Wall clock time and date at job start Tue Mar 31 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34782 * 119.99883 * 2 1 4 4 O 1.21280 * 119.99936 * 4.90392 * 3 2 1 5 5 C 1.50697 * 120.00222 * 184.90077 * 3 2 1 6 6 H 1.09006 * 109.54202 * 325.90105 * 5 3 2 7 7 C 1.53100 * 109.50614 * 86.00542 * 5 3 2 8 8 O 1.43016 * 109.26035 * 176.78442 * 7 5 3 9 9 C 1.43010 * 113.73612 * 301.33454 * 8 7 5 10 10 C 1.53092 * 109.26212 * 58.66885 * 9 8 7 11 11 N 1.47010 * 109.51100 * 205.78840 * 5 3 2 12 12 C 1.46905 * 110.99556 * 57.67424 * 11 5 3 13 13 C 1.46503 * 120.00126 * 180.02562 * 2 1 3 14 14 C 1.53774 * 113.61418 * 37.49729 * 13 2 1 15 15 C 1.53787 * 87.08074 * 220.02172 * 14 13 2 16 16 N 1.46498 * 113.61659 * 139.98095 * 15 14 13 17 17 C 1.36937 * 119.99665 * 107.50169 * 16 15 14 18 18 H 1.07991 * 120.00293 * 0.02562 * 17 16 15 19 19 C 1.38821 * 119.99802 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99871 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00049 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47154 * 90.00302 * 21 19 17 23 23 H 1.48497 * 109.47009 * 210.00008 * 21 19 17 24 24 H 1.48505 * 109.46948 * 329.99905 * 21 19 17 25 25 C 1.53778 * 113.61067 * 299.99753 * 13 2 1 26 26 H 1.09002 * 109.47208 * 84.95331 * 1 2 3 27 27 H 1.09000 * 109.46889 * 204.95292 * 1 2 3 28 28 H 1.08998 * 109.47011 * 324.95573 * 1 2 3 29 29 H 1.08998 * 109.50490 * 56.84965 * 7 5 3 30 30 H 1.09006 * 109.50445 * 296.72068 * 7 5 3 31 31 H 1.08997 * 109.50924 * 298.72882 * 9 8 7 32 32 H 1.09004 * 109.54252 * 178.62304 * 9 8 7 33 33 H 1.09004 * 109.51202 * 183.21651 * 10 9 8 34 34 H 1.09000 * 109.54704 * 63.10535 * 10 9 8 35 35 H 1.09003 * 109.46676 * 177.68162 * 12 11 5 36 36 H 1.08994 * 109.47272 * 57.67824 * 12 11 5 37 37 H 1.09000 * 109.47167 * 297.67819 * 12 11 5 38 38 H 1.09004 * 112.84846 * 168.80567 * 13 2 1 39 39 H 1.09006 * 113.61664 * 334.56439 * 14 13 2 40 40 H 1.08997 * 113.61907 * 105.46949 * 14 13 2 41 41 H 1.08999 * 113.68809 * 270.87705 * 15 14 13 42 42 H 0.97002 * 119.99764 * 287.50485 * 16 15 14 43 43 H 0.96992 * 119.99905 * 180.02562 * 20 19 17 44 44 H 1.08996 * 113.61531 * 254.53126 * 25 13 2 45 45 H 1.08997 * 113.61557 * 25.35178 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5358 2.2156 0.0898 5 6 3.6418 1.1697 -0.1115 6 1 4.0467 0.2959 0.3990 7 6 4.0449 1.1316 -1.5880 8 8 5.4693 1.2098 -1.6902 9 6 6.0250 2.3876 -1.0994 10 6 5.6420 2.4384 0.3820 11 7 4.1779 2.3913 0.5061 12 6 3.7651 2.4951 1.9122 13 6 2.1976 -1.2687 -0.0006 14 6 1.5375 -2.3607 -0.8587 15 6 1.9130 -3.3526 0.2549 16 7 0.8718 -4.3450 0.5326 17 6 1.0457 -5.6467 0.1446 18 1 1.9506 -5.9418 -0.3657 19 6 0.0593 -6.5872 0.4082 20 7 -1.0433 -6.2277 1.0306 21 14 0.2968 -8.3630 -0.1204 22 1 0.9614 -9.1197 0.9709 23 1 -1.0250 -8.9736 -0.4122 24 1 1.1427 -8.4075 -1.3401 25 6 1.8955 -2.1549 1.2193 26 1 -0.3634 0.0904 -1.0237 27 1 -0.3633 -0.9317 0.4335 28 1 -0.3633 0.8413 0.5901 29 1 3.5956 1.9765 -2.1098 30 1 3.6984 0.2002 -2.0359 31 1 5.6334 3.2691 -1.6070 32 1 7.1107 2.3655 -1.1940 33 1 6.0151 3.3628 0.8230 34 1 6.0789 1.5853 0.9011 35 1 4.2090 3.3861 2.3563 36 1 4.1013 1.6121 2.4556 37 1 2.6787 2.5641 1.9678 38 1 3.2626 -1.1425 -0.1955 39 1 0.4624 -2.2291 -0.9818 40 1 2.0528 -2.5466 -1.8011 41 1 2.8999 -3.7981 0.1301 42 1 0.0592 -4.0800 0.9912 43 1 -1.7324 -6.8849 1.2151 44 1 2.6998 -2.1746 1.9546 45 1 0.9190 -1.9660 1.6652 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998657389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:34 Heat of formation + Delta-G solvation = -21.770046 kcal Electronic energy + Delta-G solvation = -25302.163681 eV Core-core repulsion = 21742.588921 eV Total energy + Delta-G solvation = -3559.574760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87594 -39.26429 -38.09582 -35.82079 -34.61160 -32.94392 -31.90564 -29.97957 -29.21285 -27.29420 -25.28289 -24.87621 -24.45549 -24.26234 -22.56800 -21.13937 -19.50215 -18.74035 -17.57744 -17.16043 -16.76523 -16.59978 -15.99802 -15.42734 -15.04906 -14.98994 -14.84780 -14.56573 -14.27918 -14.04398 -13.40569 -13.32949 -13.00450 -12.80436 -12.53961 -12.36021 -12.19508 -11.99011 -11.89450 -11.82773 -11.49031 -11.35034 -11.00102 -10.95405 -10.65901 -10.54330 -10.37524 -10.17610 -10.04362 -9.76982 -9.50648 -8.96653 -8.66055 -8.48335 -7.06104 -5.85892 -3.15482 2.49036 2.86603 3.38592 3.44224 3.44911 3.45738 3.64969 4.35585 4.50709 4.53617 4.63574 4.71199 4.86535 4.90755 4.91947 4.98722 5.10245 5.25833 5.26934 5.28952 5.37262 5.39684 5.48014 5.49212 5.63013 5.66285 5.74938 5.79722 5.83633 5.89724 5.97723 6.19282 6.20014 6.29188 6.44706 6.52388 6.63464 6.70902 6.77727 6.89271 7.45273 7.62862 8.15985 8.32137 9.43745 9.99422 10.33675 11.36306 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.003330 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.772940 B = 8405.341110 C = 8915.736897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.596 5.596 3 C 0.519 3.481 4 O -0.526 6.526 5 C 0.029 3.971 6 H 0.074 0.926 7 C 0.077 3.923 8 O -0.377 6.377 9 C 0.060 3.940 10 C 0.018 3.982 11 N -0.519 5.519 12 C 0.020 3.980 13 C 0.100 3.900 14 C -0.173 4.173 15 C 0.170 3.830 16 N -0.709 5.709 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.164 4.164 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.063 0.937 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.043 17.358 -1.718 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.328 5.328 3 C 0.305 3.695 4 O -0.402 6.402 5 C -0.083 4.083 6 H 0.092 0.908 7 C -0.001 4.001 8 O -0.295 6.295 9 C -0.017 4.017 10 C -0.111 4.111 11 N -0.245 5.245 12 C -0.128 4.128 13 C -0.004 4.004 14 C -0.215 4.215 15 C 0.057 3.943 16 N -0.347 5.347 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.204 4.204 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.650 17.972 -2.065 21.517 hybrid contribution -0.067 -1.451 0.580 1.564 sum 11.582 16.521 -1.485 20.232 Atomic orbital electron populations 1.21620 0.78839 1.03297 1.01966 1.47917 1.07134 1.05673 1.72082 1.20112 0.88835 0.83640 0.76880 1.90677 1.69726 1.31113 1.48715 1.22397 0.93494 0.93510 0.98887 0.90800 1.22550 0.81678 1.03603 0.92253 1.88034 1.20008 1.42659 1.78792 1.22726 0.98950 0.88475 0.91557 1.22864 0.87713 1.02328 0.98152 1.61966 1.09529 1.35650 1.17361 1.22501 1.03088 1.00572 0.86650 1.22856 0.96311 0.81410 0.99814 1.24339 1.01419 0.96160 0.99613 1.21347 0.93847 0.87302 0.91806 1.42354 1.18438 1.05253 1.68644 1.19299 1.02140 0.85176 1.31228 0.90953 1.24774 0.96593 0.98332 1.00999 1.69653 1.08217 1.33745 1.46300 0.86183 0.76856 0.84915 0.78185 1.21642 1.21733 1.20640 1.23961 1.02165 0.97296 0.96964 0.92635 0.90103 0.91060 0.91437 0.87584 0.91974 0.88100 0.89122 0.93658 0.90990 0.95559 0.89958 0.87428 0.89519 0.91863 0.90195 0.78053 0.93372 0.91805 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 9.12 59.85 0.55 1.67 16 2 N -0.60 -8.00 3.08 -173.00 -0.53 -8.53 16 3 C 0.52 7.30 5.94 -10.98 -0.07 7.23 16 4 O -0.53 -8.92 14.84 5.56 0.08 -8.84 16 5 C 0.03 0.35 1.56 -68.75 -0.11 0.24 16 6 H 0.07 0.86 6.28 -51.93 -0.33 0.53 16 7 C 0.08 0.86 6.18 37.21 0.23 1.09 16 8 O -0.38 -4.20 10.83 -35.23 -0.38 -4.58 16 9 C 0.06 0.51 7.01 37.21 0.26 0.78 16 10 C 0.02 0.15 5.66 -3.72 -0.02 0.13 16 11 N -0.52 -5.98 4.53 -235.97 -1.07 -7.05 16 12 C 0.02 0.21 9.14 60.07 0.55 0.76 16 13 C 0.10 1.31 3.96 -67.12 -0.27 1.05 16 14 C -0.17 -2.67 7.28 -25.92 -0.19 -2.86 16 15 C 0.17 3.06 4.48 -67.12 -0.30 2.76 16 16 N -0.71 -16.74 5.40 -52.64 -0.28 -17.02 16 17 C -0.25 -6.57 9.97 -15.06 -0.15 -6.72 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 21 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.16 -2.45 7.35 -25.92 -0.19 -2.64 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.08 6.15 -51.93 -0.32 0.76 16 28 H 0.07 0.95 7.51 -51.93 -0.39 0.56 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.11 1.10 7.90 -51.93 -0.41 0.69 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 1.08 6.20 -51.93 -0.32 0.75 16 38 H 0.11 1.25 5.49 -51.93 -0.29 0.96 16 39 H 0.09 1.44 6.61 -51.93 -0.34 1.10 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 42 H 0.39 9.70 7.93 -40.82 -0.32 9.37 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.35 6.97 -51.93 -0.36 0.98 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -31.20 352.40 -8.25 -39.45 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.27 Total: 8.02 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.20 Total: 3.09 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -1.16 Total: -59.15 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.30 Total: -13.43 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.20 -8.25 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998657389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.680 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds