Wall clock time and date at job start Tue Mar 31 2020 03:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46516 * 2 1 4 4 C 1.47015 * 111.00305 * 293.95116 * 3 2 1 5 5 C 1.53099 * 109.26232 * 182.39413 * 4 3 2 6 6 O 1.43015 * 109.25579 * 303.15553 * 5 4 3 7 7 C 1.43013 * 113.74175 * 58.66779 * 6 5 4 8 8 H 1.09006 * 109.50408 * 61.30647 * 7 6 5 9 9 C 1.50698 * 109.50810 * 181.39346 * 7 6 5 10 10 O 1.21276 * 120.00049 * 4.99726 * 9 7 6 11 11 N 1.34777 * 119.99820 * 184.99976 * 9 7 6 12 12 C 1.47425 * 125.65286 * 359.97438 * 11 9 7 13 13 C 1.54907 * 104.83360 * 155.90847 * 12 11 9 14 14 C 1.55154 * 101.58470 * 37.00605 * 13 12 11 15 15 H 1.09004 * 110.71599 * 83.04023 * 14 13 12 16 16 N 1.46498 * 110.71996 * 206.13736 * 14 13 12 17 17 C 1.36943 * 119.99752 * 273.26929 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 C 1.47032 * 125.64561 * 180.02562 * 11 9 7 26 26 C 1.47011 * 111.00449 * 57.58978 * 3 2 1 27 27 H 1.09000 * 109.47233 * 60.00307 * 1 2 3 28 28 H 1.09005 * 109.46630 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47169 * 299.99998 * 1 2 3 30 30 H 1.08994 * 109.47293 * 240.00531 * 2 1 3 31 31 H 1.09000 * 109.47233 * 119.99693 * 2 1 3 32 32 H 1.08996 * 109.50325 * 62.46145 * 4 3 2 33 33 H 1.08997 * 109.50487 * 302.33464 * 4 3 2 34 34 H 1.08990 * 109.50923 * 183.21896 * 5 4 3 35 35 H 1.09003 * 109.53655 * 63.10522 * 5 4 3 36 36 H 1.09004 * 110.36498 * 37.06625 * 12 11 9 37 37 H 1.09003 * 110.45527 * 274.79201 * 12 11 9 38 38 H 1.09007 * 111.00196 * 278.93303 * 13 12 11 39 39 H 1.08994 * 111.00551 * 155.08948 * 13 12 11 40 40 H 0.97001 * 120.00384 * 93.55285 * 16 14 13 41 41 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.88003 * 61.60527 * 25 11 9 43 43 H 1.09003 * 109.88091 * 300.44198 * 25 11 9 44 44 H 1.09005 * 109.50773 * 57.66871 * 26 3 2 45 45 H 1.08998 * 109.50577 * 297.54374 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6698 2.0675 -1.2543 5 6 2.2490 3.4846 -1.2367 6 8 1.7592 4.1801 -0.0871 7 6 2.0825 3.5434 1.1521 8 1 3.1657 3.4939 1.2641 9 6 1.4944 4.3338 2.2924 10 8 0.7853 5.2910 2.0646 11 7 1.7564 3.9770 3.5654 12 6 2.5973 2.8406 3.9835 13 6 3.0824 3.2091 5.4078 14 6 1.8299 3.9154 5.9906 15 1 1.1187 3.1841 6.3747 16 7 2.2111 4.8651 7.0388 17 6 2.3502 4.4376 8.3324 18 1 2.1833 3.3994 8.5789 19 6 2.7058 5.3386 9.3267 20 7 2.8400 4.9277 10.5698 21 14 2.9938 7.1344 8.9003 22 1 1.7175 7.8834 9.0236 23 1 3.9972 7.7095 9.8318 24 1 3.4959 7.2379 7.5066 25 6 1.2500 4.6560 4.7672 26 6 1.5016 2.1270 1.1586 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5854 2.1188 -1.3505 33 1 2.0849 1.5150 -2.0972 34 1 1.9441 4.0137 -2.1395 35 1 3.3371 3.4332 -1.1948 36 1 3.4472 2.7296 3.3101 37 1 2.0112 1.9218 4.0083 38 1 3.9319 3.8911 5.3669 39 1 3.3287 2.3149 5.9802 40 1 2.3609 5.7975 6.8174 41 1 3.0889 5.5572 11.2646 42 1 0.1611 4.6102 4.7878 43 1 1.5795 5.6951 4.7725 44 1 1.7940 1.6180 2.0771 45 1 0.4144 2.1792 1.1010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970763362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:36 Heat of formation + Delta-G solvation = -43.183539 kcal Electronic energy + Delta-G solvation = -25086.970792 eV Core-core repulsion = 21526.467474 eV Total energy + Delta-G solvation = -3560.503318 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70002 -39.25934 -37.45131 -36.45679 -34.35657 -32.24387 -31.35819 -31.03068 -29.85526 -28.32205 -26.91948 -25.18891 -23.67968 -22.97445 -22.65405 -20.37938 -20.25489 -19.47863 -17.81082 -17.43909 -16.74042 -16.43787 -16.02971 -15.53901 -15.37662 -15.33916 -14.58315 -14.40276 -14.16961 -13.95609 -13.77574 -13.40795 -13.26909 -12.83120 -12.60638 -12.46407 -12.40559 -12.25187 -12.02995 -11.80874 -11.71976 -11.49143 -11.25423 -10.97121 -10.91277 -10.72837 -10.55362 -10.12656 -10.00734 -9.69556 -9.63901 -9.02174 -8.78777 -8.56183 -7.38244 -5.84783 -3.22502 2.55654 2.64345 3.35070 3.38470 3.38727 3.43334 3.74942 4.35529 4.48213 4.49796 4.53278 4.64633 4.70323 4.79883 4.85165 4.91794 4.96519 5.01579 5.11390 5.13246 5.19556 5.31208 5.36398 5.41242 5.48674 5.49553 5.52778 5.55192 5.60943 5.79277 5.81085 5.84627 6.08397 6.21608 6.35666 6.47152 6.48329 6.52567 6.74535 6.80431 7.53728 7.88917 8.17840 8.33574 9.10243 9.82871 10.00771 11.32848 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.003310 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.906970 B = 8457.384482 C = 9056.120268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.050 3.950 3 N -0.533 5.533 4 C 0.011 3.989 5 C 0.062 3.938 6 O -0.356 6.356 7 C 0.084 3.916 8 H 0.092 0.908 9 C 0.533 3.467 10 O -0.522 6.522 11 N -0.610 5.610 12 C 0.094 3.906 13 C -0.153 4.153 14 C 0.177 3.823 15 H 0.074 0.926 16 N -0.740 5.740 17 C -0.250 4.250 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.930 5.930 21 Si 0.883 3.117 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.100 3.900 26 C 0.023 3.977 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 -10.603 -24.440 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.077 4.077 3 N -0.257 5.257 4 C -0.117 4.117 5 C -0.015 4.015 6 O -0.274 6.274 7 C 0.022 3.978 8 H 0.109 0.891 9 C 0.319 3.681 10 O -0.397 6.397 11 N -0.346 5.346 12 C -0.029 4.029 13 C -0.194 4.194 14 C 0.066 3.934 15 H 0.092 0.908 16 N -0.382 5.382 17 C -0.379 4.379 18 H 0.110 0.890 19 C -0.187 4.187 20 N -0.577 5.577 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.023 4.023 26 C -0.106 4.106 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.197 0.803 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.843 -10.010 -24.377 26.366 hybrid contribution -0.417 0.967 -0.253 1.083 sum -1.260 -9.044 -24.631 26.269 Atomic orbital electron populations 1.22457 0.97932 1.02680 1.02376 1.22193 0.93175 0.89066 1.03300 1.62464 1.58780 1.02465 1.02023 1.22869 0.99834 0.96000 0.92962 1.22749 0.98742 0.91198 0.88810 1.88124 1.78148 1.48548 1.12588 1.21850 0.99987 0.90892 0.85062 0.89077 1.19632 0.81437 0.84861 0.82153 1.90725 1.37345 1.28067 1.83607 1.48373 1.50151 1.31407 1.04688 1.22545 0.93791 0.88822 0.97772 1.23533 1.00911 1.02164 0.92794 1.21157 0.93736 0.91776 0.86735 0.90818 1.42719 1.83618 1.06790 1.05092 1.19021 1.40462 0.96413 0.82053 0.88957 1.24662 1.01236 0.97621 0.95171 1.69692 1.53817 1.34306 0.99875 0.86586 0.78034 0.86616 0.77501 1.20890 1.21610 1.20243 1.22320 0.98968 0.97307 0.83672 1.22784 0.98971 0.93336 0.95469 0.92475 0.91719 0.92127 0.90325 0.90076 0.93333 0.89373 0.87896 0.92004 0.90921 0.91261 0.90558 0.89914 0.80287 0.92897 0.91167 0.91289 0.88464 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.33 9.20 37.16 0.34 -0.99 16 2 C 0.05 0.34 6.10 -3.82 -0.02 0.31 16 3 N -0.53 -4.53 4.94 -234.31 -1.16 -5.68 16 4 C 0.01 0.09 5.33 -3.71 -0.02 0.07 16 5 C 0.06 0.55 7.01 37.21 0.26 0.81 16 6 O -0.36 -4.79 10.01 -55.06 -0.55 -5.34 16 7 C 0.08 1.03 2.57 -27.83 -0.07 0.96 16 8 H 0.09 1.02 7.61 -51.93 -0.40 0.62 16 9 C 0.53 8.38 7.24 -10.99 -0.08 8.30 16 10 O -0.52 -10.43 16.84 -14.27 -0.24 -10.67 16 11 N -0.61 -8.88 3.33 -170.51 -0.57 -9.45 16 12 C 0.09 1.10 5.34 -2.53 -0.01 1.08 16 13 C -0.15 -2.28 6.77 -24.58 -0.17 -2.44 16 14 C 0.18 3.14 3.59 -66.10 -0.24 2.90 16 15 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 16 N -0.74 -16.66 5.05 -51.65 -0.26 -16.92 16 17 C -0.25 -6.72 10.46 -15.06 -0.16 -6.88 16 18 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 21 Si 0.88 21.74 27.74 -169.99 -4.71 17.02 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 25 C 0.10 1.66 6.62 -3.06 -0.02 1.64 16 26 C 0.02 0.23 4.24 -3.71 -0.02 0.21 16 27 H 0.06 0.40 6.61 -51.93 -0.34 0.06 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.48 6.42 -51.93 -0.33 0.15 16 30 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.41 6.59 -51.93 -0.34 0.07 16 33 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.72 7.33 -51.93 -0.38 0.34 16 37 H 0.07 0.68 7.22 -51.93 -0.38 0.31 16 38 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.36 8.23 5.37 -40.82 -0.22 8.01 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 44 H 0.10 0.87 5.69 -51.93 -0.30 0.58 16 45 H 0.05 0.61 6.40 -51.93 -0.33 0.28 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -33.34 347.20 -9.01 -42.35 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.23 Total: 4.98 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.30 Total: 6.16 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -1.21 Total: -59.74 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.79 Total: -16.01 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.34 -9.01 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970763362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.831 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds