Wall clock time and date at job start Tue Mar 31 2020 04:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99833 * 2 1 4 4 H 1.08004 * 119.99571 * 203.93515 * 3 2 1 5 5 C 1.38809 * 120.00273 * 23.93281 * 3 2 1 6 6 N 1.31622 * 120.00139 * 9.91947 * 5 3 2 7 7 Si 1.86802 * 120.00200 * 189.91229 * 5 3 2 8 8 H 1.48503 * 109.47033 * 60.00123 * 7 5 3 9 9 H 1.48494 * 109.47180 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47151 * 300.00341 * 7 5 3 11 11 C 1.46496 * 119.99859 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.88202 * 180.70375 * 11 2 1 13 13 C 1.55158 * 111.00584 * 304.58712 * 11 2 1 14 14 C 1.54325 * 102.94027 * 153.61408 * 13 11 2 15 15 N 1.47016 * 107.27163 * 337.80803 * 14 13 11 16 16 C 1.34781 * 125.64895 * 178.89939 * 15 14 13 17 17 O 1.21272 * 120.00051 * 174.81311 * 16 15 14 18 18 C 1.50703 * 119.99822 * 354.81386 * 16 15 14 19 19 H 1.08999 * 109.50804 * 31.28074 * 18 16 15 20 20 C 1.53101 * 109.50288 * 271.15767 * 18 16 15 21 21 O 1.43017 * 109.25661 * 183.21576 * 20 18 16 22 22 C 1.43016 * 113.73547 * 58.67151 * 21 20 18 23 23 C 1.53100 * 109.25716 * 301.32338 * 22 21 20 24 24 N 1.47012 * 109.50750 * 151.37730 * 18 16 15 25 25 C 1.46904 * 110.99660 * 302.32255 * 24 18 16 26 26 C 1.47421 * 108.70621 * 358.93989 * 15 14 13 27 27 H 1.09001 * 109.47510 * 274.90656 * 1 2 3 28 28 H 1.09008 * 109.46575 * 34.90266 * 1 2 3 29 29 H 1.08996 * 109.46942 * 154.89742 * 1 2 3 30 30 H 0.97001 * 120.00002 * 179.97438 * 6 5 3 31 31 H 1.09002 * 110.71749 * 271.97289 * 13 11 2 32 32 H 1.08998 * 110.71749 * 35.24797 * 13 11 2 33 33 H 1.09004 * 109.88116 * 97.22232 * 14 13 11 34 34 H 1.08998 * 109.87962 * 218.23399 * 14 13 11 35 35 H 1.09004 * 109.50661 * 303.14951 * 20 18 16 36 36 H 1.08993 * 109.51152 * 63.27984 * 20 18 16 37 37 H 1.09001 * 109.50387 * 181.39694 * 22 21 20 38 38 H 1.08992 * 109.54761 * 61.28582 * 22 21 20 39 39 H 1.08996 * 109.51360 * 296.92107 * 23 22 21 40 40 H 1.09006 * 109.50281 * 176.78665 * 23 22 21 41 41 H 1.09001 * 109.46917 * 66.49552 * 25 24 18 42 42 H 1.08995 * 109.46826 * 186.49350 * 25 24 18 43 43 H 1.09003 * 109.47054 * 306.49570 * 25 24 18 44 44 H 1.09010 * 110.36703 * 265.29349 * 26 15 14 45 45 H 1.08996 * 110.36960 * 142.97365 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1601 1.2261 -0.3795 5 6 1.5452 2.3364 0.4876 6 7 0.3969 2.2565 1.1261 7 14 2.3613 3.9981 0.2380 8 1 2.5136 4.2614 -1.2155 9 1 1.5207 5.0591 0.8484 10 1 3.6989 3.9945 0.8832 11 6 2.1975 -1.2687 0.0006 12 1 3.2736 -1.0960 0.0130 13 6 1.7635 -2.1610 1.1934 14 6 2.0566 -3.5874 0.6826 15 7 2.0791 -3.5290 -0.7862 16 6 2.3243 -4.5672 -1.6100 17 8 2.2251 -4.4255 -2.8103 18 6 2.7218 -5.9042 -1.0394 19 1 2.2534 -6.0376 -0.0642 20 6 4.2442 -5.9634 -0.8885 21 8 4.6215 -7.2600 -0.4176 22 6 4.2099 -8.3267 -1.2768 23 6 2.6872 -8.2915 -1.4315 24 7 2.2824 -6.9751 -1.9458 25 6 0.8306 -6.9183 -2.1629 26 6 1.7899 -2.1466 -1.2089 27 1 -0.3634 0.0879 1.0239 28 1 -0.3633 0.8429 -0.5881 29 1 -0.3633 -0.9306 -0.4360 30 1 -0.0253 3.0604 1.4672 31 1 2.3595 -1.9382 2.0785 32 1 0.7008 -2.0365 1.4014 33 1 3.0245 -3.9230 1.0551 34 1 1.2743 -4.2688 1.0169 35 1 4.7132 -5.7762 -1.8544 36 1 4.5687 -5.2078 -0.1731 37 1 4.5096 -9.2803 -0.8422 38 1 4.6779 -8.2090 -2.2541 39 1 2.2187 -8.4635 -0.4625 40 1 2.3744 -9.0672 -2.1306 41 1 0.5800 -6.0079 -2.7074 42 1 0.5157 -7.7864 -2.7419 43 1 0.3191 -6.9185 -1.2003 44 1 0.7273 -2.0294 -1.4218 45 1 2.3841 -1.8856 -2.0846 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971380440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:18 Heat of formation + Delta-G solvation = -30.087242 kcal Electronic energy + Delta-G solvation = -25401.946670 eV Core-core repulsion = 21842.011249 eV Total energy + Delta-G solvation = -3559.935420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63141 -39.03685 -37.42482 -35.72850 -34.84335 -32.15076 -31.29337 -29.81233 -29.07778 -27.88449 -26.09712 -25.10671 -24.43142 -23.39690 -22.32603 -21.03630 -19.35080 -19.00946 -17.26881 -17.11605 -16.70408 -16.53456 -15.84259 -15.61165 -15.15718 -14.87913 -14.58721 -14.05815 -14.03680 -13.73470 -13.44406 -13.26555 -12.86527 -12.57159 -12.51957 -12.42158 -12.31517 -11.88159 -11.87500 -11.49193 -11.37661 -10.95928 -10.94206 -10.81501 -10.53238 -10.49227 -10.29662 -10.12737 -9.92533 -9.91413 -9.53078 -8.64815 -8.61294 -8.39247 -6.83414 -5.79071 -3.28209 2.61951 2.94312 3.36148 3.41598 3.42685 3.47647 3.70910 4.42955 4.47980 4.54117 4.66865 4.77764 4.89266 4.92125 4.98563 5.21886 5.25024 5.26956 5.30385 5.34423 5.41108 5.46492 5.52559 5.54171 5.66069 5.71556 5.83434 5.87272 5.97503 6.24303 6.34061 6.44168 6.55708 6.61494 6.66496 6.74977 6.79550 6.84119 7.32599 7.66851 7.70499 7.75101 8.28295 8.33612 9.16135 9.77545 10.26265 11.25301 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.003277 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.643546 B = 8543.526672 C = 8758.887820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.151 4.151 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.532 3.468 17 O -0.524 6.524 18 C 0.036 3.964 19 H 0.069 0.931 20 C 0.078 3.922 21 O -0.379 6.379 22 C 0.060 3.940 23 C 0.018 3.982 24 N -0.520 5.520 25 C 0.020 3.980 26 C 0.086 3.914 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.000 1.000 30 H 0.254 0.746 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.069 0.931 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.595 -20.219 -1.186 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.191 4.191 14 C -0.023 4.023 15 N -0.347 5.347 16 C 0.318 3.682 17 O -0.399 6.399 18 C -0.077 4.077 19 H 0.087 0.913 20 C 0.000 4.000 21 O -0.297 6.297 22 C -0.017 4.017 23 C -0.110 4.110 24 N -0.246 5.246 25 C -0.127 4.127 26 C -0.038 4.038 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.751 -19.972 -2.093 20.429 hybrid contribution -0.417 0.788 0.609 1.080 sum 3.334 -19.184 -1.484 19.528 Atomic orbital electron populations 1.20829 0.82397 0.95595 0.99582 1.43793 1.01884 0.99812 1.85051 1.19187 0.98974 0.85541 1.35431 0.91274 1.25065 0.97586 0.98700 0.97897 1.70046 1.17967 1.27642 1.39436 0.86287 0.78585 0.83439 0.77913 1.20945 1.21598 1.20838 1.21414 0.96424 0.85845 0.90020 0.90295 1.23231 1.02969 0.92231 1.00662 1.22109 1.00680 0.99641 0.79909 1.48537 1.69153 1.09786 1.07237 1.19716 0.77900 0.84245 0.86358 1.90699 1.51499 1.83255 1.14457 1.22319 0.98869 0.91012 0.95450 0.91344 1.22524 0.90526 0.85569 1.01361 1.88017 1.78393 1.14560 1.48697 1.22726 0.92884 0.90815 0.95285 1.22864 0.97169 0.91449 0.99499 1.61966 1.15345 1.01703 1.45539 1.22496 0.85912 1.04094 1.00239 1.23017 1.01290 0.79208 1.00272 0.94878 0.93723 0.98173 0.93579 0.90370 0.90509 0.91794 0.92271 0.91273 0.87687 0.88163 0.91894 0.93808 0.89115 0.89918 0.90987 0.95638 0.91304 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.66 59.85 0.46 4.25 16 2 N -0.59 -13.99 2.96 -171.03 -0.51 -14.50 16 3 C -0.26 -6.95 9.61 -15.06 -0.14 -7.10 16 4 H 0.07 1.79 7.84 -52.48 -0.41 1.38 16 5 C 0.01 0.17 5.16 -17.43 -0.09 0.08 16 6 N -0.91 -25.61 10.60 55.49 0.59 -25.02 16 7 Si 0.91 21.38 29.57 -169.99 -5.03 16.35 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.17 3.35 3.54 -65.78 -0.23 3.12 16 12 H 0.08 1.53 7.95 -51.93 -0.41 1.12 16 13 C -0.15 -2.43 6.52 -24.90 -0.16 -2.60 16 14 C 0.10 1.32 6.04 -3.07 -0.02 1.30 16 15 N -0.61 -9.50 3.33 -170.52 -0.57 -10.07 16 16 C 0.53 8.34 6.07 -10.98 -0.07 8.28 16 17 O -0.52 -10.06 15.70 5.56 0.09 -9.97 16 18 C 0.04 0.45 1.98 -68.75 -0.14 0.31 16 19 H 0.07 0.81 7.18 -51.93 -0.37 0.43 16 20 C 0.08 0.90 6.27 37.21 0.23 1.14 16 21 O -0.38 -4.26 10.83 -35.23 -0.38 -4.64 16 22 C 0.06 0.52 7.01 37.21 0.26 0.78 16 23 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 24 N -0.52 -6.28 4.53 -235.96 -1.07 -7.35 16 25 C 0.02 0.23 9.12 60.07 0.55 0.78 16 26 C 0.09 1.56 6.44 -2.53 -0.02 1.54 16 27 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 28 H 0.04 1.15 7.31 -51.92 -0.38 0.77 16 29 H 0.00 0.00 6.24 -51.93 -0.32 -0.33 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.33 7.16 -51.93 -0.37 0.96 16 33 H 0.06 0.72 7.97 -51.93 -0.41 0.31 16 34 H 0.06 0.70 8.00 -51.93 -0.42 0.28 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 1.10 7.97 -51.93 -0.41 0.69 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 41 H 0.08 1.16 6.45 -51.93 -0.33 0.82 16 42 H 0.07 0.67 8.04 -51.93 -0.42 0.26 16 43 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 44 H 0.07 1.32 6.22 -51.92 -0.32 1.00 16 45 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -30.88 348.89 -8.49 -39.37 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.48 Total: -1.46 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 0.61 Total: 12.04 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -1.55 Total: -56.94 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.29 Total: -14.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.88 -8.49 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971380440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.282 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds