Wall clock time and date at job start Tue Mar 31 2020 03:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46920 * 2 1 4 4 C 1.34776 * 120.00554 * 84.29334 * 3 2 1 5 5 O 1.21280 * 119.99747 * 4.76525 * 4 3 2 6 6 C 1.50702 * 120.00131 * 184.75502 * 4 3 2 7 7 H 1.08998 * 109.50794 * 325.40541 * 6 4 3 8 8 C 1.53103 * 109.50336 * 85.53456 * 6 4 3 9 9 O 1.43013 * 109.25532 * 176.78281 * 8 6 4 10 10 C 1.43012 * 113.74016 * 301.32810 * 9 8 6 11 11 C 1.53102 * 109.25811 * 58.67321 * 10 9 8 12 12 N 1.47014 * 109.50523 * 205.31516 * 6 4 3 13 13 C 1.46893 * 110.99951 * 57.67671 * 12 6 4 14 14 C 1.46506 * 119.99850 * 264.29548 * 3 2 1 15 15 C 1.53951 * 113.73725 * 36.67114 * 14 3 2 16 16 N 1.47587 * 86.11588 * 222.04881 * 15 14 3 17 17 C 1.36934 * 134.49200 * 204.64138 * 16 15 14 18 18 H 1.08000 * 119.99963 * 184.95997 * 17 16 15 19 19 C 1.38820 * 120.00111 * 4.96294 * 17 16 15 20 20 N 1.31614 * 119.99837 * 5.06290 * 19 17 16 21 21 Si 1.86795 * 119.99873 * 185.05710 * 19 17 16 22 22 H 1.48505 * 109.46916 * 95.00406 * 21 19 17 23 23 H 1.48501 * 109.46732 * 214.99718 * 21 19 17 24 24 H 1.48492 * 109.47384 * 335.00204 * 21 19 17 25 25 C 1.47579 * 91.01258 * 24.64525 * 16 15 14 26 26 H 1.08999 * 109.47220 * 60.00717 * 1 2 3 27 27 H 1.09001 * 109.47422 * 300.00152 * 1 2 3 28 28 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46761 * 119.99555 * 2 1 3 30 30 H 1.08997 * 109.47200 * 239.99123 * 2 1 3 31 31 H 1.09001 * 109.50340 * 296.71696 * 8 6 4 32 32 H 1.08998 * 109.50721 * 56.84975 * 8 6 4 33 33 H 1.09007 * 109.50846 * 298.73731 * 10 9 8 34 34 H 1.08996 * 109.54649 * 178.62841 * 10 9 8 35 35 H 1.09006 * 109.50525 * 183.21985 * 11 10 9 36 36 H 1.08997 * 109.54051 * 63.10959 * 11 10 9 37 37 H 1.09000 * 109.47518 * 54.84927 * 13 12 6 38 38 H 1.09003 * 109.46939 * 174.84921 * 13 12 6 39 39 H 1.09002 * 109.47572 * 294.84481 * 13 12 6 40 40 H 1.08995 * 112.94883 * 168.40794 * 14 3 2 41 41 H 1.08994 * 113.77207 * 336.35520 * 15 14 3 42 42 H 1.09009 * 113.76462 * 107.74982 * 15 14 3 43 43 H 0.97001 * 120.00598 * 179.97438 * 20 19 17 44 44 H 1.09005 * 113.76811 * 221.05534 * 25 16 15 45 45 H 1.08995 * 113.77234 * 89.65899 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1335 2.0553 1.1613 5 8 1.9160 1.4924 2.2134 6 6 2.5328 3.5085 1.1527 7 1 3.2367 3.6877 0.3400 8 6 1.2892 4.3791 0.9544 9 8 1.6630 5.7579 1.0220 10 6 2.2815 6.1268 2.2576 11 6 3.5352 5.2738 2.4691 12 7 3.1654 3.8513 2.4348 13 6 4.3329 2.9975 2.6907 14 6 2.3813 2.0298 -1.2625 15 6 1.4720 1.6416 -2.4426 16 7 2.7107 1.5638 -3.2411 17 6 3.0019 1.6787 -4.5742 18 1 4.0075 1.4988 -4.9247 19 6 2.0047 2.0266 -5.4750 20 7 0.8042 2.3430 -5.0380 21 14 2.3667 2.0458 -7.3075 22 1 1.9624 0.7480 -7.9055 23 1 1.6046 3.1460 -7.9510 24 1 3.8204 2.2586 -7.5227 25 6 3.5094 1.3123 -2.0259 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5140 -0.8899 31 1 0.8493 4.1686 -0.0205 32 1 0.5629 4.1601 1.7371 33 1 1.5841 5.9586 3.0783 34 1 2.5592 7.1803 2.2261 35 1 3.9782 5.5114 3.4363 36 1 4.2555 5.4819 1.6779 37 1 5.0224 3.0628 1.8490 38 1 4.8353 3.3315 3.5986 39 1 4.0076 1.9646 2.8145 40 1 2.5352 3.1039 -1.1596 41 1 0.9711 0.6821 -2.3141 42 1 0.7961 2.4371 -2.7565 43 1 0.1074 2.5864 -5.6673 44 1 4.4603 1.8449 -2.0071 45 1 3.6070 0.2561 -1.7750 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949922375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:33 Heat of formation + Delta-G solvation = -20.113646 kcal Electronic energy + Delta-G solvation = -26068.722598 eV Core-core repulsion = 22509.219666 eV Total energy + Delta-G solvation = -3559.502933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90939 -40.27590 -39.19364 -36.72004 -35.95650 -34.00457 -33.13495 -31.36413 -29.80624 -29.33953 -26.62722 -26.07769 -25.29956 -25.17721 -24.09878 -21.94869 -21.48482 -19.63656 -19.03353 -18.47220 -17.60108 -17.53911 -17.06744 -16.76778 -16.32215 -15.92858 -15.86392 -15.73309 -15.45502 -14.93431 -14.79331 -14.38436 -14.21530 -14.01438 -13.58714 -13.39876 -13.35565 -13.21282 -13.07964 -12.87509 -12.69866 -12.66271 -12.49589 -12.26870 -12.13209 -11.95603 -11.89164 -11.70993 -11.51894 -11.02794 -10.87518 -10.57105 -9.65350 -9.44753 -8.92596 -7.90242 -5.25947 1.43265 1.48234 1.48691 1.57895 1.80458 2.47452 2.66142 2.83008 3.25635 3.33653 3.51147 3.65745 3.76381 3.82542 3.92199 4.07733 4.16720 4.21798 4.25243 4.35187 4.39950 4.48037 4.49146 4.52584 4.59285 4.63004 4.74938 4.81746 4.82546 4.85655 4.92271 4.97059 4.98227 5.20947 5.29979 5.35689 5.50207 5.58537 5.71543 5.89303 5.92558 6.03216 6.37432 6.90736 7.09803 7.59411 8.51655 9.24715 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.004637 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.818460 B = 6036.507776 C = 6737.721968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 N -0.591 5.591 4 C 0.527 3.473 5 O -0.550 6.550 6 C 0.033 3.967 7 H 0.071 0.929 8 C 0.082 3.918 9 O -0.392 6.392 10 C 0.054 3.946 11 C 0.018 3.982 12 N -0.532 5.532 13 C 0.023 3.977 14 C 0.108 3.892 15 C 0.151 3.849 16 N -0.633 5.633 17 C -0.235 4.235 18 H 0.084 0.916 19 C -0.059 4.059 20 N -0.947 5.947 21 Si 0.975 3.025 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.111 3.889 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.044 0.956 37 H 0.028 0.972 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.115 0.885 41 H 0.036 0.964 42 H 0.053 0.947 43 H 0.250 0.750 44 H 0.058 0.942 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 3.438 15.387 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.010 4.010 3 N -0.324 5.324 4 C 0.314 3.686 5 O -0.427 6.427 6 C -0.079 4.079 7 H 0.088 0.912 8 C 0.004 3.996 9 O -0.311 6.311 10 C -0.023 4.023 11 C -0.109 4.109 12 N -0.258 5.258 13 C -0.124 4.124 14 C 0.003 3.997 15 C 0.025 3.975 16 N -0.360 5.360 17 C -0.363 4.363 18 H 0.102 0.898 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.804 3.196 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.192 1.192 25 C -0.015 4.015 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.803 3.245 15.848 16.618 hybrid contribution 0.545 -0.296 -1.773 1.878 sum 4.348 2.949 14.075 15.024 Atomic orbital electron populations 1.22113 0.95195 1.03062 1.01513 1.21433 0.95018 0.81666 1.02835 1.48169 1.63840 1.14343 1.06006 1.20328 0.76858 0.88276 0.83124 1.90639 1.50883 1.69991 1.31222 1.22325 0.99471 0.92812 0.93266 0.91181 1.22436 0.93352 0.80750 1.03028 1.88035 1.79703 1.24726 1.38600 1.22988 0.93253 1.00045 0.85985 1.22971 0.97880 0.86404 1.03657 1.62008 1.29255 1.04959 1.29574 1.22460 0.90547 0.97969 1.01448 1.23682 0.97170 0.97609 0.81245 1.22691 0.90577 0.98598 0.85614 1.45921 1.05016 1.83358 1.01734 1.19326 0.95594 1.39583 0.81785 0.89847 1.25556 0.95849 1.01752 1.02095 1.69969 1.03194 1.52302 1.34015 0.85108 0.77748 0.76780 0.79980 1.21645 1.22095 1.19201 1.23107 0.95327 0.98162 0.84887 0.93027 0.93164 0.89920 0.90077 0.90147 0.88220 0.91820 0.91738 0.85576 0.86648 0.93749 0.95375 0.88898 0.92096 0.86779 0.94589 0.92831 0.94125 0.92402 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.46 9.95 71.98 0.72 -3.74 16 2 C 0.11 3.27 5.15 86.38 0.44 3.71 16 3 N -0.59 -18.40 2.70 -803.48 -2.17 -20.57 16 4 C 0.53 16.47 5.95 87.66 0.52 16.99 16 5 O -0.55 -19.54 14.81 -3.03 -0.04 -19.59 16 6 C 0.03 0.93 1.54 44.18 0.07 1.00 16 7 H 0.07 2.01 6.32 -2.39 -0.02 2.00 16 8 C 0.08 2.27 6.17 72.02 0.44 2.72 16 9 O -0.39 -10.49 10.83 -148.98 -1.61 -12.10 16 10 C 0.05 1.02 7.01 72.02 0.50 1.53 16 11 C 0.02 0.34 5.65 86.31 0.49 0.83 16 12 N -0.53 -13.22 4.53 -900.46 -4.08 -17.29 16 13 C 0.02 0.53 9.12 127.69 1.16 1.70 16 14 C 0.11 3.77 4.14 46.75 0.19 3.96 16 15 C 0.15 6.65 6.68 86.48 0.58 7.23 16 16 N -0.63 -30.64 3.69 -717.25 -2.65 -33.29 16 17 C -0.23 -12.62 10.69 84.04 0.90 -11.72 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 19 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 20 N -0.95 -54.84 11.29 21.65 0.24 -54.60 16 21 Si 0.98 44.32 29.56 68.60 2.03 46.35 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.11 4.19 8.44 86.48 0.73 4.92 16 26 H 0.05 1.59 6.54 -2.39 -0.02 1.57 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 2.29 7.54 -2.39 -0.02 2.27 16 30 H 0.08 2.39 6.15 -2.39 -0.01 2.37 16 31 H 0.10 2.88 7.84 -2.39 -0.02 2.86 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.12 1.57 8.10 -2.38 -0.02 1.55 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.03 0.61 8.13 -2.39 -0.02 0.60 16 38 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 39 H 0.06 1.66 6.27 -2.39 -0.01 1.65 16 40 H 0.11 3.94 5.46 -2.39 -0.01 3.93 16 41 H 0.04 1.59 5.31 -2.39 -0.01 1.57 16 42 H 0.05 2.71 6.86 -2.38 -0.02 2.70 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.05 1.82 7.06 -2.39 -0.02 1.81 16 Total: -1.00 -65.59 347.49 -0.08 -65.67 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.98 Total: 19.04 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 7.22 Total: 26.38 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -8.65 Total: -125.75 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.66 Total: -31.69 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -65.59 -0.08 -65.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949922375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.556 kcal (2) G-P(sol) polarization free energy of solvation -65.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds