Wall clock time and date at job start Tue Mar 31 2020 04:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47009 * 111.00306 * 2 1 4 4 C 1.53096 * 109.26042 * 182.38786 * 3 2 1 5 5 O 1.43011 * 109.25866 * 303.15316 * 4 3 2 6 6 C 1.43013 * 113.74234 * 58.66674 * 5 4 3 7 7 C 1.47020 * 110.99598 * 123.63248 * 2 1 3 8 8 H 1.08998 * 109.54436 * 297.56626 * 7 2 1 9 9 C 1.50694 * 109.50551 * 57.67314 * 7 2 1 10 10 O 1.21288 * 120.00249 * 26.13240 * 9 7 2 11 11 N 1.34781 * 119.99955 * 206.13156 * 9 7 2 12 12 C 1.48212 * 119.97013 * 355.55831 * 11 9 7 13 13 C 1.47141 * 110.34194 * 102.51168 * 12 11 9 14 14 C 1.53795 * 111.83859 * 58.29800 * 13 12 11 15 15 N 1.43465 * 107.96002 * 281.66499 * 14 13 12 16 16 C 1.36936 * 118.93907 * 273.61089 * 15 14 13 17 17 H 1.08001 * 120.00059 * 36.15827 * 16 15 14 18 18 C 1.38815 * 120.00023 * 216.16274 * 16 15 14 19 19 N 1.31617 * 119.99913 * 23.70108 * 18 16 15 20 20 Si 1.86800 * 120.00076 * 203.98202 * 18 16 15 21 21 H 1.48494 * 109.47167 * 179.72071 * 20 18 16 22 22 H 1.48498 * 109.46972 * 299.72467 * 20 18 16 23 23 H 1.48503 * 109.47097 * 59.71983 * 20 18 16 24 24 C 1.48856 * 122.11853 * 93.89339 * 15 14 13 25 25 C 1.43623 * 119.96935 * 175.58146 * 11 9 7 26 26 H 1.08999 * 109.47266 * 298.63718 * 1 2 3 27 27 H 1.09001 * 109.46730 * 58.63548 * 1 2 3 28 28 H 1.08998 * 109.47623 * 178.63161 * 1 2 3 29 29 H 1.09003 * 109.50830 * 62.45631 * 3 2 1 30 30 H 1.09005 * 109.54030 * 302.34560 * 3 2 1 31 31 H 1.08996 * 109.50693 * 183.21480 * 4 3 2 32 32 H 1.09002 * 109.54552 * 63.10638 * 4 3 2 33 33 H 1.08996 * 109.51152 * 181.39570 * 6 5 4 34 34 H 1.09001 * 109.53985 * 61.28859 * 6 5 4 35 35 H 1.08996 * 109.32180 * 342.24645 * 12 11 9 36 36 H 1.08996 * 109.18129 * 222.69055 * 12 11 9 37 37 H 1.09000 * 109.00811 * 297.69488 * 13 12 11 38 38 H 1.09000 * 109.00653 * 178.90881 * 13 12 11 39 39 H 1.09005 * 109.75983 * 162.05093 * 14 13 12 40 40 H 1.09000 * 109.80836 * 41.30664 * 14 13 12 41 41 H 0.96998 * 119.99891 * 6.20062 * 19 18 16 42 42 H 1.09004 * 109.47930 * 80.34545 * 24 15 14 43 43 H 1.09005 * 109.47847 * 200.37871 * 24 15 14 44 44 H 1.08996 * 108.87643 * 31.42175 * 25 11 9 45 45 H 1.09002 * 108.87489 * 149.96248 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0602 5 8 4.0174 0.5573 1.0404 6 6 3.5248 -0.7850 1.0711 7 6 1.9958 -0.7602 1.1428 8 1 1.6826 -0.2850 2.0724 9 6 1.4669 -2.1705 1.0957 10 8 1.1433 -2.6618 0.0351 11 7 1.3534 -2.8860 2.2323 12 6 1.8401 -2.3223 3.5137 13 6 0.7102 -1.8327 4.3192 14 6 -0.3084 -2.9470 4.6127 15 7 -1.1088 -3.1355 3.4371 16 6 -2.2175 -2.3522 3.2577 17 1 -2.2049 -1.3187 3.5710 18 6 -3.3577 -2.8864 2.6733 19 7 -3.5714 -4.1845 2.7139 20 14 -4.5847 -1.7639 1.8225 21 1 -5.7033 -2.5751 1.2787 22 1 -5.1159 -0.7802 2.7998 23 1 -3.9100 -1.0441 0.7125 24 6 -0.7763 -4.1595 2.4091 25 6 0.7614 -4.1941 2.2006 26 1 -0.3634 0.4925 0.9019 27 1 -0.3633 0.5349 -0.8775 28 1 -0.3634 -1.0273 -0.0245 29 1 1.6828 1.8825 0.9110 30 1 1.6135 1.9098 -0.8679 31 1 3.9222 2.3397 -0.0029 32 1 3.8393 0.8646 -0.9963 33 1 3.9220 -1.2985 1.9466 34 1 3.8385 -1.3091 0.1683 35 1 2.5216 -1.4966 3.3088 36 1 2.3691 -3.0975 4.0680 37 1 0.2109 -1.0287 3.7785 38 1 1.0902 -1.4414 5.2629 39 1 -0.9441 -2.6544 5.4484 40 1 0.2153 -3.8719 4.8542 41 1 -2.9812 -4.7573 3.2280 42 1 -1.1231 -5.1370 2.7443 43 1 -1.2650 -3.9029 1.4691 44 1 0.9764 -4.6552 1.2366 45 1 1.2063 -4.8018 2.9886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981013651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:21 Heat of formation + Delta-G solvation = -56.747173 kcal Electronic energy + Delta-G solvation = -26933.214002 eV Core-core repulsion = 23372.122520 eV Total energy + Delta-G solvation = -3561.091482 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89132 -40.09968 -38.67114 -36.68723 -36.29423 -34.02168 -33.33604 -32.21674 -30.06001 -29.17228 -27.02365 -26.24868 -25.36871 -25.14440 -23.63655 -21.79931 -21.47135 -20.02019 -19.28602 -18.38224 -17.80434 -17.56343 -17.06855 -16.48223 -16.28639 -16.04296 -15.92378 -15.67768 -15.54949 -15.09398 -14.94330 -14.81462 -14.30463 -14.22774 -13.94566 -13.76576 -13.39760 -13.30565 -12.95610 -12.78281 -12.68107 -12.41913 -12.32184 -12.10305 -12.07211 -11.99479 -11.89875 -11.69970 -11.29827 -11.05014 -10.59200 -10.45657 -9.66084 -9.52100 -8.87662 -8.17001 -5.52056 1.46636 1.47151 1.55418 1.72711 1.97943 2.58638 2.60409 2.83438 3.17154 3.38716 3.56314 3.65387 3.84776 3.87628 3.94212 4.07848 4.14266 4.19040 4.21058 4.34004 4.37736 4.41408 4.45683 4.54914 4.61677 4.64090 4.69203 4.78997 4.80870 4.88368 4.89397 4.93466 4.98359 5.10437 5.15989 5.40986 5.60250 5.71405 5.84406 5.88931 5.98446 6.38536 6.41881 7.14587 7.18622 7.76919 8.22230 8.96993 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.006211 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.743367 B = 4507.158114 C = 5305.318232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.532 5.532 3 C 0.016 3.984 4 C 0.061 3.939 5 O -0.384 6.384 6 C 0.084 3.916 7 C 0.039 3.961 8 H 0.070 0.930 9 C 0.519 3.481 10 O -0.568 6.568 11 N -0.587 5.587 12 C 0.114 3.886 13 C -0.156 4.156 14 C 0.156 3.844 15 N -0.604 5.604 16 C -0.351 4.351 17 H 0.036 0.964 18 C -0.065 4.065 19 N -0.938 5.938 20 Si 1.097 2.903 21 H -0.291 1.291 22 H -0.271 1.271 23 H -0.288 1.288 24 C 0.152 3.848 25 C 0.110 3.890 26 H 0.020 0.980 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.031 0.969 38 H 0.096 0.904 39 H 0.032 0.968 40 H 0.054 0.946 41 H 0.256 0.744 42 H 0.019 0.981 43 H 0.011 0.989 44 H 0.067 0.933 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.366 9.645 0.186 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.258 5.258 3 C -0.111 4.111 4 C -0.016 4.016 5 O -0.302 6.302 6 C 0.007 3.993 7 C -0.073 4.073 8 H 0.088 0.912 9 C 0.306 3.694 10 O -0.446 6.446 11 N -0.318 5.318 12 C -0.006 4.006 13 C -0.197 4.197 14 C 0.029 3.971 15 N -0.327 5.327 16 C -0.482 4.482 17 H 0.053 0.947 18 C -0.263 4.263 19 N -0.578 5.578 20 Si 0.923 3.077 21 H -0.216 1.216 22 H -0.197 1.197 23 H -0.215 1.215 24 C 0.026 3.974 25 C -0.015 4.015 26 H 0.039 0.961 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.050 0.950 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.030 0.970 44 H 0.085 0.915 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.114 9.247 -1.522 18.641 hybrid contribution -0.123 -0.074 1.355 1.362 sum 15.991 9.173 -0.167 18.436 Atomic orbital electron populations 1.22280 0.86912 1.01512 1.00858 1.62001 1.08168 1.14655 1.40939 1.23005 0.97329 0.87873 1.02922 1.22924 0.91199 0.97804 0.89650 1.87986 1.69412 1.23337 1.49510 1.22572 0.87877 0.84890 1.04010 1.22322 0.98932 0.91655 0.94420 0.91243 1.20576 0.77678 0.87685 0.83432 1.90649 1.51050 1.71756 1.31177 1.47548 1.58667 1.17291 1.08291 1.21143 0.96049 1.00429 0.83000 1.21665 0.97582 0.99781 1.00641 1.20503 0.92193 0.96343 0.88031 1.43797 1.27862 1.41708 1.19352 1.19877 0.92278 0.92558 1.43438 0.94679 1.27005 0.98910 0.99073 1.01307 1.70892 1.38691 1.05458 1.42796 0.83102 0.74445 0.73924 0.76248 1.21649 1.19654 1.21483 1.21858 0.93438 0.91289 0.90808 1.21540 0.92975 0.84487 1.02524 0.96106 0.89422 0.94024 0.93791 0.87415 0.85021 0.91839 0.85671 0.92212 0.88368 0.87674 0.95030 0.88540 0.94954 0.92741 0.93412 0.96281 0.97040 0.91478 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 9.21 127.69 1.18 2.32 16 2 N -0.53 -16.21 4.53 -900.49 -4.08 -20.28 16 3 C 0.02 0.35 5.66 86.31 0.49 0.84 16 4 C 0.06 1.09 7.01 72.01 0.50 1.59 16 5 O -0.38 -8.41 10.83 -148.98 -1.61 -10.02 16 6 C 0.08 1.95 6.06 72.01 0.44 2.39 16 7 C 0.04 1.15 1.52 44.18 0.07 1.22 16 8 H 0.07 2.07 6.73 -2.39 -0.02 2.06 16 9 C 0.52 19.05 5.85 87.65 0.51 19.56 16 10 O -0.57 -25.80 14.79 -3.05 -0.05 -25.84 16 11 N -0.59 -19.55 2.46 -830.50 -2.04 -21.60 16 12 C 0.11 2.81 5.25 84.23 0.44 3.25 16 13 C -0.16 -4.66 5.64 29.04 0.16 -4.49 16 14 C 0.16 5.93 5.63 87.21 0.49 6.42 16 15 N -0.60 -29.25 2.25 -697.37 -1.57 -30.82 16 16 C -0.35 -19.66 9.02 84.03 0.76 -18.91 16 17 H 0.04 2.02 7.94 -2.91 -0.02 1.99 16 18 C -0.06 -3.77 4.72 84.86 0.40 -3.37 16 19 N -0.94 -58.25 12.92 21.65 0.28 -57.97 16 20 Si 1.10 53.20 29.98 68.60 2.06 55.26 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 C 0.15 7.28 5.21 86.68 0.45 7.73 16 25 C 0.11 4.03 5.30 87.67 0.46 4.50 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.04 1.85 6.09 -2.39 -0.01 1.83 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.13 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.13 2.25 6.92 -2.39 -0.02 2.24 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.95 4.79 -2.39 -0.01 1.93 16 36 H 0.11 1.94 8.05 -2.39 -0.02 1.92 16 37 H 0.03 1.16 7.81 -2.39 -0.02 1.14 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.03 1.32 8.02 -2.38 -0.02 1.30 16 40 H 0.05 1.82 7.59 -2.39 -0.02 1.80 16 41 H 0.26 16.01 6.60 -92.71 -0.61 15.39 16 42 H 0.02 0.96 7.14 -2.39 -0.02 0.95 16 43 H 0.01 0.63 7.48 -2.38 -0.02 0.62 16 44 H 0.07 2.57 7.31 -2.39 -0.02 2.56 16 45 H 0.10 2.84 7.72 -2.39 -0.02 2.83 16 Total: -1.00 -75.50 340.45 0.47 -75.03 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.13 Total: 13.19 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 6.36 Total: 23.05 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -7.41 Total: -130.67 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -1.66 Total: -35.86 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 2.06 Total: 55.26 kcal Total: -75.50 0.47 -75.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981013651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.283 kcal (2) G-P(sol) polarization free energy of solvation -75.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds