Wall clock time and date at job start Tue Mar 31 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47020 * 110.99753 * 2 1 4 4 C 1.53094 * 109.25633 * 177.60975 * 3 2 1 5 5 O 1.43015 * 109.26050 * 56.84990 * 4 3 2 6 6 C 1.43007 * 113.73576 * 301.32729 * 5 4 3 7 7 C 1.47019 * 110.99938 * 236.32257 * 2 1 3 8 8 H 1.08999 * 109.47291 * 62.43173 * 7 2 1 9 9 C 1.50701 * 109.54115 * 302.30200 * 7 2 1 10 10 O 1.21275 * 120.00507 * 334.98987 * 9 7 2 11 11 N 1.34777 * 119.99750 * 154.99108 * 9 7 2 12 12 C 1.48212 * 119.97046 * 185.12659 * 11 9 7 13 13 C 1.47611 * 110.03886 * 102.55142 * 12 11 9 14 14 C 1.53791 * 111.84353 * 58.43341 * 13 12 11 15 15 N 1.43454 * 107.96126 * 281.54338 * 14 13 12 16 16 C 1.36937 * 118.94187 * 273.63134 * 15 14 13 17 17 H 1.08004 * 119.99942 * 23.31679 * 16 15 14 18 18 C 1.38814 * 120.00536 * 203.32230 * 16 15 14 19 19 N 1.31622 * 119.99617 * 14.97986 * 18 16 15 20 20 Si 1.86802 * 120.00237 * 194.99110 * 18 16 15 21 21 H 1.48496 * 109.46899 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47262 * 119.99480 * 20 18 16 23 23 H 1.48497 * 109.46678 * 239.99544 * 20 18 16 24 24 C 1.48854 * 122.12041 * 93.61113 * 15 14 13 25 25 C 1.43627 * 119.97066 * 5.39918 * 11 9 7 26 26 H 1.08994 * 109.47364 * 64.78357 * 1 2 3 27 27 H 1.09006 * 109.46613 * 184.78400 * 1 2 3 28 28 H 1.09004 * 109.47283 * 304.78027 * 1 2 3 29 29 H 1.08997 * 109.50669 * 57.67098 * 3 2 1 30 30 H 1.08996 * 109.54237 * 297.56693 * 3 2 1 31 31 H 1.08997 * 109.50904 * 296.91122 * 4 3 2 32 32 H 1.09007 * 109.53868 * 176.80687 * 4 3 2 33 33 H 1.09006 * 109.50692 * 178.60613 * 6 5 4 34 34 H 1.09003 * 109.51014 * 298.69280 * 6 5 4 35 35 H 1.09000 * 109.32730 * 222.77930 * 12 11 9 36 36 H 1.08999 * 109.32444 * 342.25015 * 12 11 9 37 37 H 1.09001 * 109.10169 * 297.75459 * 13 12 11 38 38 H 1.08998 * 108.90501 * 178.97962 * 13 12 11 39 39 H 1.09006 * 109.76354 * 161.92418 * 14 13 12 40 40 H 1.09006 * 109.80499 * 41.19017 * 14 13 12 41 41 H 0.97002 * 119.99644 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.47868 * 200.65872 * 24 15 14 43 43 H 1.09001 * 109.48984 * 80.63451 * 24 15 14 44 44 H 1.09000 * 108.86815 * 31.42963 * 25 11 9 45 45 H 1.08999 * 108.87342 * 149.86072 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3265 0.0603 5 8 4.0174 0.5576 -1.0404 6 6 3.5250 -0.7847 -1.0710 7 6 1.9958 -0.7611 -1.1422 8 1 1.6820 -0.2856 -2.0715 9 6 1.4680 -2.1718 -1.0945 10 8 1.1256 -2.6558 -0.0365 11 7 1.3763 -2.8957 -2.2277 12 6 0.7524 -4.2398 -2.1992 13 6 -0.6186 -4.1726 -2.7422 14 6 -0.6376 -3.6364 -4.1835 15 7 -0.4945 -2.2101 -4.1268 16 6 -1.6137 -1.4378 -3.9657 17 1 -2.5012 -1.8598 -3.5175 18 6 -1.6079 -0.1124 -4.3784 19 7 -0.6584 0.3232 -5.1791 20 14 -2.9473 1.0528 -3.7973 21 1 -3.8890 0.3222 -2.9116 22 1 -2.3335 2.1778 -3.0472 23 1 -3.6844 1.5846 -4.9717 24 6 0.8314 -1.5427 -4.2370 25 6 1.8885 -2.3663 -3.4606 26 1 -0.3634 0.4378 -0.9297 27 1 -0.3633 -1.0242 0.0857 28 1 -0.3634 0.5862 0.8441 29 1 1.6133 1.9092 0.8681 30 1 1.6827 1.8833 -0.9106 31 1 3.8385 0.8645 0.9963 32 1 3.9227 2.3398 0.0034 33 1 3.9222 -1.2983 -1.9465 34 1 3.8392 -1.3084 -0.1681 35 1 1.3477 -4.9266 -2.8008 36 1 0.7194 -4.6004 -1.1712 37 1 -1.2203 -3.5179 -2.1118 38 1 -1.0528 -5.1723 -2.7296 39 1 -1.5838 -3.8933 -4.6599 40 1 0.1886 -4.0676 -4.7489 41 1 -0.6541 1.2494 -5.4673 42 1 0.7698 -0.5398 -3.8143 43 1 1.1199 -1.4779 -5.2861 44 1 2.7430 -1.7261 -3.2414 45 1 2.2217 -3.1931 -4.0879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981013652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:23 Heat of formation + Delta-G solvation = -48.367557 kcal Electronic energy + Delta-G solvation = -27225.541384 eV Core-core repulsion = 23664.813270 eV Total energy + Delta-G solvation = -3560.728114 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84042 -40.03194 -38.56116 -36.67338 -35.92539 -34.54792 -32.89134 -32.16249 -29.93956 -29.25917 -27.26157 -25.82832 -25.58286 -25.22352 -23.56141 -21.64882 -21.40711 -20.01694 -18.93352 -18.06469 -17.76858 -17.52803 -17.08696 -16.74371 -16.16567 -16.08094 -15.81852 -15.76186 -15.45816 -14.93521 -14.87805 -14.53632 -14.29774 -14.03849 -13.88536 -13.66699 -13.32799 -13.18743 -13.04998 -12.86279 -12.73966 -12.53561 -12.35100 -12.31733 -12.10259 -11.79350 -11.71882 -11.65938 -11.46145 -11.02864 -10.61453 -10.47023 -9.61347 -9.49476 -8.69307 -7.88800 -5.29379 1.33877 1.38680 1.46177 1.49352 2.02599 2.45470 2.62870 2.87390 3.24362 3.48670 3.67415 3.70064 3.89526 3.96447 4.07191 4.17033 4.18296 4.21061 4.31358 4.40121 4.41429 4.48753 4.50737 4.57269 4.59298 4.73408 4.77893 4.83153 4.87027 4.90954 4.92384 5.04742 5.22774 5.27065 5.47064 5.57298 5.62754 5.70297 5.78486 5.82912 6.00427 6.35856 6.48807 7.14920 7.19307 7.93408 8.30496 9.15301 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.007997 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.937628 B = 3500.342870 C = 4561.575913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.523 5.523 3 C 0.013 3.987 4 C 0.062 3.938 5 O -0.389 6.389 6 C 0.084 3.916 7 C 0.030 3.970 8 H 0.057 0.943 9 C 0.528 3.472 10 O -0.564 6.564 11 N -0.585 5.585 12 C 0.126 3.874 13 C -0.154 4.154 14 C 0.157 3.843 15 N -0.604 5.604 16 C -0.250 4.250 17 H 0.053 0.947 18 C -0.041 4.041 19 N -0.928 5.928 20 Si 0.942 3.058 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.172 3.828 25 C 0.085 3.915 26 H 0.004 0.996 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.060 0.940 41 H 0.247 0.753 42 H 0.042 0.958 43 H 0.022 0.978 44 H 0.084 0.916 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.669 -3.176 7.111 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.248 5.248 3 C -0.114 4.114 4 C -0.014 4.014 5 O -0.307 6.307 6 C 0.007 3.993 7 C -0.082 4.082 8 H 0.075 0.925 9 C 0.315 3.685 10 O -0.443 6.443 11 N -0.316 5.316 12 C 0.005 3.995 13 C -0.194 4.194 14 C 0.030 3.970 15 N -0.326 5.326 16 C -0.380 4.380 17 H 0.071 0.929 18 C -0.237 4.237 19 N -0.575 5.575 20 Si 0.771 3.229 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.217 1.217 24 C 0.047 3.953 25 C -0.040 4.040 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.103 0.897 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.805 -3.473 7.867 13.042 hybrid contribution -1.928 1.357 -0.657 2.448 sum 7.877 -2.115 7.210 10.886 Atomic orbital electron populations 1.22309 0.87026 1.02228 1.00026 1.62098 1.08230 1.14028 1.40456 1.23007 0.97744 0.88398 1.02297 1.22916 0.90920 0.97765 0.89802 1.87990 1.69339 1.23636 1.49784 1.22584 0.88110 0.84783 1.03866 1.22379 0.98936 0.92696 0.94198 0.92537 1.20261 0.77719 0.86966 0.83555 1.90593 1.51016 1.72027 1.30681 1.47518 1.58418 1.18087 1.07549 1.20823 0.93894 0.82469 1.02275 1.21762 0.97109 1.01040 0.99537 1.20461 0.99334 0.83562 0.93615 1.43873 1.02669 1.01387 1.84708 1.19345 0.93350 0.93619 1.31732 0.92892 1.25409 0.99861 0.99768 0.98621 1.70141 1.36097 1.15308 1.35946 0.85581 0.79916 0.79695 0.77663 1.20055 1.21952 1.21738 1.21715 0.83046 0.94608 0.95953 1.22154 0.96506 0.99763 0.85584 0.97702 0.92513 0.89123 0.87040 0.95383 0.90986 0.85406 0.86376 0.91324 0.88110 0.90690 0.95624 0.89436 0.94541 0.92154 0.94323 0.93931 0.96013 0.89745 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 9.16 127.69 1.17 2.38 16 2 N -0.52 -17.83 4.53 -900.46 -4.07 -21.90 16 3 C 0.01 0.36 5.66 86.31 0.49 0.85 16 4 C 0.06 1.42 7.01 72.01 0.50 1.93 16 5 O -0.39 -10.86 10.83 -148.98 -1.61 -12.48 16 6 C 0.08 2.36 6.07 72.01 0.44 2.80 16 7 C 0.03 1.05 1.54 44.18 0.07 1.12 16 8 H 0.06 2.30 5.76 -2.39 -0.01 2.29 16 9 C 0.53 19.78 5.94 87.66 0.52 20.30 16 10 O -0.56 -23.96 14.59 -3.01 -0.04 -24.00 16 11 N -0.58 -19.88 2.45 -830.42 -2.03 -21.91 16 12 C 0.13 3.81 5.76 84.36 0.49 4.29 16 13 C -0.15 -5.17 5.65 29.18 0.16 -5.00 16 14 C 0.16 5.96 5.63 87.21 0.49 6.46 16 15 N -0.60 -28.27 2.54 -698.10 -1.78 -30.05 16 16 C -0.25 -13.45 9.29 84.03 0.78 -12.67 16 17 H 0.05 2.93 7.87 -2.91 -0.02 2.90 16 18 C -0.04 -2.27 4.95 84.86 0.42 -1.85 16 19 N -0.93 -52.68 10.81 21.65 0.23 -52.45 16 20 Si 0.94 45.34 29.58 68.60 2.03 47.37 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 C 0.17 7.57 5.03 86.56 0.44 8.00 16 25 C 0.09 2.75 4.83 87.55 0.42 3.17 16 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.06 2.39 6.14 -2.38 -0.01 2.38 16 28 H 0.09 2.82 8.13 -2.39 -0.02 2.80 16 29 H 0.11 2.48 8.13 -2.39 -0.02 2.46 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.12 2.86 6.35 -2.38 -0.02 2.84 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 2.32 8.05 -2.39 -0.02 2.30 16 36 H 0.07 2.37 7.08 -2.39 -0.02 2.35 16 37 H 0.02 1.06 7.91 -2.39 -0.02 1.05 16 38 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 1.44 8.02 -2.38 -0.02 1.42 16 40 H 0.06 1.98 7.59 -2.38 -0.02 1.97 16 41 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.04 2.18 5.07 -2.38 -0.01 2.16 16 43 H 0.02 1.03 8.02 -2.39 -0.02 1.02 16 44 H 0.08 2.44 4.95 -2.39 -0.01 2.42 16 45 H 0.10 2.56 7.73 -2.39 -0.02 2.54 16 Total: -1.00 -67.85 337.14 0.09 -67.77 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.97 Total: 15.88 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: 6.39 Total: 31.78 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -7.65 Total: -126.31 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.66 Total: -36.48 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.85 0.09 -67.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981013652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.399 kcal (2) G-P(sol) polarization free energy of solvation -67.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds