Wall clock time and date at job start Tue Mar 31 2020 04:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47020 * 110.99753 * 2 1 4 4 C 1.53094 * 109.25633 * 177.60975 * 3 2 1 5 5 O 1.43015 * 109.26050 * 56.84990 * 4 3 2 6 6 C 1.43007 * 113.73576 * 301.32729 * 5 4 3 7 7 C 1.47019 * 110.99938 * 236.32257 * 2 1 3 8 8 H 1.08999 * 109.47291 * 62.43173 * 7 2 1 9 9 C 1.50701 * 109.54115 * 302.30200 * 7 2 1 10 10 O 1.21275 * 120.00507 * 334.98987 * 9 7 2 11 11 N 1.34777 * 119.99750 * 154.99108 * 9 7 2 12 12 C 1.48212 * 119.97046 * 185.12659 * 11 9 7 13 13 C 1.47611 * 110.03886 * 102.55142 * 12 11 9 14 14 C 1.53791 * 111.84353 * 58.43341 * 13 12 11 15 15 N 1.43454 * 107.96126 * 281.54338 * 14 13 12 16 16 C 1.36937 * 118.94187 * 273.63134 * 15 14 13 17 17 H 1.08004 * 119.99942 * 23.31679 * 16 15 14 18 18 C 1.38814 * 120.00536 * 203.32230 * 16 15 14 19 19 N 1.31622 * 119.99617 * 14.97986 * 18 16 15 20 20 Si 1.86802 * 120.00237 * 194.99110 * 18 16 15 21 21 H 1.48496 * 109.46899 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47262 * 119.99480 * 20 18 16 23 23 H 1.48497 * 109.46678 * 239.99544 * 20 18 16 24 24 C 1.48854 * 122.12041 * 93.61113 * 15 14 13 25 25 C 1.43627 * 119.97066 * 5.39918 * 11 9 7 26 26 H 1.08994 * 109.47364 * 64.78357 * 1 2 3 27 27 H 1.09006 * 109.46613 * 184.78400 * 1 2 3 28 28 H 1.09004 * 109.47283 * 304.78027 * 1 2 3 29 29 H 1.08997 * 109.50669 * 57.67098 * 3 2 1 30 30 H 1.08996 * 109.54237 * 297.56693 * 3 2 1 31 31 H 1.08997 * 109.50904 * 296.91122 * 4 3 2 32 32 H 1.09007 * 109.53868 * 176.80687 * 4 3 2 33 33 H 1.09006 * 109.50692 * 178.60613 * 6 5 4 34 34 H 1.09003 * 109.51014 * 298.69280 * 6 5 4 35 35 H 1.09000 * 109.32730 * 222.77930 * 12 11 9 36 36 H 1.08999 * 109.32444 * 342.25015 * 12 11 9 37 37 H 1.09001 * 109.10169 * 297.75459 * 13 12 11 38 38 H 1.08998 * 108.90501 * 178.97962 * 13 12 11 39 39 H 1.09006 * 109.76354 * 161.92418 * 14 13 12 40 40 H 1.09006 * 109.80499 * 41.19017 * 14 13 12 41 41 H 0.97002 * 119.99644 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.47868 * 200.65872 * 24 15 14 43 43 H 1.09001 * 109.48984 * 80.63451 * 24 15 14 44 44 H 1.09000 * 108.86815 * 31.42963 * 25 11 9 45 45 H 1.08999 * 108.87342 * 149.86072 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3265 0.0603 5 8 4.0174 0.5576 -1.0404 6 6 3.5250 -0.7847 -1.0710 7 6 1.9958 -0.7611 -1.1422 8 1 1.6820 -0.2856 -2.0715 9 6 1.4680 -2.1718 -1.0945 10 8 1.1256 -2.6558 -0.0365 11 7 1.3763 -2.8957 -2.2277 12 6 0.7524 -4.2398 -2.1992 13 6 -0.6186 -4.1726 -2.7422 14 6 -0.6376 -3.6364 -4.1835 15 7 -0.4945 -2.2101 -4.1268 16 6 -1.6137 -1.4378 -3.9657 17 1 -2.5012 -1.8598 -3.5175 18 6 -1.6079 -0.1124 -4.3784 19 7 -0.6584 0.3232 -5.1791 20 14 -2.9473 1.0528 -3.7973 21 1 -3.8890 0.3222 -2.9116 22 1 -2.3335 2.1778 -3.0472 23 1 -3.6844 1.5846 -4.9717 24 6 0.8314 -1.5427 -4.2370 25 6 1.8885 -2.3663 -3.4606 26 1 -0.3634 0.4378 -0.9297 27 1 -0.3633 -1.0242 0.0857 28 1 -0.3634 0.5862 0.8441 29 1 1.6133 1.9092 0.8681 30 1 1.6827 1.8833 -0.9106 31 1 3.8385 0.8645 0.9963 32 1 3.9227 2.3398 0.0034 33 1 3.9222 -1.2983 -1.9465 34 1 3.8392 -1.3084 -0.1681 35 1 1.3477 -4.9266 -2.8008 36 1 0.7194 -4.6004 -1.1712 37 1 -1.2203 -3.5179 -2.1118 38 1 -1.0528 -5.1723 -2.7296 39 1 -1.5838 -3.8933 -4.6599 40 1 0.1886 -4.0676 -4.7489 41 1 -0.6541 1.2494 -5.4673 42 1 0.7698 -0.5398 -3.8143 43 1 1.1199 -1.4779 -5.2861 44 1 2.7430 -1.7261 -3.2414 45 1 2.2217 -3.1931 -4.0879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981013652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:24 Heat of formation + Delta-G solvation = -27.083800 kcal Electronic energy + Delta-G solvation = -27224.618452 eV Core-core repulsion = 23664.813270 eV Total energy + Delta-G solvation = -3559.805181 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45002 -38.72390 -36.98261 -35.34210 -34.24901 -33.00962 -31.22065 -30.72238 -28.61773 -27.59975 -25.66060 -24.50174 -24.04259 -23.66311 -22.17456 -20.27138 -19.79104 -18.57239 -17.25917 -16.50761 -16.32914 -16.23285 -15.75318 -15.19281 -14.87248 -14.56666 -14.28195 -14.22768 -13.78071 -13.56613 -13.33207 -13.02615 -12.85852 -12.53031 -12.40444 -12.13280 -11.99677 -11.53679 -11.47773 -11.42274 -11.07792 -11.01568 -10.82865 -10.61168 -10.55137 -10.28625 -10.20951 -9.89739 -9.77823 -9.74609 -9.14768 -8.52989 -8.18125 -8.02756 -6.77818 -5.85131 -3.25286 2.96496 3.29517 3.38251 3.39182 3.41268 3.82071 4.10831 4.44147 4.83742 4.93616 5.06961 5.17653 5.22002 5.27487 5.34605 5.36487 5.51757 5.59089 5.63827 5.75232 5.77889 5.78349 5.85199 5.88846 5.89606 6.05538 6.08614 6.13090 6.26906 6.40130 6.41477 6.49251 6.77516 6.87738 7.00362 7.00998 7.09596 7.14421 7.33602 7.45941 7.74366 7.94693 8.36870 8.65793 9.14658 9.82748 10.27201 11.22610 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.007997 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.937628 B = 3500.342870 C = 4561.575913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.518 5.518 3 C 0.016 3.984 4 C 0.063 3.937 5 O -0.379 6.379 6 C 0.077 3.923 7 C 0.028 3.972 8 H 0.084 0.916 9 C 0.531 3.469 10 O -0.537 6.537 11 N -0.584 5.584 12 C 0.129 3.871 13 C -0.169 4.169 14 C 0.162 3.838 15 N -0.591 5.591 16 C -0.248 4.248 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.908 5.908 20 Si 0.894 3.106 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.164 3.836 25 C 0.073 3.927 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.252 0.748 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -2.338 6.381 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.113 4.113 4 C -0.014 4.014 5 O -0.297 6.297 6 C 0.000 4.000 7 C -0.084 4.084 8 H 0.102 0.898 9 C 0.318 3.682 10 O -0.414 6.414 11 N -0.316 5.316 12 C 0.008 3.992 13 C -0.210 4.210 14 C 0.034 3.966 15 N -0.312 5.312 16 C -0.378 4.378 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.553 5.553 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.038 3.962 25 C -0.052 4.052 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.217 -2.606 7.141 11.194 hybrid contribution -1.387 1.127 -0.441 1.841 sum 6.830 -1.479 6.700 9.682 Atomic orbital electron populations 1.22467 0.85826 1.03808 1.00551 1.62024 1.09242 1.12272 1.40796 1.22838 0.96212 0.90089 1.02115 1.22691 0.92487 0.96292 0.89919 1.87999 1.69400 1.23611 1.48677 1.22574 0.90353 0.84303 1.02807 1.22386 0.96966 0.93734 0.95329 0.89804 1.19978 0.78153 0.86517 0.83579 1.90615 1.49778 1.71362 1.29657 1.47392 1.58819 1.17615 1.07811 1.20659 0.94251 0.82570 1.01730 1.21959 0.96526 1.00448 1.02053 1.20282 0.98754 0.85449 0.92139 1.43655 1.02936 1.00024 1.84604 1.19228 0.92679 0.93039 1.32831 0.91672 1.24911 0.98075 0.98652 0.97908 1.70021 1.34899 1.15588 1.34832 0.86334 0.81689 0.81280 0.78267 1.20281 1.21665 1.21674 1.21948 0.82318 0.95257 0.96651 1.22318 0.97970 0.98976 0.85952 0.94708 0.89928 0.91668 0.89453 0.93524 0.92255 0.88385 0.88021 0.91870 0.92032 0.90376 0.91458 0.92642 0.93614 0.94764 0.93734 0.90347 0.94025 0.91631 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.16 60.06 0.55 0.94 16 2 N -0.52 -8.91 4.53 -235.97 -1.07 -9.98 16 3 C 0.02 0.23 5.66 -3.71 -0.02 0.20 16 4 C 0.06 0.80 7.01 37.21 0.26 1.06 16 5 O -0.38 -5.67 10.83 -35.23 -0.38 -6.05 16 6 C 0.08 1.15 6.07 37.21 0.23 1.38 16 7 C 0.03 0.49 1.54 -68.75 -0.11 0.38 16 8 H 0.08 1.66 5.76 -51.93 -0.30 1.36 16 9 C 0.53 10.08 5.94 -10.98 -0.07 10.01 16 10 O -0.54 -11.46 14.59 5.56 0.08 -11.38 16 11 N -0.58 -10.36 2.45 -176.41 -0.43 -10.79 16 12 C 0.13 2.11 5.76 -5.70 -0.03 2.08 16 13 C -0.17 -2.96 5.65 -28.92 -0.16 -3.13 16 14 C 0.16 3.18 5.63 -5.24 -0.03 3.15 16 15 N -0.59 -13.71 2.54 -172.00 -0.44 -14.15 16 16 C -0.25 -6.51 9.29 -15.06 -0.14 -6.65 16 17 H 0.07 1.74 7.87 -52.48 -0.41 1.33 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 19 N -0.91 -25.03 10.81 55.49 0.60 -24.43 16 20 Si 0.89 21.45 29.58 -169.99 -5.03 16.42 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.16 3.57 5.03 -1.75 -0.01 3.56 16 25 C 0.07 1.25 4.83 -4.58 -0.02 1.23 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.68 6.14 -51.93 -0.32 1.36 16 28 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 29 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.35 6.35 -51.93 -0.33 1.02 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.85 8.05 -51.93 -0.42 0.44 16 36 H 0.08 1.31 7.08 -51.93 -0.37 0.95 16 37 H 0.07 1.41 7.91 -51.93 -0.41 1.00 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 40 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16 41 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.08 1.94 5.07 -51.93 -0.26 1.67 16 43 H 0.04 0.97 8.02 -51.93 -0.42 0.56 16 44 H 0.07 1.01 4.95 -51.93 -0.26 0.75 16 45 H 0.06 0.98 7.73 -51.93 -0.40 0.58 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -30.25 337.14 -8.45 -38.69 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.22 Total: 2.39 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 0.36 Total: 14.19 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -1.34 Total: -59.34 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.30 Total: -17.43 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.25 -8.45 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981013652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.608 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds