.50876 * 57.67302 * 4 3 2 33 33 H 1.08994 * 109.50384 * 296.91397 * 5 4 3 34 34 H 1.08996 * 109.50624 * 176.78351 * 5 4 3 35 35 H 1.08995 * 109.51122 * 178.60444 * 7 6 5 36 36 H 1.09002 * 109.50468 * 298.74250 * 7 6 5 37 37 H 1.09002 * 109.61092 * 244.54206 * 13 12 10 38 38 H 1.08999 * 109.61040 * 5.04924 * 13 12 10 39 39 H 1.09004 * 109.74129 * 289.85342 * 14 13 12 40 40 H 1.08996 * 109.53919 * 169.30446 * 14 13 12 41 41 H 0.97005 * 119.99882 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.61088 * 295.48524 * 24 15 14 43 43 H 1.08995 * 109.75407 * 175.05333 * 24 15 14 44 44 H 1.08996 * 109.61033 * 354.95205 * 25 12 10 45 45 H 1.09001 * 109.61036 * 115.45573 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3023 2.1974 -0.9933 5 6 1.8008 3.6431 -0.9184 6 8 3.2163 3.6650 -1.1213 7 6 3.9464 2.8845 -0.1709 8 6 3.4696 1.4312 -0.2384 9 1 3.6897 1.0213 -1.2241 10 6 4.1796 0.6194 0.8142 11 8 3.6203 0.3580 1.8582 12 7 5.4361 0.1837 0.5955 13 6 6.0972 -0.7074 1.5592 14 6 6.5631 -1.9692 0.8132 15 7 7.2989 -1.5568 -0.3903 16 6 8.5756 -1.9994 -0.6126 17 1 9.2194 -2.2321 0.2227 18 6 9.0421 -2.1489 -1.9114 19 7 10.3273 -2.3267 -2.1326 20 14 7.8458 -2.0979 -3.3452 21 1 7.8000 -0.7224 -3.9029 22 1 8.2943 -3.0443 -4.3980 23 1 6.4920 -2.4864 -2.8744 24 6 6.6398 -0.6612 -1.3513 25 6 6.1719 0.5961 -0.6080 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.4878 1.7997 -1.9911 32 1 0.2332 2.1697 -0.7827 33 1 1.5672 4.0582 0.0620 34 1 1.3130 4.2368 -1.6914 35 1 5.0103 2.9296 -0.4034 36 1 3.7751 3.2776 0.8312 37 1 6.9567 -0.1997 1.9969 38 1 5.3935 -0.9837 2.3444 39 1 5.6984 -2.5676 0.5262 40 1 7.2175 -2.5540 1.4596 41 1 10.6532 -2.4316 -3.0402 42 1 5.7806 -1.1665 -1.7924 43 1 7.3425 -0.3819 -2.1363 44 1 5.5175 1.1809 -1.2544 45 1 7.0365 1.1946 -0.3211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949002450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:09 Heat of formation + Delta-G solvation = -20.358962 kcal Electronic energy + Delta-G solvation = -26185.616972 eV Core-core repulsion = 22626.103402 eV Total energy + Delta-G solvation = -3559.513570 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75036 -38.95719 -37.21883 -36.17251 -34.09981 -32.39725 -31.37712 -30.88686 -30.62045 -27.48304 -26.80330 -25.04491 -23.53024 -23.35227 -22.33225 -21.33748 -20.19200 -18.90336 -17.57687 -16.79123 -16.60864 -16.30665 -15.75678 -15.53310 -15.27241 -14.92498 -14.66483 -14.38718 -14.35082 -14.15924 -13.88405 -13.55575 -13.05232 -12.86143 -12.66286 -12.36409 -12.14749 -12.05141 -12.00459 -11.76041 -11.58565 -11.23761 -11.19801 -10.93791 -10.78585 -10.46306 -10.25077 -10.12690 -10.00728 -9.57415 -9.41293 -8.95868 -8.52222 -8.38895 -7.03890 -6.03212 -3.46757 2.66642 3.01195 3.19363 3.36603 3.39706 3.50452 3.73551 4.39991 4.49554 4.59441 4.71552 4.74817 4.86037 4.88633 4.96484 5.09342 5.18256 5.23965 5.29732 5.32155 5.37410 5.47666 5.48615 5.53619 5.62692 5.70606 5.72181 5.76336 5.94762 5.95132 5.99386 6.00312 6.10088 6.28578 6.40689 6.61186 6.65255 6.78854 6.80573 6.87273 7.62429 7.83672 8.22800 8.33257 8.79644 9.58900 9.94740 11.12559 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.004735 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.044307 B = 5912.313830 C = 6208.310638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 N -0.513 5.513 4 C 0.012 3.988 5 C 0.060 3.940 6 O -0.378 6.378 7 C 0.075 3.925 8 C 0.030 3.970 9 H 0.073 0.927 10 C 0.519 3.481 11 O -0.531 6.531 12 N -0.598 5.598 13 C 0.095 3.905 14 C 0.137 3.863 15 N -0.605 5.605 16 C -0.264 4.264 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.911 5.911 20 Si 0.887 3.113 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.267 1.267 24 C 0.112 3.888 25 C 0.082 3.918 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.028 0.972 40 H 0.077 0.923 41 H 0.264 0.736 42 H 0.034 0.966 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 9.672 2.157 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 N -0.240 5.240 4 C -0.116 4.116 5 C -0.017 4.017 6 O -0.297 6.297 7 C -0.002 4.002 8 C -0.082 4.082 9 H 0.090 0.910 10 C 0.305 3.695 11 O -0.407 6.407 12 N -0.331 5.331 13 C -0.028 4.028 14 C 0.010 3.990 15 N -0.329 5.329 16 C -0.392 4.392 17 H 0.107 0.893 18 C -0.175 4.175 19 N -0.554 5.554 20 Si 0.719 3.281 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.192 1.192 24 C -0.015 4.015 25 C -0.042 4.042 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.829 9.766 2.919 20.537 hybrid contribution -0.401 -0.553 -1.700 1.832 sum -18.230 9.213 1.219 20.463 Atomic orbital electron populations 1.21894 0.94801 1.02030 1.02128 1.22284 0.95796 0.88307 1.02005 1.62057 1.01326 1.12223 1.48364 1.22948 1.00037 0.94486 0.94097 1.22736 0.81414 0.95300 1.02215 1.88022 1.18229 1.69535 1.53866 1.22621 0.96527 0.87129 0.93949 1.22336 0.89887 0.98023 0.97955 0.90954 1.20055 0.81464 0.80230 0.87739 1.90645 1.65714 1.57747 1.26611 1.48046 1.13621 1.47970 1.23494 1.22346 0.96882 0.92016 0.91589 1.21401 0.95365 0.93083 0.89107 1.44254 1.14120 1.52517 1.22049 1.18965 0.86517 1.40285 0.93426 0.89341 1.25326 0.95852 0.98832 0.97501 1.69751 1.12213 1.52573 1.20850 0.86939 0.82041 0.76553 0.82617 1.21606 1.23103 1.19210 1.21815 0.96689 0.89837 0.93141 1.22552 0.96304 0.98939 0.86419 0.91635 0.92692 0.92027 0.95175 0.88671 0.93877 0.88604 0.92021 0.88247 0.87593 0.91436 0.91282 0.89567 0.95423 0.90427 0.92605 0.94802 0.90192 0.90595 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.18 37.16 0.34 -1.12 16 2 C 0.04 0.55 5.35 -3.82 -0.02 0.53 16 3 N -0.51 -6.61 4.42 -227.72 -1.01 -7.62 16 4 C 0.01 0.12 4.94 -3.71 -0.02 0.11 16 5 C 0.06 0.58 7.01 37.21 0.26 0.84 16 6 O -0.38 -4.62 10.83 -35.23 -0.38 -5.00 16 7 C 0.08 0.93 6.01 37.21 0.22 1.16 16 8 C 0.03 0.41 1.48 -68.75 -0.10 0.31 16 9 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16 10 C 0.52 8.38 6.25 -10.99 -0.07 8.31 16 11 O -0.53 -9.82 14.21 5.55 0.08 -9.74 16 12 N -0.60 -9.87 2.94 -172.22 -0.51 -10.38 16 13 C 0.10 1.60 6.61 -3.37 -0.02 1.58 16 14 C 0.14 2.61 6.69 -3.37 -0.02 2.59 16 15 N -0.61 -13.68 2.76 -171.77 -0.47 -14.16 16 16 C -0.26 -7.06 10.09 -15.06 -0.15 -7.21 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 18 C 0.02 0.67 5.37 -17.43 -0.09 0.57 16 19 N -0.91 -27.19 13.97 55.49 0.78 -26.42 16 20 Si 0.89 21.52 24.31 -169.99 -4.13 17.39 16 21 H -0.29 -6.67 6.79 56.52 0.38 -6.29 16 22 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.27 -6.31 5.81 56.52 0.33 -5.98 16 24 C 0.11 2.27 4.27 -3.59 -0.02 2.26 16 25 C 0.08 1.34 5.79 -3.59 -0.02 1.32 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.46 6.28 -51.93 -0.33 0.13 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.10 1.44 6.22 -51.93 -0.32 1.12 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.79 6.05 -51.93 -0.31 0.48 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.22 6.66 -51.93 -0.35 0.87 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.41 7.02 -51.93 -0.36 1.04 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.44 7.93 -51.93 -0.41 1.02 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.03 0.70 6.73 -51.93 -0.35 0.35 16 43 H 0.08 1.75 4.14 -51.93 -0.22 1.54 16 44 H 0.08 1.05 4.78 -51.93 -0.25 0.80 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -31.49 332.59 -7.47 -38.96 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.13 Total: 0.71 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 0.29 Total: 11.24 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -1.21 Total: -58.58 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.30 Total: -14.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.13 Total: 17.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.49 -7.47 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949002450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.600 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds