Wall clock time and date at job start Tue Mar 31 2020 03:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46516 * 2 1 4 4 C 1.47015 * 111.00305 * 293.95116 * 3 2 1 5 5 C 1.53099 * 109.26232 * 182.39413 * 4 3 2 6 6 O 1.43015 * 109.25579 * 303.15553 * 5 4 3 7 7 C 1.43013 * 113.74175 * 58.66779 * 6 5 4 8 8 H 1.09006 * 109.50408 * 61.30647 * 7 6 5 9 9 C 1.50698 * 109.50810 * 181.39346 * 7 6 5 10 10 O 1.21276 * 120.00049 * 4.99726 * 9 7 6 11 11 N 1.34777 * 119.99820 * 184.99976 * 9 7 6 12 12 C 1.47425 * 125.65286 * 359.97438 * 11 9 7 13 13 C 1.54907 * 104.83360 * 155.90847 * 12 11 9 14 14 C 1.55154 * 101.58470 * 37.00605 * 13 12 11 15 15 H 1.09004 * 110.71599 * 83.04023 * 14 13 12 16 16 N 1.46498 * 110.71996 * 206.13736 * 14 13 12 17 17 C 1.36943 * 119.99752 * 273.26929 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 C 1.47032 * 125.64561 * 180.02562 * 11 9 7 26 26 C 1.47011 * 111.00449 * 57.58978 * 3 2 1 27 27 H 1.09000 * 109.47233 * 60.00307 * 1 2 3 28 28 H 1.09005 * 109.46630 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47169 * 299.99998 * 1 2 3 30 30 H 1.08994 * 109.47293 * 240.00531 * 2 1 3 31 31 H 1.09000 * 109.47233 * 119.99693 * 2 1 3 32 32 H 1.08996 * 109.50325 * 62.46145 * 4 3 2 33 33 H 1.08997 * 109.50487 * 302.33464 * 4 3 2 34 34 H 1.08990 * 109.50923 * 183.21896 * 5 4 3 35 35 H 1.09003 * 109.53655 * 63.10522 * 5 4 3 36 36 H 1.09004 * 110.36498 * 37.06625 * 12 11 9 37 37 H 1.09003 * 110.45527 * 274.79201 * 12 11 9 38 38 H 1.09007 * 111.00196 * 278.93303 * 13 12 11 39 39 H 1.08994 * 111.00551 * 155.08948 * 13 12 11 40 40 H 0.97001 * 120.00384 * 93.55285 * 16 14 13 41 41 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.88003 * 61.60527 * 25 11 9 43 43 H 1.09003 * 109.88091 * 300.44198 * 25 11 9 44 44 H 1.09005 * 109.50773 * 57.66871 * 26 3 2 45 45 H 1.08998 * 109.50577 * 297.54374 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6698 2.0675 -1.2543 5 6 2.2490 3.4846 -1.2367 6 8 1.7592 4.1801 -0.0871 7 6 2.0825 3.5434 1.1521 8 1 3.1657 3.4939 1.2641 9 6 1.4944 4.3338 2.2924 10 8 0.7853 5.2910 2.0646 11 7 1.7564 3.9770 3.5654 12 6 2.5973 2.8406 3.9835 13 6 3.0824 3.2091 5.4078 14 6 1.8299 3.9154 5.9906 15 1 1.1187 3.1841 6.3747 16 7 2.2111 4.8651 7.0388 17 6 2.3502 4.4376 8.3324 18 1 2.1833 3.3994 8.5789 19 6 2.7058 5.3386 9.3267 20 7 2.8400 4.9277 10.5698 21 14 2.9938 7.1344 8.9003 22 1 1.7175 7.8834 9.0236 23 1 3.9972 7.7095 9.8318 24 1 3.4959 7.2379 7.5066 25 6 1.2500 4.6560 4.7672 26 6 1.5016 2.1270 1.1586 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5854 2.1188 -1.3505 33 1 2.0849 1.5150 -2.0972 34 1 1.9441 4.0137 -2.1395 35 1 3.3371 3.4332 -1.1948 36 1 3.4472 2.7296 3.3101 37 1 2.0112 1.9218 4.0083 38 1 3.9319 3.8911 5.3669 39 1 3.3287 2.3149 5.9802 40 1 2.3609 5.7975 6.8174 41 1 3.0889 5.5572 11.2646 42 1 0.1611 4.6102 4.7878 43 1 1.5795 5.6951 4.7725 44 1 1.7940 1.6180 2.0771 45 1 0.4144 2.1792 1.1010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970763362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:36 Heat of formation + Delta-G solvation = -68.114865 kcal Electronic energy + Delta-G solvation = -25088.051896 eV Core-core repulsion = 21526.467474 eV Total energy + Delta-G solvation = -3561.584422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70440 -40.26447 -38.74005 -37.26714 -36.07618 -33.76292 -32.65143 -31.70047 -31.19316 -29.61147 -27.78617 -26.13689 -25.11379 -24.11629 -23.64840 -21.74322 -21.03981 -20.63308 -19.73888 -18.52045 -17.78623 -17.38888 -17.06150 -16.66905 -16.32343 -16.06864 -16.00731 -15.76028 -15.15646 -15.13230 -14.80595 -14.75616 -14.39149 -14.27812 -13.62451 -13.52957 -13.44171 -13.37037 -13.15189 -12.91089 -12.80114 -12.68806 -12.46424 -12.20440 -12.15245 -11.91784 -11.81328 -11.71453 -11.57866 -10.99692 -10.90549 -10.78564 -9.79720 -9.43208 -9.34309 -8.02911 -5.37186 1.37983 1.38724 1.40376 1.46484 1.54987 2.47418 2.69479 2.86257 3.27239 3.44430 3.50753 3.63764 3.72908 3.84729 3.91162 3.97310 4.09830 4.20406 4.22746 4.27801 4.34681 4.38852 4.39384 4.48751 4.56592 4.58679 4.70601 4.77932 4.80968 4.88177 4.94366 4.97627 5.02235 5.09069 5.24548 5.29068 5.40390 5.76948 5.82339 5.94929 5.99391 6.20783 6.38447 6.97200 7.05311 7.80180 7.97386 9.17904 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.003310 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.906970 B = 8457.384482 C = 9056.120268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.050 3.950 3 N -0.533 5.533 4 C 0.013 3.987 5 C 0.056 3.944 6 O -0.391 6.391 7 C 0.090 3.910 8 H 0.109 0.891 9 C 0.529 3.471 10 O -0.574 6.574 11 N -0.607 5.607 12 C 0.101 3.899 13 C -0.145 4.145 14 C 0.169 3.831 15 H 0.075 0.925 16 N -0.746 5.746 17 C -0.226 4.226 18 H 0.069 0.931 19 C -0.057 4.057 20 N -0.980 5.980 21 Si 0.945 3.055 22 H -0.282 1.282 23 H -0.296 1.296 24 H -0.257 1.257 25 C 0.107 3.893 26 C 0.031 3.969 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.364 0.636 41 H 0.258 0.742 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.111 0.889 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -11.994 -27.072 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.077 4.077 3 N -0.258 5.258 4 C -0.115 4.115 5 C -0.020 4.020 6 O -0.310 6.310 7 C 0.029 3.971 8 H 0.127 0.873 9 C 0.317 3.683 10 O -0.453 6.453 11 N -0.341 5.341 12 C -0.021 4.021 13 C -0.186 4.186 14 C 0.060 3.940 15 H 0.093 0.907 16 N -0.389 5.389 17 C -0.357 4.357 18 H 0.087 0.913 19 C -0.249 4.249 20 N -0.630 5.630 21 Si 0.774 3.226 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.181 1.181 25 C -0.017 4.017 26 C -0.098 4.098 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.197 0.803 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.097 -11.455 -27.079 29.402 hybrid contribution -0.754 1.298 0.482 1.577 sum -0.657 -10.157 -26.597 28.478 Atomic orbital electron populations 1.22428 0.98272 1.03083 1.01391 1.22287 0.92819 0.88060 1.04517 1.62510 1.58594 1.03074 1.01598 1.22900 0.99365 0.95654 0.93557 1.23016 0.99402 0.91794 0.87798 1.88083 1.78944 1.50142 1.13807 1.21820 1.00486 0.91154 0.83620 0.87349 1.20349 0.80609 0.84378 0.82946 1.90694 1.39786 1.30451 1.84384 1.48400 1.49988 1.31765 1.03960 1.22715 0.94775 0.88554 0.96044 1.23360 0.98742 1.01750 0.94719 1.21356 0.95323 0.91238 0.86070 0.90739 1.42733 1.83931 1.07674 1.04599 1.19008 1.37692 0.95227 0.83762 0.91310 1.25374 1.02537 1.01885 0.95127 1.69848 1.56433 1.35656 1.01059 0.85556 0.77612 0.81477 0.77984 1.20879 1.22245 1.18145 1.22062 0.98860 0.96537 0.84220 1.22682 0.97882 0.92268 0.96956 0.92983 0.90612 0.93606 0.88713 0.89292 0.94295 0.86882 0.86475 0.90944 0.87891 0.88388 0.91693 0.89152 0.80294 0.93326 0.91314 0.92845 0.87064 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 9.20 71.98 0.66 -1.54 16 2 C 0.05 0.51 6.10 86.31 0.53 1.03 16 3 N -0.53 -7.34 4.94 -895.23 -4.42 -11.76 16 4 C 0.01 0.17 5.33 86.31 0.46 0.63 16 5 C 0.06 0.87 7.01 72.02 0.50 1.37 16 6 O -0.39 -10.01 10.01 -130.02 -1.30 -11.31 16 7 C 0.09 2.05 2.57 29.88 0.08 2.12 16 8 H 0.11 2.06 7.61 -2.38 -0.02 2.04 16 9 C 0.53 16.06 7.24 87.66 0.63 16.70 16 10 O -0.57 -23.13 16.84 15.94 0.27 -22.86 16 11 N -0.61 -16.57 3.33 -811.77 -2.70 -19.27 16 12 C 0.10 2.01 5.34 86.85 0.46 2.48 16 13 C -0.15 -3.99 6.77 31.98 0.22 -3.77 16 14 C 0.17 5.81 3.59 46.18 0.17 5.98 16 15 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 16 N -0.75 -33.18 5.05 -317.33 -1.60 -34.78 16 17 C -0.23 -12.23 10.46 84.03 0.88 -11.35 16 18 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 19 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 20 N -0.98 -61.34 13.97 21.65 0.30 -61.04 16 21 Si 0.95 45.24 27.74 68.60 1.90 47.14 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 25 C 0.11 3.46 6.62 86.73 0.57 4.03 16 26 C 0.03 0.54 4.24 86.31 0.37 0.90 16 27 H 0.05 0.64 6.61 -2.39 -0.02 0.63 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.04 0.66 6.42 -2.39 -0.02 0.65 16 30 H 0.09 0.69 8.11 -2.39 -0.02 0.67 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.04 0.59 6.59 -2.39 -0.02 0.57 16 33 H 0.11 0.90 8.12 -2.39 -0.02 0.88 16 34 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 1.54 7.33 -2.39 -0.02 1.53 16 37 H 0.10 1.50 7.22 -2.39 -0.02 1.48 16 38 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.36 16.11 5.37 -92.71 -0.50 15.61 16 41 H 0.26 15.48 8.31 -92.70 -0.77 14.70 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 1.90 7.69 -2.39 -0.02 1.89 16 44 H 0.11 1.58 5.69 -2.38 -0.01 1.56 16 45 H 0.04 0.80 6.40 -2.39 -0.02 0.78 16 Total: -1.00 -74.18 347.20 -1.12 -75.30 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.43 Total: 22.83 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.00 Total: 15.75 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -8.42 Total: -126.86 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.03 Total: -34.17 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.14 kcal Total: -74.18 -1.12 -75.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970763362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.186 kcal (2) G-P(sol) polarization free energy of solvation -74.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds