Wall clock time and date at job start Tue Mar 31 2020 03:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46920 * 2 1 4 4 C 1.34776 * 120.00554 * 84.29334 * 3 2 1 5 5 O 1.21280 * 119.99747 * 4.76525 * 4 3 2 6 6 C 1.50702 * 120.00131 * 184.75502 * 4 3 2 7 7 H 1.08998 * 109.50794 * 325.40541 * 6 4 3 8 8 C 1.53103 * 109.50336 * 85.53456 * 6 4 3 9 9 O 1.43013 * 109.25532 * 176.78281 * 8 6 4 10 10 C 1.43012 * 113.74016 * 301.32810 * 9 8 6 11 11 C 1.53102 * 109.25811 * 58.67321 * 10 9 8 12 12 N 1.47014 * 109.50523 * 205.31516 * 6 4 3 13 13 C 1.46893 * 110.99951 * 57.67671 * 12 6 4 14 14 C 1.46506 * 119.99850 * 264.29548 * 3 2 1 15 15 C 1.53951 * 113.73725 * 36.67114 * 14 3 2 16 16 N 1.47587 * 86.11588 * 222.04881 * 15 14 3 17 17 C 1.36934 * 134.49200 * 204.64138 * 16 15 14 18 18 H 1.08000 * 119.99963 * 184.95997 * 17 16 15 19 19 C 1.38820 * 120.00111 * 4.96294 * 17 16 15 20 20 N 1.31614 * 119.99837 * 5.06290 * 19 17 16 21 21 Si 1.86795 * 119.99873 * 185.05710 * 19 17 16 22 22 H 1.48505 * 109.46916 * 95.00406 * 21 19 17 23 23 H 1.48501 * 109.46732 * 214.99718 * 21 19 17 24 24 H 1.48492 * 109.47384 * 335.00204 * 21 19 17 25 25 C 1.47579 * 91.01258 * 24.64525 * 16 15 14 26 26 H 1.08999 * 109.47220 * 60.00717 * 1 2 3 27 27 H 1.09001 * 109.47422 * 300.00152 * 1 2 3 28 28 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46761 * 119.99555 * 2 1 3 30 30 H 1.08997 * 109.47200 * 239.99123 * 2 1 3 31 31 H 1.09001 * 109.50340 * 296.71696 * 8 6 4 32 32 H 1.08998 * 109.50721 * 56.84975 * 8 6 4 33 33 H 1.09007 * 109.50846 * 298.73731 * 10 9 8 34 34 H 1.08996 * 109.54649 * 178.62841 * 10 9 8 35 35 H 1.09006 * 109.50525 * 183.21985 * 11 10 9 36 36 H 1.08997 * 109.54051 * 63.10959 * 11 10 9 37 37 H 1.09000 * 109.47518 * 54.84927 * 13 12 6 38 38 H 1.09003 * 109.46939 * 174.84921 * 13 12 6 39 39 H 1.09002 * 109.47572 * 294.84481 * 13 12 6 40 40 H 1.08995 * 112.94883 * 168.40794 * 14 3 2 41 41 H 1.08994 * 113.77207 * 336.35520 * 15 14 3 42 42 H 1.09009 * 113.76462 * 107.74982 * 15 14 3 43 43 H 0.97001 * 120.00598 * 179.97438 * 20 19 17 44 44 H 1.09005 * 113.76811 * 221.05534 * 25 16 15 45 45 H 1.08995 * 113.77234 * 89.65899 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1335 2.0553 1.1613 5 8 1.9160 1.4924 2.2134 6 6 2.5328 3.5085 1.1527 7 1 3.2367 3.6877 0.3400 8 6 1.2892 4.3791 0.9544 9 8 1.6630 5.7579 1.0220 10 6 2.2815 6.1268 2.2576 11 6 3.5352 5.2738 2.4691 12 7 3.1654 3.8513 2.4348 13 6 4.3329 2.9975 2.6907 14 6 2.3813 2.0298 -1.2625 15 6 1.4720 1.6416 -2.4426 16 7 2.7107 1.5638 -3.2411 17 6 3.0019 1.6787 -4.5742 18 1 4.0075 1.4988 -4.9247 19 6 2.0047 2.0266 -5.4750 20 7 0.8042 2.3430 -5.0380 21 14 2.3667 2.0458 -7.3075 22 1 1.9624 0.7480 -7.9055 23 1 1.6046 3.1460 -7.9510 24 1 3.8204 2.2586 -7.5227 25 6 3.5094 1.3123 -2.0259 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5140 -0.8899 31 1 0.8493 4.1686 -0.0205 32 1 0.5629 4.1601 1.7371 33 1 1.5841 5.9586 3.0783 34 1 2.5592 7.1803 2.2261 35 1 3.9782 5.5114 3.4363 36 1 4.2555 5.4819 1.6779 37 1 5.0224 3.0628 1.8490 38 1 4.8353 3.3315 3.5986 39 1 4.0076 1.9646 2.8145 40 1 2.5352 3.1039 -1.1596 41 1 0.9711 0.6821 -2.3141 42 1 0.7961 2.4371 -2.7565 43 1 0.1074 2.5864 -5.6673 44 1 4.4603 1.8449 -2.0071 45 1 3.6070 0.2561 -1.7750 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949922375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:33 Heat of formation + Delta-G solvation = 1.462225 kcal Electronic energy + Delta-G solvation = -26067.786998 eV Core-core repulsion = 22509.219666 eV Total energy + Delta-G solvation = -3558.567333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65716 -39.02260 -37.74160 -35.65191 -34.49454 -32.21231 -31.88530 -30.18667 -28.76832 -27.50905 -25.00475 -24.93324 -24.26385 -23.46330 -22.92374 -20.79667 -19.96125 -18.30186 -17.57073 -16.76651 -16.53304 -16.33267 -15.84190 -15.28430 -14.91566 -14.83408 -14.63744 -14.26079 -13.94205 -13.84321 -13.43562 -13.11859 -12.84926 -12.60216 -12.41323 -12.17945 -12.04754 -11.72820 -11.68528 -11.59844 -11.30893 -11.21765 -10.93289 -10.83912 -10.73127 -10.65644 -10.39919 -10.11735 -9.90771 -9.65661 -9.34639 -8.89593 -8.46105 -8.21258 -6.98772 -5.85906 -3.20912 2.72650 3.07543 3.34411 3.39733 3.41768 3.66418 3.86154 4.36955 4.61674 4.72442 4.84401 4.97039 5.03366 5.09524 5.11329 5.28240 5.37941 5.40197 5.42829 5.45346 5.48827 5.55604 5.62109 5.66059 5.70921 5.73348 5.87072 5.88234 5.96258 6.13920 6.17682 6.32463 6.38454 6.52712 6.67063 6.81126 6.86568 7.01330 7.05339 7.16554 7.43226 7.73663 7.88538 8.40815 8.94092 9.60710 10.45969 11.29686 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.004637 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.818460 B = 6036.507776 C = 6737.721968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.593 5.593 4 C 0.522 3.478 5 O -0.531 6.531 6 C 0.029 3.971 7 H 0.075 0.925 8 C 0.077 3.923 9 O -0.376 6.376 10 C 0.060 3.940 11 C 0.018 3.982 12 N -0.519 5.519 13 C 0.020 3.980 14 C 0.075 3.925 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.108 3.892 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.036 0.964 42 H 0.086 0.914 43 H 0.255 0.745 44 H 0.045 0.955 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 3.057 14.389 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.326 5.326 4 C 0.308 3.692 5 O -0.407 6.407 6 C -0.083 4.083 7 H 0.093 0.907 8 C 0.000 4.000 9 O -0.294 6.294 10 C -0.017 4.017 11 C -0.111 4.111 12 N -0.245 5.245 13 C -0.127 4.127 14 C -0.029 4.029 15 C 0.023 3.977 16 N -0.331 5.331 17 C -0.353 4.353 18 H 0.099 0.901 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.019 4.019 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.054 0.946 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.497 2.872 14.815 15.296 hybrid contribution 0.917 -0.170 -1.570 1.826 sum 3.414 2.702 13.245 13.942 Atomic orbital electron populations 1.22193 0.95820 1.01992 1.02668 1.21349 0.94534 0.82230 1.02705 1.48236 1.63803 1.13958 1.06635 1.20089 0.77625 0.87723 0.83721 1.90647 1.49997 1.69388 1.30716 1.22409 0.99328 0.94107 0.92480 0.90725 1.22564 0.93565 0.80282 1.03605 1.88056 1.79301 1.25253 1.36745 1.22708 0.93320 0.98546 0.87144 1.22860 0.97868 0.88139 1.02195 1.61973 1.28563 1.03348 1.30608 1.22488 0.90837 0.99200 1.00215 1.24251 0.99549 0.97520 0.81584 1.22812 0.91063 0.99633 0.84147 1.45625 1.03079 1.83049 1.01371 1.18976 0.95437 1.40702 0.80202 0.90134 1.24786 0.95815 1.01250 0.98225 1.69791 1.02492 1.50866 1.33193 0.86086 0.77503 0.77345 0.84736 1.21580 1.21562 1.20504 1.22985 0.94840 0.97228 0.86867 0.91445 0.92631 0.92017 0.90739 0.89904 0.87291 0.91584 0.92106 0.88261 0.89303 0.93708 0.95629 0.91240 0.89910 0.87253 0.94599 0.89632 0.93472 0.93634 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.95 37.16 0.37 -2.02 16 2 C 0.11 1.71 5.15 -4.04 -0.02 1.69 16 3 N -0.59 -9.43 2.70 -167.89 -0.45 -9.88 16 4 C 0.52 8.37 5.95 -10.98 -0.07 8.31 16 5 O -0.53 -9.67 14.81 5.56 0.08 -9.59 16 6 C 0.03 0.41 1.54 -68.75 -0.11 0.31 16 7 H 0.08 1.11 6.32 -51.93 -0.33 0.79 16 8 C 0.08 1.09 6.17 37.21 0.23 1.32 16 9 O -0.38 -5.24 10.83 -35.23 -0.38 -5.62 16 10 C 0.06 0.64 7.01 37.21 0.26 0.90 16 11 C 0.02 0.19 5.65 -3.71 -0.02 0.17 16 12 N -0.52 -6.93 4.53 -235.96 -1.07 -8.00 16 13 C 0.02 0.25 9.12 60.06 0.55 0.80 16 14 C 0.08 1.33 4.14 -70.13 -0.29 1.04 16 15 C 0.15 3.24 6.68 -2.97 -0.02 3.22 16 16 N -0.60 -14.63 3.69 -178.06 -0.66 -15.28 16 17 C -0.23 -6.07 10.69 -15.06 -0.16 -6.23 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 20 N -0.92 -26.01 11.29 55.49 0.63 -25.39 16 21 Si 0.91 21.47 29.56 -169.99 -5.02 16.44 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.11 2.09 8.44 -2.97 -0.03 2.07 16 26 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.10 7.54 -51.93 -0.39 0.71 16 30 H 0.08 1.27 6.15 -51.93 -0.32 0.95 16 31 H 0.11 1.55 7.84 -51.93 -0.41 1.15 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.03 0.30 8.13 -51.93 -0.42 -0.12 16 38 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.08 1.18 6.27 -51.93 -0.33 0.86 16 40 H 0.11 1.91 5.46 -51.93 -0.28 1.63 16 41 H 0.04 0.78 5.31 -51.93 -0.28 0.50 16 42 H 0.09 2.09 6.86 -51.92 -0.36 1.74 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.71 7.06 -51.93 -0.37 0.35 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -30.79 347.49 -8.20 -38.98 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.16 Total: 1.74 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 0.60 Total: 11.37 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -1.55 Total: -58.56 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.30 Total: -15.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.79 -8.20 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949922375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.445 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds