Wall clock time and date at job start Tue Mar 31 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47013 * 111.00113 * 2 1 4 4 C 1.53090 * 109.26013 * 177.60575 * 3 2 1 5 5 O 1.43018 * 109.25985 * 56.85108 * 4 3 2 6 6 C 1.43009 * 113.73724 * 301.33047 * 5 4 3 7 7 C 1.47013 * 111.00186 * 236.36707 * 2 1 3 8 8 H 1.08997 * 109.50911 * 62.45308 * 7 2 1 9 9 C 1.50701 * 109.50687 * 302.32692 * 7 2 1 10 10 O 1.21288 * 119.99551 * 333.92606 * 9 7 2 11 11 N 1.34776 * 120.00468 * 153.92570 * 9 7 2 12 12 C 1.46928 * 120.62468 * 5.02521 * 11 9 7 13 13 C 1.52766 * 109.00584 * 233.58291 * 12 11 9 14 14 C 1.53042 * 109.38018 * 305.58983 * 13 12 11 15 15 N 1.46500 * 109.45536 * 181.25903 * 14 13 12 16 16 C 1.36942 * 120.00163 * 84.93545 * 15 14 13 17 17 H 1.08003 * 119.99652 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00098 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99958 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00376 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47624 * 89.99384 * 20 18 16 22 22 H 1.48496 * 109.47404 * 210.00068 * 20 18 16 23 23 H 1.48502 * 109.46695 * 329.99720 * 20 18 16 24 24 C 1.53037 * 109.53916 * 61.24300 * 14 13 12 25 25 C 1.46920 * 120.63235 * 185.30043 * 11 9 7 26 26 H 1.09004 * 109.46609 * 55.58855 * 1 2 3 27 27 H 1.09006 * 109.46973 * 175.58400 * 1 2 3 28 28 H 1.08997 * 109.47463 * 295.58453 * 1 2 3 29 29 H 1.09002 * 109.50632 * 297.54285 * 3 2 1 30 30 H 1.09005 * 109.50543 * 57.67232 * 3 2 1 31 31 H 1.09004 * 109.50614 * 176.78331 * 4 3 2 32 32 H 1.08997 * 109.51069 * 296.86857 * 4 3 2 33 33 H 1.09000 * 109.50783 * 178.60235 * 6 5 4 34 34 H 1.09001 * 109.50801 * 298.69245 * 6 5 4 35 35 H 1.08997 * 109.58905 * 353.41718 * 12 11 9 36 36 H 1.08997 * 109.58766 * 113.84324 * 12 11 9 37 37 H 1.08994 * 109.56546 * 185.55278 * 13 12 11 38 38 H 1.09001 * 109.35799 * 65.49869 * 13 12 11 39 39 H 1.08995 * 109.46239 * 301.21856 * 14 13 12 40 40 H 0.97004 * 120.00236 * 264.93021 * 15 14 13 41 41 H 0.97003 * 119.99873 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.49911 * 178.68018 * 24 14 13 43 43 H 1.08996 * 109.52730 * 58.59799 * 24 14 13 44 44 H 1.09005 * 109.59049 * 246.15432 * 25 11 9 45 45 H 1.09000 * 109.58628 * 6.58691 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 0.0604 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7848 -1.0709 7 6 1.9959 -0.7602 -1.1427 8 1 1.6828 -0.2843 -2.0720 9 6 1.4671 -2.1706 -1.0957 10 8 1.1425 -2.6614 -0.0351 11 7 1.3548 -2.8865 -2.2321 12 6 1.8453 -2.3474 -3.5079 13 6 0.7181 -2.4026 -4.5375 14 6 0.1792 -3.8324 -4.6244 15 7 -0.8816 -3.8935 -5.6329 16 6 -0.5623 -4.0722 -6.9526 17 1 0.4716 -4.1675 -7.2498 18 6 -1.5674 -4.1307 -7.9081 19 7 -1.2605 -4.3018 -9.1765 20 14 -3.3557 -3.9650 -7.3941 21 1 -3.7496 -2.5337 -7.4268 22 1 -4.2131 -4.7360 -8.3298 23 1 -3.5258 -4.4939 -6.0169 24 6 -0.3855 -4.2500 -3.2647 25 6 0.7343 -4.2182 -2.2196 26 1 -0.3633 0.5808 -0.8479 27 1 -0.3633 -1.0247 -0.0791 28 1 -0.3634 0.4438 0.9269 29 1 1.6828 1.8825 -0.9110 30 1 1.6134 1.9092 0.8682 31 1 3.9221 2.3399 0.0030 32 1 3.8385 0.8651 0.9968 33 1 3.9223 -1.2984 -1.9465 34 1 3.8392 -1.3085 -0.1681 35 1 2.1622 -1.3137 -3.3701 36 1 2.6861 -2.9459 -3.8583 37 1 1.0987 -2.0974 -5.5121 38 1 -0.0833 -1.7297 -4.2323 39 1 0.9866 -4.5084 -4.9054 40 1 -1.8103 -3.8076 -5.3660 41 1 -1.9629 -4.3431 -9.8442 42 1 -0.7902 -5.2597 -3.3334 43 1 -1.1766 -3.5602 -2.9712 44 1 1.4827 -4.9724 -2.4630 45 1 0.3184 -4.4183 -1.2322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991374699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:04 Heat of formation + Delta-G solvation = -45.871258 kcal Electronic energy + Delta-G solvation = -25510.257495 eV Core-core repulsion = 21949.637629 eV Total energy + Delta-G solvation = -3560.619867 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.89724 -39.17283 -37.52625 -35.79777 -34.70082 -32.52312 -31.73430 -30.73751 -29.86010 -28.98226 -25.69651 -24.50627 -24.45335 -23.12133 -22.41456 -21.20842 -20.15675 -19.05074 -17.75283 -17.32168 -16.77495 -16.71573 -15.92545 -15.38255 -15.16317 -14.91529 -14.78498 -14.45685 -14.08705 -14.04687 -13.70777 -13.49349 -13.26248 -12.97171 -12.69661 -12.55940 -12.27222 -12.14894 -11.95893 -11.92596 -11.53436 -11.11067 -11.08633 -10.99677 -10.94918 -10.61666 -10.30927 -10.18983 -9.95612 -9.65114 -9.63999 -8.99655 -8.68015 -8.61672 -7.34966 -5.83298 -3.19550 2.45581 2.80950 3.32656 3.35884 3.40564 3.41191 3.61289 4.32380 4.46933 4.53396 4.60355 4.66918 4.82308 4.88647 4.98119 5.02826 5.16348 5.21658 5.24130 5.26264 5.29409 5.35236 5.41821 5.44206 5.50908 5.57150 5.60476 5.76724 5.78216 5.86209 6.02569 6.08689 6.18886 6.30829 6.40837 6.53185 6.60607 6.72169 6.73686 6.85858 7.36500 7.91933 8.11245 8.35738 9.13633 9.86447 10.05873 11.34842 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.003574 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.748004 B = 7832.532224 C = 7937.973496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.018 3.982 4 C 0.060 3.940 5 O -0.378 6.378 6 C 0.076 3.924 7 C 0.028 3.972 8 H 0.075 0.925 9 C 0.522 3.478 10 O -0.526 6.526 11 N -0.606 5.606 12 C 0.102 3.898 13 C -0.152 4.152 14 C 0.184 3.816 15 N -0.748 5.748 16 C -0.246 4.246 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.142 4.142 25 C 0.118 3.882 26 H 0.026 0.974 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 9.754 18.967 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.110 4.110 4 C -0.017 4.017 5 O -0.296 6.296 6 C -0.001 4.001 7 C -0.084 4.084 8 H 0.093 0.907 9 C 0.308 3.692 10 O -0.402 6.402 11 N -0.340 5.340 12 C -0.022 4.022 13 C -0.193 4.193 14 C 0.074 3.926 15 N -0.390 5.390 16 C -0.376 4.376 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.181 4.181 25 C -0.005 4.005 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.476 9.272 19.584 23.267 hybrid contribution -1.983 0.537 -0.528 2.121 sum 6.493 9.809 19.057 22.395 Atomic orbital electron populations 1.22488 0.86072 1.03223 1.00924 1.61966 1.08960 1.12807 1.40737 1.22865 0.96544 0.89441 1.02187 1.22729 0.92170 0.96591 0.90175 1.88028 1.69451 1.23497 1.48583 1.22564 0.89511 0.84498 1.03554 1.22391 0.97971 0.93450 0.94576 0.90729 1.20077 0.78566 0.86819 0.83704 1.90687 1.49322 1.71057 1.29096 1.48227 1.59554 1.18397 1.07799 1.21901 0.97862 0.99074 0.83316 1.22568 0.97150 1.01198 0.98360 1.20133 0.91806 0.93388 0.87262 1.42800 1.03305 1.88680 1.04223 1.19063 0.94962 1.42224 0.81318 0.89132 1.24670 0.97389 1.01786 0.95151 1.69698 1.31984 1.56507 0.99814 0.86564 0.86662 0.77783 0.77584 1.21145 1.21697 1.20344 1.22253 0.97747 1.02529 0.95616 1.21609 0.95419 0.82845 1.00620 0.95518 0.90232 0.90832 0.93626 0.89069 0.88080 0.91931 0.87706 0.91381 0.90321 0.90794 0.89950 0.92460 0.92398 0.80657 0.93003 0.90362 0.92068 0.91176 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.30 60.06 0.56 0.79 16 2 N -0.52 -5.91 4.53 -235.97 -1.07 -6.98 16 3 C 0.02 0.15 5.66 -3.72 -0.02 0.13 16 4 C 0.06 0.50 7.01 37.20 0.26 0.76 16 5 O -0.38 -4.00 10.83 -35.23 -0.38 -4.38 16 6 C 0.08 0.79 6.13 37.21 0.23 1.02 16 7 C 0.03 0.32 1.52 -68.75 -0.10 0.22 16 8 H 0.08 0.85 6.42 -51.93 -0.33 0.52 16 9 C 0.52 7.08 5.80 -10.99 -0.06 7.02 16 10 O -0.53 -8.68 14.77 5.55 0.08 -8.60 16 11 N -0.61 -7.78 2.98 -173.02 -0.52 -8.29 16 12 C 0.10 1.21 5.93 -3.93 -0.02 1.19 16 13 C -0.15 -2.33 5.64 -26.83 -0.15 -2.49 16 14 C 0.18 3.23 2.73 -67.89 -0.19 3.05 16 15 N -0.75 -16.83 4.92 -53.39 -0.26 -17.09 16 16 C -0.25 -6.65 10.41 -15.06 -0.16 -6.80 16 17 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 20 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 24 C -0.14 -2.12 5.55 -26.61 -0.15 -2.26 16 25 C 0.12 1.54 6.42 -3.71 -0.02 1.51 16 26 H 0.03 0.28 8.13 -51.93 -0.42 -0.15 16 27 H 0.08 1.05 5.97 -51.93 -0.31 0.74 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.94 7.49 -51.93 -0.39 0.56 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.82 5.10 -51.93 -0.27 0.55 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 40 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.20 7.04 -51.93 -0.37 0.84 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -32.48 346.03 -8.20 -40.68 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.40 Total: 6.15 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 0.07 Total: 4.21 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -1.07 Total: -60.26 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.30 Total: -12.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.48 -8.20 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991374699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.194 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds