Wall clock time and date at job start Tue Mar 31 2020 03:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47278 * 2 1 4 4 C 1.50697 * 109.47413 * 120.00262 * 2 1 3 5 5 O 1.21278 * 120.00130 * 93.34428 * 4 2 1 6 6 N 1.34780 * 119.99940 * 273.34705 * 4 2 1 7 7 C 1.47423 * 125.64685 * 355.03435 * 6 4 2 8 8 C 1.54909 * 104.82942 * 155.91385 * 7 6 4 9 9 C 1.55155 * 101.58276 * 37.01110 * 8 7 6 10 10 H 1.09000 * 110.72086 * 83.03640 * 9 8 7 11 11 N 1.46499 * 110.71795 * 206.13286 * 9 8 7 12 12 C 1.36934 * 120.00294 * 271.15722 * 11 9 8 13 13 H 1.08000 * 119.99949 * 0.02562 * 12 11 9 14 14 C 1.38807 * 120.00020 * 180.02562 * 12 11 9 15 15 N 1.31620 * 120.00254 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99899 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47137 * 90.00214 * 16 14 12 18 18 H 1.48501 * 109.47126 * 210.00074 * 16 14 12 19 19 H 1.48504 * 109.47019 * 330.00219 * 16 14 12 20 20 C 1.47316 * 125.61235 * 175.26622 * 6 4 2 21 21 N 1.46900 * 109.46806 * 240.00245 * 2 1 3 22 22 C 1.47013 * 111.00276 * 176.75029 * 21 2 1 23 23 C 1.53098 * 109.26200 * 177.60535 * 22 21 2 24 24 O 1.43019 * 109.25692 * 56.84894 * 23 22 21 25 25 C 1.43018 * 113.73596 * 301.33166 * 24 23 22 26 26 C 1.47016 * 111.00165 * 53.11134 * 21 2 1 27 27 H 1.08998 * 109.46923 * 172.99756 * 1 2 3 28 28 H 1.09002 * 109.46817 * 292.99176 * 1 2 3 29 29 H 1.08989 * 109.47226 * 52.99158 * 1 2 3 30 30 H 1.09000 * 110.36671 * 37.07672 * 7 6 4 31 31 H 1.09001 * 110.37022 * 274.75633 * 7 6 4 32 32 H 1.08997 * 111.00194 * 278.93276 * 8 7 6 33 33 H 1.08998 * 111.03303 * 155.10014 * 8 7 6 34 34 H 0.97002 * 119.99864 * 91.15694 * 11 9 8 35 35 H 0.97000 * 119.99702 * 179.97438 * 15 14 12 36 36 H 1.09003 * 110.06660 * 61.68057 * 20 6 4 37 37 H 1.08999 * 109.85160 * 300.41131 * 20 6 4 38 38 H 1.08996 * 109.50760 * 297.54569 * 22 21 2 39 39 H 1.09003 * 109.50433 * 57.66933 * 22 21 2 40 40 H 1.09002 * 109.50268 * 296.91715 * 23 22 21 41 41 H 1.09001 * 109.50607 * 176.78614 * 23 22 21 42 42 H 1.09000 * 109.50439 * 298.72936 * 25 24 23 43 43 H 1.09003 * 109.50222 * 178.60541 * 25 24 23 44 44 H 1.08995 * 109.50845 * 302.33183 * 26 21 2 45 45 H 1.09003 * 109.50051 * 62.42151 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2924 -1.8941 1.1835 6 7 2.1929 -0.0304 2.3829 7 6 2.0153 1.4230 2.5548 8 6 1.6961 1.6082 4.0593 9 6 2.6099 0.5341 4.7062 10 1 3.6241 0.9142 4.8296 11 7 2.0630 0.0947 5.9923 12 6 2.4007 0.7570 7.1422 13 1 3.0700 1.6037 7.1010 14 6 1.8829 0.3403 8.3608 15 7 1.0677 -0.6918 8.4111 16 14 2.3442 1.2435 9.9296 17 1 1.3726 2.3397 10.1736 18 1 2.3182 0.2956 11.0724 19 1 3.7085 1.8131 9.7899 20 6 2.5794 -0.6164 3.6781 21 7 2.0196 -0.6925 -1.1995 22 6 3.4872 -0.6451 -1.2731 23 6 3.9567 -1.4275 -2.5025 24 8 3.3381 -0.8841 -3.6719 25 6 1.9087 -0.9149 -3.6343 26 6 1.4185 -0.1274 -2.4163 27 1 -0.3633 -1.0200 -0.1253 28 1 -0.3633 0.4014 0.9461 29 1 -0.3633 0.6185 -0.8205 30 1 1.1852 1.7786 1.9443 31 1 2.9325 1.9508 2.2938 32 1 0.6455 1.4021 4.2640 33 1 1.9689 2.6081 4.3969 34 1 1.4616 -0.6655 6.0292 35 1 0.7061 -0.9832 9.2627 36 1 3.5666 -1.0723 3.6026 37 1 1.8456 -1.3638 3.9799 38 1 3.8143 0.3914 -1.3545 39 1 3.9113 -1.0917 -0.3737 40 1 3.6762 -2.4754 -2.3959 41 1 5.0399 -1.3473 -2.5931 42 1 1.5688 -1.9480 -3.5607 43 1 1.5109 -0.4641 -4.5435 44 1 0.3326 -0.1960 -2.3515 45 1 1.7120 0.9177 -2.5157 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970887221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:52 Heat of formation + Delta-G solvation = -72.167579 kcal Electronic energy + Delta-G solvation = -24926.591949 eV Core-core repulsion = 21364.831789 eV Total energy + Delta-G solvation = -3561.760161 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55908 -40.25664 -38.73046 -36.90298 -35.93488 -33.47396 -32.53839 -31.97182 -30.94992 -29.35379 -27.72807 -26.16003 -25.17365 -24.39370 -23.35688 -21.69723 -21.36875 -20.11060 -19.35174 -18.38985 -17.91476 -17.19493 -17.07758 -16.49732 -16.42192 -16.03334 -15.96130 -15.56785 -15.37016 -15.12764 -14.92948 -14.71253 -14.27838 -13.92326 -13.66669 -13.37260 -13.19457 -13.14170 -12.99141 -12.88407 -12.74391 -12.63406 -12.36182 -12.34643 -12.23896 -12.14233 -11.76270 -11.70487 -11.51956 -10.95009 -10.87997 -10.64603 -9.71627 -9.41631 -9.05683 -7.95591 -5.26123 1.48948 1.50499 1.53024 1.58835 1.78881 2.55934 2.67836 2.93307 3.32455 3.41062 3.72841 3.80503 3.89255 3.90820 3.98154 4.01257 4.04232 4.15846 4.25899 4.30183 4.31831 4.37268 4.49948 4.53994 4.62436 4.64363 4.67843 4.75675 4.77859 4.82247 4.90309 4.96668 4.98231 5.16111 5.17609 5.24203 5.42583 5.52954 5.76015 5.90273 6.14492 6.24817 6.51298 7.11826 7.31249 8.02853 8.26488 9.27946 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.040235 B = 0.002816 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.745944 B = 9939.841555 C =10056.597971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.083 0.917 4 C 0.525 3.475 5 O -0.571 6.571 6 N -0.615 5.615 7 C 0.104 3.896 8 C -0.143 4.143 9 C 0.166 3.834 10 H 0.070 0.930 11 N -0.731 5.731 12 C -0.239 4.239 13 H 0.084 0.916 14 C -0.076 4.076 15 N -0.972 5.972 16 Si 0.975 3.025 17 H -0.286 1.286 18 H -0.300 1.300 19 H -0.267 1.267 20 C 0.111 3.889 21 N -0.536 5.536 22 C 0.020 3.980 23 C 0.070 3.930 24 O -0.400 6.400 25 C 0.060 3.940 26 C 0.017 3.983 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.372 0.628 35 H 0.251 0.749 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 6.836 -24.807 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 H 0.101 0.899 4 C 0.314 3.686 5 O -0.449 6.449 6 N -0.349 5.349 7 C -0.018 4.018 8 C -0.184 4.184 9 C 0.056 3.944 10 H 0.088 0.912 11 N -0.371 5.371 12 C -0.370 4.370 13 H 0.102 0.898 14 C -0.268 4.268 15 N -0.622 5.622 16 Si 0.804 3.196 17 H -0.213 1.213 18 H -0.227 1.227 19 H -0.192 1.192 20 C -0.013 4.013 21 N -0.262 5.262 22 C -0.108 4.108 23 C -0.007 4.007 24 O -0.319 6.319 25 C -0.017 4.017 26 C -0.110 4.110 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.073 0.927 43 H 0.142 0.858 44 H 0.127 0.873 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.064 5.868 -24.907 25.611 hybrid contribution 0.023 0.251 1.753 1.771 sum 1.087 6.119 -23.153 23.973 Atomic orbital electron populations 1.21841 0.90181 1.03540 1.04157 1.21569 0.98389 0.96011 0.87273 0.89891 1.20806 0.77043 0.86795 0.83977 1.90675 1.51859 1.17547 1.84844 1.48671 1.67922 1.10263 1.08051 1.22570 1.02974 0.79112 0.97126 1.23353 1.00444 1.00906 0.93715 1.21381 0.96730 0.92143 0.84152 0.91234 1.42549 1.55718 1.36801 1.01999 1.19633 1.22178 1.09425 0.85802 0.89817 1.25604 1.00650 0.99520 1.01071 1.69835 1.37589 1.29451 1.25320 0.85123 0.78225 0.77203 0.79077 1.21268 1.22713 1.19151 1.22028 0.99221 0.96707 0.83335 1.61913 1.06659 1.55934 1.01722 1.22753 0.88097 1.00014 0.99961 1.22630 0.98582 0.96359 0.83144 1.87952 1.20501 1.83394 1.40045 1.22866 0.80137 1.00305 0.98395 1.22976 1.01690 0.97519 0.88788 0.92309 0.91132 0.88115 0.88144 0.89137 0.92309 0.89137 0.79645 0.94063 0.92307 0.93822 0.93239 0.91539 0.93077 0.86870 0.92730 0.85779 0.87296 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.42 71.98 0.61 -1.76 16 2 C 0.08 1.64 1.80 44.17 0.08 1.72 16 3 H 0.08 1.37 7.17 -2.39 -0.02 1.35 16 4 C 0.52 15.79 6.03 87.66 0.53 16.32 16 5 O -0.57 -22.37 16.08 -3.02 -0.05 -22.41 16 6 N -0.61 -17.93 3.33 -811.04 -2.70 -20.63 16 7 C 0.10 2.27 6.36 86.86 0.55 2.82 16 8 C -0.14 -4.20 6.77 31.99 0.22 -3.99 16 9 C 0.17 6.13 3.59 46.18 0.17 6.30 16 10 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 11 N -0.73 -35.73 5.24 -317.33 -1.66 -37.39 16 12 C -0.24 -12.69 9.97 84.03 0.84 -11.85 16 13 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 14 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 15 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 16 Si 0.97 44.99 29.55 68.60 2.03 47.01 16 17 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 C 0.11 3.99 6.65 86.67 0.58 4.57 16 21 N -0.54 -11.42 4.28 -874.37 -3.75 -15.17 16 22 C 0.02 0.43 5.36 86.31 0.46 0.89 16 23 C 0.07 1.36 7.01 72.02 0.50 1.87 16 24 O -0.40 -7.89 10.83 -148.98 -1.61 -9.50 16 25 C 0.06 0.88 7.01 72.01 0.50 1.38 16 26 C 0.02 0.25 5.17 86.31 0.45 0.70 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.21 7.76 -2.39 -0.02 1.19 16 29 H 0.10 1.05 6.71 -2.39 -0.02 1.03 16 30 H 0.10 1.62 7.00 -2.39 -0.02 1.61 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.37 20.08 7.53 -92.71 -0.70 19.38 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.79 7.70 -2.39 -0.02 1.78 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.77 6.56 -2.39 -0.02 1.76 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.11 1.20 6.23 -2.39 -0.01 1.19 16 45 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -71.31 353.78 -1.24 -72.55 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.28 Total: 29.16 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 5.95 Total: 15.17 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -7.83 Total: -131.97 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.66 Total: -31.92 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -71.31 -1.24 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970887221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.383 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds