Wall clock time and date at job start Tue Mar 31 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47014 * 2 1 4 4 C 1.47012 * 110.99845 * 313.63498 * 3 2 1 5 5 C 1.53103 * 109.25755 * 177.60782 * 4 3 2 6 6 O 1.43017 * 109.25577 * 56.84679 * 5 4 3 7 7 C 1.43013 * 113.74214 * 301.32934 * 6 5 4 8 8 C 1.47014 * 110.99868 * 190.00241 * 3 2 1 9 9 H 1.08998 * 109.50859 * 62.45726 * 8 3 2 10 10 C 1.50703 * 109.54154 * 302.34450 * 8 3 2 11 11 O 1.21286 * 119.99880 * 340.31325 * 10 8 3 12 12 N 1.34772 * 120.00316 * 160.30639 * 10 8 3 13 13 C 1.46961 * 120.59833 * 185.45463 * 12 10 8 14 14 C 1.53805 * 108.40312 * 124.75864 * 13 12 10 15 15 N 1.46967 * 108.57872 * 49.63499 * 14 13 12 16 16 C 1.36942 * 120.59477 * 124.66994 * 15 14 13 17 17 H 1.07997 * 119.99563 * 330.65156 * 16 15 14 18 18 C 1.38813 * 119.99928 * 150.64547 * 16 15 14 19 19 N 1.31613 * 119.99701 * 167.18118 * 18 16 15 20 20 Si 1.86802 * 120.00112 * 347.18108 * 18 16 15 21 21 H 1.48501 * 109.46859 * 95.24206 * 20 18 16 22 22 H 1.48494 * 109.47116 * 215.24297 * 20 18 16 23 23 H 1.48499 * 109.47121 * 335.24664 * 20 18 16 24 24 C 1.46964 * 118.81512 * 304.64804 * 15 14 13 25 25 C 1.46967 * 120.59003 * 5.73159 * 12 10 8 26 26 H 1.09000 * 109.47477 * 299.99977 * 1 2 3 27 27 H 1.09002 * 109.46946 * 60.00526 * 1 2 3 28 28 H 1.09000 * 109.47029 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47022 * 240.00294 * 2 1 3 30 30 H 1.08997 * 109.47221 * 120.00128 * 2 1 3 31 31 H 1.09002 * 109.50672 * 297.54213 * 4 3 2 32 32 H 1.09003 * 109.50876 * 57.67302 * 4 3 2 33 33 H 1.08994 * 109.50384 * 296.91397 * 5 4 3 34 34 H 1.08996 * 109.50624 * 176.78351 * 5 4 3 35 35 H 1.08995 * 109.51122 * 178.60444 * 7 6 5 36 36 H 1.09002 * 109.50468 * 298.74250 * 7 6 5 37 37 H 1.09002 * 109.61092 * 244.54206 * 13 12 10 38 38 H 1.08999 * 109.61040 * 5.04924 * 13 12 10 39 39 H 1.09004 * 109.74129 * 289.85342 * 14 13 12 40 40 H 1.08996 * 109.53919 * 169.30446 * 14 13 12 41 41 H 0.97005 * 119.99882 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.61088 * 295.48524 * 24 15 14 43 43 H 1.08995 * 109.75407 * 175.05333 * 24 15 14 44 44 H 1.08996 * 109.61033 * 354.95205 * 25 12 10 45 45 H 1.09001 * 109.61036 * 115.45573 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3023 2.1974 -0.9933 5 6 1.8008 3.6431 -0.9184 6 8 3.2163 3.6650 -1.1213 7 6 3.9464 2.8845 -0.1709 8 6 3.4696 1.4312 -0.2384 9 1 3.6897 1.0213 -1.2241 10 6 4.1796 0.6194 0.8142 11 8 3.6203 0.3580 1.8582 12 7 5.4361 0.1837 0.5955 13 6 6.0972 -0.7074 1.5592 14 6 6.5631 -1.9692 0.8132 15 7 7.2989 -1.5568 -0.3903 16 6 8.5756 -1.9994 -0.6126 17 1 9.2194 -2.2321 0.2227 18 6 9.0421 -2.1489 -1.9114 19 7 10.3273 -2.3267 -2.1326 20 14 7.8458 -2.0979 -3.3452 21 1 7.8000 -0.7224 -3.9029 22 1 8.2943 -3.0443 -4.3980 23 1 6.4920 -2.4864 -2.8744 24 6 6.6398 -0.6612 -1.3513 25 6 6.1719 0.5961 -0.6080 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.4878 1.7997 -1.9911 32 1 0.2332 2.1697 -0.7827 33 1 1.5672 4.0582 0.0620 34 1 1.3130 4.2368 -1.6914 35 1 5.0103 2.9296 -0.4034 36 1 3.7751 3.2776 0.8312 37 1 6.9567 -0.1997 1.9969 38 1 5.3935 -0.9837 2.3444 39 1 5.6984 -2.5676 0.5262 40 1 7.2175 -2.5540 1.4596 41 1 10.6532 -2.4316 -3.0402 42 1 5.7806 -1.1665 -1.7924 43 1 7.3425 -0.3819 -2.1363 44 1 5.5175 1.1809 -1.2544 45 1 7.0365 1.1946 -0.3211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949002450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:09 Heat of formation + Delta-G solvation = -44.171917 kcal Electronic energy + Delta-G solvation = -26186.649580 eV Core-core repulsion = 22626.103402 eV Total energy + Delta-G solvation = -3560.546178 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88875 -40.10139 -38.66644 -37.15463 -35.72854 -33.83082 -33.05102 -32.03380 -31.65519 -29.03424 -27.78955 -26.23890 -24.98979 -24.93883 -23.31035 -22.60927 -21.36210 -20.28042 -19.06524 -18.13887 -17.78064 -17.48199 -17.20465 -16.74807 -16.30494 -16.17691 -15.97084 -15.85048 -15.59349 -15.33554 -15.19392 -14.70002 -14.52866 -14.23582 -14.03603 -13.91965 -13.56895 -13.29655 -12.93074 -12.84602 -12.66606 -12.57428 -12.42786 -12.22064 -12.06632 -11.94740 -11.79800 -11.61056 -11.49581 -11.03695 -10.91020 -10.58782 -9.94671 -9.46389 -8.88389 -8.17269 -5.57655 1.26164 1.40144 1.41448 1.47329 1.77591 2.37621 2.59226 2.80026 3.07081 3.21268 3.35467 3.63019 3.81203 3.88930 3.99105 4.00884 4.05789 4.16574 4.22223 4.26526 4.28987 4.34941 4.47361 4.48180 4.52345 4.55868 4.59325 4.63700 4.74081 4.75218 4.88476 4.90203 4.93702 5.07597 5.09389 5.20708 5.39798 5.72753 5.82336 5.90782 6.00349 6.09798 6.34086 6.83224 7.04631 7.53942 7.93965 9.02194 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.004735 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.044307 B = 5912.313830 C = 6208.310638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 N -0.526 5.526 4 C 0.013 3.987 5 C 0.056 3.944 6 O -0.388 6.388 7 C 0.080 3.920 8 C 0.034 3.966 9 H 0.074 0.926 10 C 0.522 3.478 11 O -0.555 6.555 12 N -0.602 5.602 13 C 0.106 3.894 14 C 0.137 3.863 15 N -0.618 5.618 16 C -0.251 4.251 17 H 0.056 0.944 18 C -0.033 4.033 19 N -0.960 5.960 20 Si 0.949 3.051 21 H -0.268 1.268 22 H -0.315 1.315 23 H -0.256 1.256 24 C 0.106 3.894 25 C 0.094 3.906 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.030 0.970 40 H 0.076 0.924 41 H 0.263 0.737 42 H 0.037 0.963 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.490 11.396 1.285 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.252 5.252 4 C -0.114 4.114 5 C -0.021 4.021 6 O -0.306 6.306 7 C 0.002 3.998 8 C -0.078 4.078 9 H 0.092 0.908 10 C 0.309 3.691 11 O -0.433 6.433 12 N -0.335 5.335 13 C -0.018 4.018 14 C 0.011 3.989 15 N -0.343 5.343 16 C -0.380 4.380 17 H 0.074 0.926 18 C -0.228 4.228 19 N -0.606 5.606 20 Si 0.779 3.221 21 H -0.194 1.194 22 H -0.245 1.245 23 H -0.181 1.181 24 C -0.020 4.020 25 C -0.030 4.030 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.681 11.523 2.064 23.765 hybrid contribution 0.427 -1.100 -1.309 1.763 sum -20.254 10.423 0.755 22.791 Atomic orbital electron populations 1.21845 0.92450 1.02863 1.02921 1.22222 0.97770 0.88143 1.00215 1.62072 1.00938 1.12490 1.49749 1.23069 1.00869 0.94134 0.93356 1.22977 0.80239 0.95388 1.03463 1.88016 1.19612 1.69279 1.53738 1.22575 0.97098 0.86177 0.93933 1.22318 0.90510 0.98337 0.96675 0.90826 1.20488 0.80920 0.79765 0.87896 1.90637 1.66096 1.58668 1.27916 1.48093 1.13955 1.48009 1.23408 1.22142 0.97122 0.91074 0.91480 1.21483 0.94971 0.94343 0.88093 1.44348 1.13171 1.53429 1.23381 1.18875 0.87806 1.38842 0.92473 0.92611 1.25965 0.97162 0.99464 1.00215 1.69897 1.14245 1.55193 1.21278 0.85936 0.80053 0.77180 0.78978 1.19416 1.24490 1.18088 1.21863 0.96097 0.91128 0.92906 1.22424 0.97167 0.97047 0.86343 0.91740 0.90865 0.91286 0.95778 0.91634 0.93750 0.86557 0.91846 0.85472 0.86769 0.91944 0.91085 0.88923 0.95192 0.90568 0.92847 0.94486 0.91533 0.87478 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.18 71.98 0.66 -1.75 16 2 C 0.04 1.04 5.35 86.30 0.46 1.50 16 3 N -0.53 -12.31 4.42 -874.36 -3.86 -16.18 16 4 C 0.01 0.22 4.94 86.32 0.43 0.64 16 5 C 0.06 0.87 7.01 72.02 0.50 1.38 16 6 O -0.39 -8.24 10.83 -148.98 -1.61 -9.86 16 7 C 0.08 1.77 6.01 72.02 0.43 2.20 16 8 C 0.03 0.85 1.48 44.18 0.07 0.91 16 9 H 0.07 1.83 6.87 -2.39 -0.02 1.82 16 10 C 0.52 15.95 6.25 87.66 0.55 16.50 16 11 O -0.56 -19.98 14.21 -3.05 -0.04 -20.02 16 12 N -0.60 -18.78 2.94 -817.16 -2.40 -21.19 16 13 C 0.11 3.44 6.61 86.56 0.57 4.01 16 14 C 0.14 5.15 6.69 86.56 0.58 5.72 16 15 N -0.62 -27.62 2.76 -697.34 -1.93 -29.54 16 16 C -0.25 -13.64 10.09 84.03 0.85 -12.79 16 17 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 18 C -0.03 -1.88 5.37 84.86 0.46 -1.42 16 19 N -0.96 -58.83 13.97 21.65 0.30 -58.53 16 20 Si 0.95 44.40 24.31 68.60 1.67 46.07 16 21 H -0.27 -11.53 6.79 99.48 0.68 -10.85 16 22 H -0.32 -15.32 7.11 99.48 0.71 -14.62 16 23 H -0.26 -11.39 5.81 99.48 0.58 -10.82 16 24 C 0.11 4.10 4.27 86.42 0.37 4.47 16 25 C 0.09 2.84 5.79 86.42 0.50 3.35 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 0.96 6.28 -2.39 -0.01 0.94 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.02 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.07 1.94 6.22 -2.39 -0.01 1.93 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 1.47 6.05 -2.39 -0.01 1.45 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.13 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.11 2.28 6.66 -2.39 -0.02 2.27 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.09 2.93 7.02 -2.39 -0.02 2.92 16 39 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 41 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 42 H 0.04 1.43 6.73 -2.39 -0.02 1.41 16 43 H 0.07 2.78 4.14 -2.39 -0.01 2.77 16 44 H 0.11 2.59 4.78 -2.39 -0.01 2.58 16 45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -68.50 332.59 -0.63 -69.13 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.82 Total: 15.39 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 6.42 Total: 24.73 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -7.89 Total: -125.44 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.66 Total: -29.88 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.67 Total: 46.07 kcal Total: -68.50 -0.63 -69.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949002450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.961 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds