Wall clock time and date at job start Tue Mar 31 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46891 * 109.47633 * 2 1 4 4 C 1.47021 * 110.99948 * 284.31716 * 3 2 1 5 5 C 1.53099 * 109.25893 * 177.60227 * 4 3 2 6 6 O 1.43016 * 109.25616 * 56.85118 * 5 4 3 7 7 C 1.43020 * 113.74006 * 301.33020 * 6 5 4 8 8 C 1.47018 * 111.00024 * 160.63833 * 3 2 1 9 9 H 1.08995 * 109.47304 * 62.43880 * 8 3 2 10 10 C 1.50696 * 109.54478 * 302.30582 * 8 3 2 11 11 O 1.21287 * 119.99759 * 331.55555 * 10 8 3 12 12 N 1.34772 * 120.00363 * 151.55980 * 10 8 3 13 13 C 1.47022 * 125.64762 * 5.02379 * 12 10 8 14 14 C 1.54319 * 107.27402 * 181.02602 * 13 12 10 15 15 C 1.55159 * 102.94193 * 22.19353 * 14 13 12 16 16 H 1.09006 * 110.99901 * 82.57291 * 15 14 13 17 17 N 1.46495 * 111.00486 * 206.38344 * 15 14 13 18 18 C 1.36936 * 120.00245 * 273.54904 * 17 15 14 19 19 H 1.07994 * 119.99931 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99912 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47086 * 90.00087 * 22 20 18 24 24 H 1.48500 * 109.47089 * 209.99946 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99781 * 22 20 18 26 26 C 1.47429 * 125.65094 * 184.72277 * 12 10 8 27 27 H 1.08998 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46985 * 300.00089 * 1 2 3 29 29 H 1.08995 * 109.46843 * 59.99837 * 1 2 3 30 30 H 1.08999 * 109.46985 * 239.99911 * 2 1 3 31 31 H 1.09000 * 109.47260 * 120.00384 * 2 1 3 32 32 H 1.09005 * 109.50609 * 57.67450 * 4 3 2 33 33 H 1.08995 * 109.50985 * 297.54353 * 4 3 2 34 34 H 1.08997 * 109.50699 * 296.91834 * 5 4 3 35 35 H 1.08997 * 109.54471 * 176.80277 * 5 4 3 36 36 H 1.08995 * 109.50806 * 178.60352 * 7 6 5 37 37 H 1.09006 * 109.50308 * 298.69018 * 7 6 5 38 38 H 1.09000 * 109.88725 * 300.44738 * 13 12 10 39 39 H 1.09002 * 109.88156 * 61.60814 * 13 12 10 40 40 H 1.08998 * 110.72032 * 140.55933 * 14 13 12 41 41 H 1.09000 * 110.72224 * 263.82990 * 14 13 12 42 42 H 0.97001 * 119.99792 * 93.54472 * 17 15 14 43 43 H 0.96998 * 119.99829 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.36403 * 274.74144 * 26 12 10 45 45 H 1.08996 * 110.36495 * 37.06926 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8755 1.9947 -1.3299 5 6 2.3408 3.4521 -1.2704 6 8 3.6897 3.4975 -0.7974 7 6 3.8665 2.9126 0.4957 8 6 3.4163 1.4498 0.4550 9 1 4.0497 0.8931 -0.2355 10 6 3.5256 0.8512 1.8337 11 8 2.5758 0.8862 2.5871 12 7 4.6789 0.2771 2.2295 13 6 5.9334 0.2572 1.4631 14 6 6.9669 -0.5297 2.2962 15 6 6.0767 -1.3935 3.2283 16 1 5.7389 -2.2963 2.7193 17 7 6.7825 -1.7261 4.4682 18 6 7.5956 -2.8268 4.5192 19 1 7.7162 -3.4499 3.6454 20 6 8.2639 -3.1422 5.6942 21 7 8.1165 -2.3831 6.7593 22 14 9.3724 -4.6441 5.7639 23 1 10.7528 -4.2590 5.3745 24 1 9.3816 -5.1890 7.1453 25 1 8.8642 -5.6784 4.8273 26 6 4.8932 -0.4297 3.5055 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.8297 1.9589 -1.6353 33 1 2.4843 1.4473 -2.0494 34 1 1.6979 4.0119 -0.5912 35 1 2.2893 3.8923 -2.2662 36 1 4.9185 2.9619 0.7767 37 1 3.2686 3.4573 1.2264 38 1 5.7749 -0.2381 0.5052 39 1 6.2856 1.2761 1.3020 40 1 7.5795 -1.1619 1.6534 41 1 7.5902 0.1489 2.8785 42 1 6.6740 -1.1666 5.2531 43 1 8.5833 -2.6037 7.5805 44 1 5.1539 0.2784 4.2922 45 1 4.0021 -0.9934 3.7812 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969144986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:00 Heat of formation + Delta-G solvation = -48.740384 kcal Electronic energy + Delta-G solvation = -25148.574908 eV Core-core repulsion = 21587.830627 eV Total energy + Delta-G solvation = -3560.744281 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72432 -39.05474 -37.34766 -36.13555 -34.20331 -32.25079 -31.23702 -31.12972 -29.58613 -27.97258 -26.77501 -25.14107 -23.61494 -22.80901 -22.26500 -21.01590 -20.11372 -19.08660 -17.44638 -17.26876 -16.84621 -16.64360 -15.78475 -15.62546 -15.16515 -15.08397 -14.49452 -14.38721 -14.15822 -13.85407 -13.45698 -13.37854 -13.26452 -12.72584 -12.62140 -12.34463 -12.17810 -11.99438 -11.92470 -11.67368 -11.62905 -11.20531 -11.05033 -10.89114 -10.82938 -10.72596 -10.36686 -10.13954 -10.08902 -9.81040 -9.57072 -9.00051 -8.64105 -8.48109 -7.09176 -5.85964 -3.16934 2.57440 2.88165 3.38438 3.42665 3.44036 3.45687 3.65812 4.42341 4.50570 4.51498 4.64909 4.75406 4.80623 4.89141 4.98417 5.06362 5.16894 5.19666 5.25962 5.32254 5.33853 5.40026 5.44617 5.50941 5.55287 5.63770 5.67623 5.69225 5.82184 5.90984 6.09303 6.09700 6.17342 6.32175 6.46039 6.53744 6.62043 6.69979 6.78247 6.85893 7.61586 7.62876 8.23251 8.31378 9.43022 9.96532 10.31431 11.36162 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028405 B = 0.003154 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.506120 B = 8875.320717 C = 9263.633045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.516 5.516 4 C 0.019 3.981 5 C 0.060 3.940 6 O -0.379 6.379 7 C 0.078 3.922 8 C 0.036 3.964 9 H 0.069 0.931 10 C 0.532 3.468 11 O -0.520 6.520 12 N -0.613 5.613 13 C 0.099 3.901 14 C -0.154 4.154 15 C 0.172 3.828 16 H 0.063 0.937 17 N -0.715 5.715 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.929 5.929 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.101 3.899 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.070 0.930 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 9.756 -17.946 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 N -0.242 5.242 4 C -0.109 4.109 5 C -0.017 4.017 6 O -0.297 6.297 7 C 0.000 4.000 8 C -0.076 4.076 9 H 0.087 0.913 10 C 0.318 3.682 11 O -0.396 6.396 12 N -0.349 5.349 13 C -0.024 4.024 14 C -0.196 4.196 15 C 0.060 3.940 16 H 0.081 0.919 17 N -0.355 5.355 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.022 4.022 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.799 9.981 -17.326 23.217 hybrid contribution 1.018 -1.268 -0.161 1.634 sum -10.781 8.712 -17.486 22.314 Atomic orbital electron populations 1.21688 0.94274 1.01479 1.02367 1.22170 0.96913 0.87701 1.01111 1.61977 1.17308 1.19627 1.25285 1.22873 1.02440 0.96116 0.89504 1.22726 0.83521 0.95061 1.00359 1.88015 1.27763 1.79955 1.33933 1.22528 1.02147 0.89568 0.85764 1.22270 0.91293 0.99038 0.94984 0.91304 1.19723 0.81717 0.78552 0.88213 1.90722 1.37070 1.57138 1.54636 1.48517 1.10541 1.55064 1.20728 1.22159 0.84456 1.00487 0.95347 1.23422 0.97562 0.99498 0.99088 1.21333 0.89454 0.94060 0.89118 0.91942 1.42254 1.53271 1.31385 1.08611 1.19196 1.19314 1.02322 0.96836 0.90986 1.24776 1.00764 0.99171 0.95869 1.69661 1.46489 1.39628 1.01907 0.86168 0.80599 0.82368 0.76884 1.21606 1.21695 1.20682 1.22584 0.99821 0.94910 0.84877 0.92299 0.91444 0.93069 0.94792 0.90186 0.89003 0.93797 0.91919 0.88183 0.87832 0.91308 0.92019 0.91906 0.90657 0.90378 0.77894 0.93306 0.91155 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 10.02 37.16 0.37 -1.01 16 2 C 0.05 0.56 5.36 -3.83 -0.02 0.53 16 3 N -0.52 -6.03 4.21 -227.72 -0.96 -6.99 16 4 C 0.02 0.16 5.47 -3.71 -0.02 0.14 16 5 C 0.06 0.51 7.01 37.21 0.26 0.77 16 6 O -0.38 -4.14 10.83 -35.23 -0.38 -4.53 16 7 C 0.08 0.87 6.27 37.21 0.23 1.10 16 8 C 0.04 0.44 1.91 -68.75 -0.13 0.31 16 9 H 0.07 0.79 7.14 -51.93 -0.37 0.42 16 10 C 0.53 8.07 5.68 -10.99 -0.06 8.01 16 11 O -0.52 -9.69 15.98 5.55 0.09 -9.60 16 12 N -0.61 -9.16 3.32 -170.38 -0.57 -9.72 16 13 C 0.10 1.26 6.28 -3.07 -0.02 1.24 16 14 C -0.15 -2.42 6.64 -24.90 -0.17 -2.59 16 15 C 0.17 3.23 3.70 -65.66 -0.24 2.99 16 16 H 0.06 1.20 8.13 -51.93 -0.42 0.77 16 17 N -0.71 -17.07 5.28 -51.24 -0.27 -17.34 16 18 C -0.25 -6.53 9.98 -15.06 -0.15 -6.68 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 22 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 C 0.10 1.75 6.51 -2.41 -0.02 1.73 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.42 6.89 -51.93 -0.36 0.06 16 30 H 0.03 0.35 7.99 -51.93 -0.41 -0.07 16 31 H 0.08 1.12 5.98 -51.93 -0.31 0.81 16 32 H 0.09 0.67 6.82 -51.93 -0.35 0.32 16 33 H 0.04 0.38 8.13 -51.93 -0.42 -0.04 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.04 7.51 -51.93 -0.39 0.65 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 39 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.39 9.88 7.71 -40.82 -0.31 9.57 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 45 H 0.08 1.37 8.08 -51.93 -0.42 0.96 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -31.10 354.59 -8.59 -39.69 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.49 Total: 6.83 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.06 Total: 6.21 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -1.07 Total: -60.65 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.29 Total: -14.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.10 -8.59 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969144986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.053 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds