Wall clock time and date at job start Tue Mar 31 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47013 * 111.00113 * 2 1 4 4 C 1.53090 * 109.26013 * 177.60575 * 3 2 1 5 5 O 1.43018 * 109.25985 * 56.85108 * 4 3 2 6 6 C 1.43009 * 113.73724 * 301.33047 * 5 4 3 7 7 C 1.47013 * 111.00186 * 236.36707 * 2 1 3 8 8 H 1.08997 * 109.50911 * 62.45308 * 7 2 1 9 9 C 1.50701 * 109.50687 * 302.32692 * 7 2 1 10 10 O 1.21288 * 119.99551 * 333.92606 * 9 7 2 11 11 N 1.34776 * 120.00468 * 153.92570 * 9 7 2 12 12 C 1.46928 * 120.62468 * 5.02521 * 11 9 7 13 13 C 1.52766 * 109.00584 * 233.58291 * 12 11 9 14 14 C 1.53042 * 109.38018 * 305.58983 * 13 12 11 15 15 N 1.46500 * 109.45536 * 181.25903 * 14 13 12 16 16 C 1.36942 * 120.00163 * 84.93545 * 15 14 13 17 17 H 1.08003 * 119.99652 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00098 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99958 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00376 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47624 * 89.99384 * 20 18 16 22 22 H 1.48496 * 109.47404 * 210.00068 * 20 18 16 23 23 H 1.48502 * 109.46695 * 329.99720 * 20 18 16 24 24 C 1.53037 * 109.53916 * 61.24300 * 14 13 12 25 25 C 1.46920 * 120.63235 * 185.30043 * 11 9 7 26 26 H 1.09004 * 109.46609 * 55.58855 * 1 2 3 27 27 H 1.09006 * 109.46973 * 175.58400 * 1 2 3 28 28 H 1.08997 * 109.47463 * 295.58453 * 1 2 3 29 29 H 1.09002 * 109.50632 * 297.54285 * 3 2 1 30 30 H 1.09005 * 109.50543 * 57.67232 * 3 2 1 31 31 H 1.09004 * 109.50614 * 176.78331 * 4 3 2 32 32 H 1.08997 * 109.51069 * 296.86857 * 4 3 2 33 33 H 1.09000 * 109.50783 * 178.60235 * 6 5 4 34 34 H 1.09001 * 109.50801 * 298.69245 * 6 5 4 35 35 H 1.08997 * 109.58905 * 353.41718 * 12 11 9 36 36 H 1.08997 * 109.58766 * 113.84324 * 12 11 9 37 37 H 1.08994 * 109.56546 * 185.55278 * 13 12 11 38 38 H 1.09001 * 109.35799 * 65.49869 * 13 12 11 39 39 H 1.08995 * 109.46239 * 301.21856 * 14 13 12 40 40 H 0.97004 * 120.00236 * 264.93021 * 15 14 13 41 41 H 0.97003 * 119.99873 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.49911 * 178.68018 * 24 14 13 43 43 H 1.08996 * 109.52730 * 58.59799 * 24 14 13 44 44 H 1.09005 * 109.59049 * 246.15432 * 25 11 9 45 45 H 1.09000 * 109.58628 * 6.58691 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 0.0604 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7848 -1.0709 7 6 1.9959 -0.7602 -1.1427 8 1 1.6828 -0.2843 -2.0720 9 6 1.4671 -2.1706 -1.0957 10 8 1.1425 -2.6614 -0.0351 11 7 1.3548 -2.8865 -2.2321 12 6 1.8453 -2.3474 -3.5079 13 6 0.7181 -2.4026 -4.5375 14 6 0.1792 -3.8324 -4.6244 15 7 -0.8816 -3.8935 -5.6329 16 6 -0.5623 -4.0722 -6.9526 17 1 0.4716 -4.1675 -7.2498 18 6 -1.5674 -4.1307 -7.9081 19 7 -1.2605 -4.3018 -9.1765 20 14 -3.3557 -3.9650 -7.3941 21 1 -3.7496 -2.5337 -7.4268 22 1 -4.2131 -4.7360 -8.3298 23 1 -3.5258 -4.4939 -6.0169 24 6 -0.3855 -4.2500 -3.2647 25 6 0.7343 -4.2182 -2.2196 26 1 -0.3633 0.5808 -0.8479 27 1 -0.3633 -1.0247 -0.0791 28 1 -0.3634 0.4438 0.9269 29 1 1.6828 1.8825 -0.9110 30 1 1.6134 1.9092 0.8682 31 1 3.9221 2.3399 0.0030 32 1 3.8385 0.8651 0.9968 33 1 3.9223 -1.2984 -1.9465 34 1 3.8392 -1.3085 -0.1681 35 1 2.1622 -1.3137 -3.3701 36 1 2.6861 -2.9459 -3.8583 37 1 1.0987 -2.0974 -5.5121 38 1 -0.0833 -1.7297 -4.2323 39 1 0.9866 -4.5084 -4.9054 40 1 -1.8103 -3.8076 -5.3660 41 1 -1.9629 -4.3431 -9.8442 42 1 -0.7902 -5.2597 -3.3334 43 1 -1.1766 -3.5602 -2.9712 44 1 1.4827 -4.9724 -2.4630 45 1 0.3184 -4.4183 -1.2322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991374699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:04 Heat of formation + Delta-G solvation = -70.397584 kcal Electronic energy + Delta-G solvation = -25511.321037 eV Core-core repulsion = 21949.637629 eV Total energy + Delta-G solvation = -3561.683408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86978 -40.11074 -38.75150 -36.66920 -36.24169 -34.06407 -33.01548 -31.78841 -31.42995 -29.82418 -26.94567 -25.65754 -25.29557 -24.34883 -23.86109 -22.28035 -21.35572 -20.22792 -19.46588 -18.51323 -17.61607 -17.56861 -16.78309 -16.72764 -16.24846 -16.11791 -15.88223 -15.67954 -15.39530 -14.98440 -14.91998 -14.86079 -14.52230 -14.29092 -13.96857 -13.64093 -13.33628 -13.32037 -13.17736 -12.94731 -12.72050 -12.64317 -12.33953 -12.16352 -12.08294 -12.04192 -11.79764 -11.72732 -11.36202 -11.07672 -10.94235 -10.60315 -9.73747 -9.49394 -9.31280 -8.01941 -5.35033 1.37386 1.39147 1.41804 1.46813 1.81010 2.47986 2.63405 2.84137 3.29542 3.37908 3.50458 3.67346 3.76590 3.88699 3.91308 4.02433 4.11558 4.16002 4.22816 4.29310 4.36406 4.42472 4.47888 4.54953 4.57240 4.60402 4.72400 4.77529 4.81465 4.82016 4.89244 4.93940 4.97206 5.02722 5.23508 5.42298 5.55337 5.69018 5.78436 5.84232 6.01298 6.22316 6.32428 7.06226 7.08165 7.84759 8.02553 9.19431 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.003574 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.748004 B = 7832.532224 C = 7937.973496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.535 5.535 3 C 0.018 3.982 4 C 0.056 3.944 5 O -0.389 6.389 6 C 0.080 3.920 7 C 0.032 3.968 8 H 0.078 0.922 9 C 0.524 3.476 10 O -0.557 6.557 11 N -0.605 5.605 12 C 0.110 3.890 13 C -0.142 4.142 14 C 0.176 3.824 15 N -0.753 5.753 16 C -0.224 4.224 17 H 0.062 0.938 18 C -0.063 4.063 19 N -0.984 5.984 20 Si 0.950 3.050 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.254 1.254 24 C -0.131 4.131 25 C 0.123 3.877 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.363 0.637 41 H 0.257 0.743 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 10.937 20.949 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.109 4.109 4 C -0.020 4.020 5 O -0.307 6.307 6 C 0.002 3.998 7 C -0.080 4.080 8 H 0.096 0.904 9 C 0.312 3.688 10 O -0.435 6.435 11 N -0.338 5.338 12 C -0.012 4.012 13 C -0.183 4.183 14 C 0.068 3.932 15 N -0.395 5.395 16 C -0.355 4.355 17 H 0.080 0.920 18 C -0.255 4.255 19 N -0.634 5.634 20 Si 0.778 3.222 21 H -0.208 1.208 22 H -0.225 1.225 23 H -0.179 1.179 24 C -0.170 4.170 25 C 0.000 4.000 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.195 0.805 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.743 10.473 21.625 25.569 hybrid contribution -1.960 0.185 -1.086 2.248 sum 6.783 10.658 20.539 24.114 Atomic orbital electron populations 1.22422 0.86230 1.01790 1.01871 1.61994 1.09009 1.14370 1.40726 1.22963 0.96802 0.88089 1.03062 1.22936 0.91903 0.97597 0.89574 1.88018 1.69655 1.23505 1.49511 1.22565 0.88599 0.84769 1.03882 1.22379 0.98693 0.92048 0.94912 0.90421 1.20421 0.77819 0.87420 0.83186 1.90672 1.50756 1.71850 1.30249 1.48262 1.59275 1.18261 1.07981 1.21887 0.96693 1.00834 0.81816 1.22360 0.98138 0.99106 0.98717 1.20398 0.90624 0.94724 0.87451 1.42850 1.04609 1.88690 1.03397 1.19037 0.93604 1.39576 0.83314 0.91967 1.25433 1.01960 1.02932 0.95130 1.69871 1.33176 1.59209 1.01179 0.85482 0.80979 0.77671 0.78062 1.20804 1.22524 1.17851 1.22112 0.98184 1.02443 0.94219 1.21552 0.95226 0.83507 0.99729 0.95035 0.92703 0.89501 0.93547 0.87268 0.85593 0.91918 0.86348 0.92142 0.88160 0.89119 0.91658 0.92931 0.92993 0.80452 0.93456 0.90144 0.92396 0.89656 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.30 127.69 1.19 1.70 16 2 N -0.53 -11.16 4.53 -900.47 -4.08 -15.24 16 3 C 0.02 0.27 5.66 86.31 0.49 0.76 16 4 C 0.06 0.78 7.01 72.01 0.50 1.29 16 5 O -0.39 -7.28 10.83 -148.98 -1.61 -8.89 16 6 C 0.08 1.48 6.13 72.02 0.44 1.92 16 7 C 0.03 0.67 1.52 44.18 0.07 0.74 16 8 H 0.08 1.58 6.42 -2.39 -0.02 1.57 16 9 C 0.52 13.36 5.80 87.66 0.51 13.87 16 10 O -0.56 -17.85 14.77 -3.05 -0.05 -17.89 16 11 N -0.60 -14.31 2.98 -819.71 -2.44 -16.75 16 12 C 0.11 2.38 5.93 86.22 0.51 2.89 16 13 C -0.14 -4.19 5.64 30.53 0.17 -4.02 16 14 C 0.18 5.99 2.73 45.02 0.12 6.11 16 15 N -0.75 -33.25 4.92 -322.82 -1.59 -34.84 16 16 C -0.22 -12.23 10.41 84.03 0.87 -11.36 16 17 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 18 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 19 N -0.98 -61.98 13.97 21.65 0.30 -61.68 16 20 Si 0.95 44.85 27.74 68.60 1.90 46.75 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 23 H -0.25 -10.84 6.52 99.48 0.65 -10.19 16 24 C -0.13 -3.66 5.55 30.67 0.17 -3.49 16 25 C 0.12 2.97 6.42 86.37 0.55 3.52 16 26 H 0.03 0.60 8.13 -2.38 -0.02 0.58 16 27 H 0.05 1.41 5.97 -2.38 -0.01 1.40 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 1.81 7.49 -2.39 -0.02 1.80 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.79 5.10 -2.39 -0.01 1.78 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 40 H 0.36 15.70 5.66 -92.70 -0.52 15.17 16 41 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.09 2.21 7.04 -2.39 -0.02 2.19 16 Total: -1.00 -70.59 346.03 -1.10 -71.69 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.39 Total: 26.10 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 6.07 Total: 10.75 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -7.80 Total: -128.51 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -1.66 Total: -26.78 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Total: -70.59 -1.10 -71.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991374699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.291 kcal (2) G-P(sol) polarization free energy of solvation -70.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds