Wall clock time and date at job start Tue Mar 31 2020 04:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00489 * 2 1 4 4 H 1.07998 * 120.00589 * 199.33116 * 3 2 1 5 5 C 1.38817 * 119.99609 * 19.33143 * 3 2 1 6 6 N 1.31616 * 119.99975 * 14.76816 * 5 3 2 7 7 Si 1.86802 * 119.99875 * 194.76834 * 5 3 2 8 8 H 1.48497 * 109.47048 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47115 * 120.00106 * 7 5 3 10 10 H 1.48507 * 109.46712 * 240.00131 * 7 5 3 11 11 C 1.46499 * 119.99775 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.64306 * 176.85734 * 11 2 1 13 13 C 1.55160 * 110.72398 * 53.52113 * 11 2 1 14 14 C 1.55129 * 101.48669 * 205.97341 * 13 11 2 15 15 N 1.47427 * 104.72360 * 37.29087 * 14 13 11 16 16 C 1.34773 * 125.64515 * 155.81739 * 15 14 13 17 17 O 1.21280 * 119.99849 * 179.69408 * 16 15 14 18 18 C 1.50702 * 120.00432 * 359.69542 * 16 15 14 19 19 H 1.08998 * 109.53698 * 327.11598 * 18 16 15 20 20 C 1.53094 * 109.50748 * 87.22190 * 18 16 15 21 21 O 1.43018 * 109.25947 * 176.78572 * 20 18 16 22 22 C 1.43009 * 113.73482 * 301.33050 * 21 20 18 23 23 C 1.53100 * 109.26326 * 58.67144 * 22 21 20 24 24 N 1.47009 * 109.50798 * 207.00575 * 18 16 15 25 25 C 1.46901 * 111.00059 * 57.67241 * 24 18 16 26 26 C 1.47020 * 108.70377 * 335.55386 * 15 14 13 27 27 H 1.08996 * 109.47428 * 275.20000 * 1 2 3 28 28 H 1.09011 * 109.46840 * 35.19412 * 1 2 3 29 29 H 1.08998 * 109.47368 * 155.19698 * 1 2 3 30 30 H 0.97001 * 119.99622 * 180.02562 * 6 5 3 31 31 H 1.09009 * 110.99959 * 324.20821 * 13 11 2 32 32 H 1.08995 * 111.00652 * 88.01999 * 13 11 2 33 33 H 1.09003 * 110.49637 * 278.45052 * 14 13 11 34 34 H 1.08999 * 110.34317 * 156.05485 * 14 13 11 35 35 H 1.09005 * 109.50768 * 56.84982 * 20 18 16 36 36 H 1.09001 * 109.54625 * 296.74501 * 20 18 16 37 37 H 1.08996 * 109.51079 * 298.72742 * 22 21 20 38 38 H 1.09003 * 109.50381 * 178.60456 * 22 21 20 39 39 H 1.09000 * 109.51004 * 183.21199 * 23 22 21 40 40 H 1.09000 * 109.50182 * 63.07783 * 23 22 21 41 41 H 1.08997 * 109.47102 * 178.21686 * 25 24 18 42 42 H 1.09000 * 109.47314 * 58.21846 * 25 24 18 43 43 H 1.09006 * 109.47164 * 298.21675 * 25 24 18 44 44 H 1.08999 * 109.88095 * 120.70021 * 26 15 14 45 45 H 1.08992 * 109.88285 * 241.86868 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1841 1.2122 -0.3096 5 6 1.5144 2.3541 0.3980 6 7 0.3688 2.2933 1.0432 7 14 2.2853 4.0126 0.0177 8 1 3.5633 3.8091 -0.7105 9 1 1.3566 4.8088 -0.8242 10 1 2.5490 4.7383 1.2863 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0923 -0.0564 13 6 1.7247 -2.1751 -1.1678 14 6 2.0551 -3.5868 -0.6161 15 7 1.7499 -3.5071 0.8240 16 6 1.4404 -4.5496 1.6202 17 8 1.2120 -4.3668 2.7972 18 6 1.3780 -5.9423 1.0479 19 1 1.0304 -5.8972 0.0159 20 6 2.7712 -6.5755 1.0908 21 8 2.6921 -7.9224 0.6166 22 6 1.7972 -8.7460 1.3690 23 6 0.3940 -8.1348 1.3289 24 7 0.4497 -6.7588 1.8434 25 6 -0.8887 -6.1541 1.8751 26 6 1.8454 -2.1030 1.2492 27 1 -0.3634 0.0931 1.0234 28 1 -0.3633 0.8399 -0.5924 29 1 -0.3634 -0.9328 -0.4311 30 1 -0.0753 3.1097 1.3210 31 1 0.6548 -2.0608 -1.3426 32 1 2.2910 -1.9695 -2.0762 33 1 3.1092 -3.8190 -0.7682 34 1 1.4272 -4.3376 -1.0959 35 1 3.1414 -6.5718 2.1161 36 1 3.4504 -6.0057 0.4567 37 1 2.1390 -8.8055 2.4022 38 1 1.7712 -9.7457 0.9355 39 1 -0.2792 -8.7280 1.9479 40 1 0.0307 -8.1247 0.3013 41 1 -1.5633 -6.7943 2.4435 42 1 -1.2626 -6.0456 0.8570 43 1 -0.8334 -5.1737 2.3483 44 1 0.8901 -1.7736 1.6576 45 1 2.6287 -1.9953 1.9994 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971380442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:20 Heat of formation + Delta-G solvation = -27.269906 kcal Electronic energy + Delta-G solvation = -25497.527374 eV Core-core repulsion = 21937.714122 eV Total energy + Delta-G solvation = -3559.813251 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.60434 -39.01506 -37.41420 -35.69422 -34.83304 -32.14667 -31.29253 -29.75144 -29.05461 -27.87360 -26.09506 -25.09813 -24.39220 -23.34505 -22.41681 -21.03935 -19.29575 -18.99227 -17.24023 -17.10236 -16.69414 -16.51553 -15.85442 -15.54376 -15.14765 -14.84883 -14.72024 -14.06818 -14.01018 -13.66835 -13.43770 -13.26873 -12.79805 -12.57713 -12.45508 -12.31801 -12.18802 -11.86218 -11.85170 -11.54750 -11.42707 -10.97670 -10.92963 -10.83564 -10.60017 -10.47704 -10.29560 -10.10734 -9.90901 -9.84767 -9.48217 -8.61289 -8.58509 -8.34476 -6.89382 -5.79152 -3.23752 2.68941 2.99011 3.34996 3.42306 3.44307 3.48741 3.73303 4.42887 4.50293 4.56189 4.68906 4.76180 4.89485 4.93861 4.95688 5.21367 5.25543 5.30669 5.32942 5.36096 5.41329 5.46858 5.51768 5.55081 5.67393 5.74387 5.84765 5.91242 5.95061 6.29127 6.31635 6.45857 6.55787 6.65366 6.70373 6.77381 6.81738 6.82404 7.32360 7.66958 7.74902 7.75971 8.29228 8.36533 9.15155 9.78161 10.25368 11.25608 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034413 B = 0.003356 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.448193 B = 8340.770100 C = 8647.998910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.073 0.927 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.098 3.902 15 N -0.612 5.612 16 C 0.529 3.471 17 O -0.522 6.522 18 C 0.035 3.965 19 H 0.069 0.931 20 C 0.078 3.922 21 O -0.379 6.379 22 C 0.060 3.940 23 C 0.018 3.982 24 N -0.520 5.520 25 C 0.020 3.980 26 C 0.087 3.913 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.001 0.999 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -20.256 -3.646 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.091 0.909 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.025 4.025 15 N -0.347 5.347 16 C 0.315 3.685 17 O -0.398 6.398 18 C -0.077 4.077 19 H 0.087 0.913 20 C 0.000 4.000 21 O -0.297 6.297 22 C -0.017 4.017 23 C -0.110 4.110 24 N -0.245 5.245 25 C -0.128 4.128 26 C -0.037 4.037 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.144 -20.107 -2.565 20.303 hybrid contribution -0.320 1.088 -0.715 1.340 sum 0.824 -19.020 -3.280 19.318 Atomic orbital electron populations 1.20816 0.82323 0.95620 0.99598 1.43966 1.01974 0.99926 1.84786 1.19295 0.96606 0.84539 1.38582 0.90934 1.24991 0.97683 0.98486 0.98417 1.70112 1.17896 1.26737 1.40137 0.86155 0.78506 0.84050 0.77631 1.20261 1.21584 1.21713 1.21350 0.96431 0.85914 0.90072 0.90253 1.23385 1.02836 0.93042 0.99999 1.22432 1.00132 0.99213 0.80748 1.48632 1.68056 1.07960 1.10020 1.19733 0.77801 0.84821 0.86157 1.90711 1.48570 1.84826 1.15665 1.22314 0.96576 0.92253 0.96568 0.91320 1.22518 0.93493 0.82695 1.01250 1.88005 1.64282 1.20941 1.56518 1.22726 0.87961 0.93994 0.96998 1.22857 0.98800 0.90063 0.99258 1.61949 1.09590 1.01371 1.51625 1.22504 0.88425 1.01809 1.00037 1.22966 1.02348 0.78349 1.00056 0.95192 0.93472 0.98048 0.93665 0.90366 0.90282 0.91350 0.91519 0.91347 0.87803 0.91912 0.88172 0.89113 0.93830 0.90934 0.95678 0.89787 0.90915 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.80 59.85 0.47 4.31 16 2 N -0.59 -14.02 2.94 -171.39 -0.50 -14.52 16 3 C -0.26 -6.91 9.65 -15.06 -0.15 -7.05 16 4 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 5 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 6 N -0.90 -25.96 10.59 55.49 0.59 -25.37 16 7 Si 0.91 21.40 29.58 -169.99 -5.03 16.37 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.17 3.30 3.44 -66.09 -0.23 3.08 16 12 H 0.08 1.49 7.91 -51.93 -0.41 1.08 16 13 C -0.15 -2.31 6.60 -24.46 -0.16 -2.47 16 14 C 0.10 1.24 6.69 -2.41 -0.02 1.23 16 15 N -0.61 -9.72 3.32 -170.38 -0.57 -10.29 16 16 C 0.53 8.61 6.07 -10.99 -0.07 8.54 16 17 O -0.52 -10.53 15.63 5.56 0.09 -10.45 16 18 C 0.04 0.45 1.92 -68.76 -0.13 0.32 16 19 H 0.07 0.83 6.63 -51.93 -0.34 0.48 16 20 C 0.08 0.90 6.27 37.21 0.23 1.13 16 21 O -0.38 -4.24 10.83 -35.23 -0.38 -4.62 16 22 C 0.06 0.53 7.01 37.21 0.26 0.79 16 23 C 0.02 0.17 5.66 -3.71 -0.02 0.15 16 24 N -0.52 -6.54 4.53 -235.97 -1.07 -7.60 16 25 C 0.02 0.25 9.16 60.07 0.55 0.80 16 26 C 0.09 1.66 6.51 -3.06 -0.02 1.64 16 27 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 28 H 0.05 1.22 7.14 -51.92 -0.37 0.85 16 29 H 0.00 0.02 6.03 -51.93 -0.31 -0.29 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 31 H 0.08 1.27 6.05 -51.92 -0.31 0.96 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.72 6.79 -51.93 -0.35 0.37 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 1.28 6.23 -51.93 -0.32 0.96 16 44 H 0.07 1.61 7.13 -51.93 -0.37 1.24 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -31.58 347.51 -8.38 -39.96 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.38 Total: -1.18 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 0.63 Total: 12.46 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -1.55 Total: -57.79 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.29 Total: -15.06 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.58 -8.38 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971380442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.692 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds