Wall clock time and date at job start Tue Mar 31 2020 04:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00196 * 2 1 4 4 O 1.21289 * 119.99839 * 5.39318 * 3 2 1 5 5 C 1.50700 * 120.00151 * 185.39013 * 3 2 1 6 6 H 1.09000 * 109.50727 * 33.26699 * 5 3 2 7 7 C 1.53101 * 109.50659 * 273.13255 * 5 3 2 8 8 O 1.43018 * 109.25697 * 183.21236 * 7 5 3 9 9 C 1.43018 * 113.73418 * 58.67602 * 8 7 5 10 10 C 1.53096 * 109.25903 * 301.32587 * 9 8 7 11 11 N 1.47010 * 109.25538 * 56.85188 * 10 9 8 12 12 C 1.46904 * 110.99995 * 177.60693 * 11 10 9 13 13 C 1.46500 * 119.99833 * 180.02562 * 2 1 3 14 14 C 1.53783 * 113.61761 * 59.99422 * 13 2 1 15 15 C 1.53781 * 87.08220 * 220.01944 * 14 13 2 16 16 N 1.46496 * 113.61535 * 270.79854 * 15 14 13 17 17 C 1.36936 * 120.00352 * 203.47083 * 16 15 14 18 18 H 1.08004 * 119.99376 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00358 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99832 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47334 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47349 * 120.00247 * 21 19 17 24 24 H 1.48504 * 109.47204 * 240.00575 * 21 19 17 25 25 C 1.53777 * 87.17046 * 25.39140 * 15 14 13 26 26 H 1.09001 * 109.46999 * 275.11095 * 1 2 3 27 27 H 1.08998 * 109.47316 * 35.10968 * 1 2 3 28 28 H 1.08995 * 109.47425 * 155.11333 * 1 2 3 29 29 H 1.09002 * 109.50897 * 303.15236 * 7 5 3 30 30 H 1.09003 * 109.49991 * 63.28385 * 7 5 3 31 31 H 1.09000 * 109.50210 * 181.38646 * 9 8 7 32 32 H 1.09008 * 109.54354 * 61.28641 * 9 8 7 33 33 H 1.08993 * 109.50519 * 296.91238 * 10 9 8 34 34 H 1.09001 * 109.50524 * 176.78649 * 10 9 8 35 35 H 1.08993 * 109.47339 * 188.32364 * 12 11 10 36 36 H 1.09000 * 109.46992 * 308.32551 * 12 11 10 37 37 H 1.09006 * 109.47078 * 68.31831 * 12 11 10 38 38 H 1.09000 * 112.85083 * 191.19649 * 13 2 1 39 39 H 1.09002 * 113.61041 * 105.46748 * 14 13 2 40 40 H 1.09001 * 113.69121 * 334.58374 * 14 13 2 41 41 H 1.08997 * 113.61176 * 139.98338 * 15 14 13 42 42 H 0.97005 * 120.00089 * 23.47105 * 16 15 14 43 43 H 0.96997 * 119.99569 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.61715 * 89.16053 * 25 15 14 45 45 H 1.09003 * 113.60964 * 220.05544 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5365 2.2152 0.0987 5 6 3.6409 1.1700 -0.1226 6 1 3.9562 0.3390 -0.7537 7 6 4.2675 1.0245 1.2667 8 8 5.6910 1.1030 1.1527 9 6 6.1554 2.3249 0.5723 10 6 5.5479 2.4836 -0.8240 11 7 4.0820 2.4373 -0.7230 12 6 3.4571 2.6431 -2.0365 13 6 2.1975 -1.2688 -0.0006 14 6 1.8953 -2.1541 -1.2211 15 6 1.9129 -3.3525 -0.2576 16 7 3.2392 -3.9516 -0.0903 17 6 3.3560 -5.2540 0.3161 18 1 2.4701 -5.8397 0.5129 19 6 4.6127 -5.8218 0.4741 20 7 5.6922 -5.1081 0.2338 21 14 4.7719 -7.5987 1.0278 22 1 3.4193 -8.1774 1.2296 23 1 5.4934 -8.3779 -0.0101 24 1 5.5296 -7.6536 2.3039 25 6 1.5385 -2.3632 0.8585 26 1 -0.3633 0.0916 1.0236 27 1 -0.3634 0.8407 -0.5910 28 1 -0.3634 -0.9322 -0.4324 29 1 3.9093 1.8256 1.9133 30 1 3.9891 0.0604 1.6923 31 1 7.2425 2.3013 0.4959 32 1 5.8528 3.1642 1.1985 33 1 5.8944 1.6736 -1.4658 34 1 5.8537 3.4404 -1.2473 35 1 2.3797 2.7518 -1.9133 36 1 3.8632 3.5449 -2.4948 37 1 3.6651 1.7854 -2.6762 38 1 3.2624 -1.1428 0.1945 39 1 2.6996 -2.1731 -1.9565 40 1 0.9185 -1.9666 -1.6671 41 1 1.1381 -4.0907 -0.4648 42 1 4.0348 -3.4256 -0.2674 43 1 6.5704 -5.5048 0.3446 44 1 0.4636 -2.2321 0.9835 45 1 2.0551 -2.5510 1.7998 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998657391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:36 Heat of formation + Delta-G solvation = -21.123314 kcal Electronic energy + Delta-G solvation = -25723.480013 eV Core-core repulsion = 22163.933298 eV Total energy + Delta-G solvation = -3559.546715 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77772 -39.16669 -38.06461 -35.66216 -34.60412 -32.85136 -31.76276 -29.79983 -29.08527 -27.26729 -25.26908 -24.81399 -24.30204 -24.14913 -22.86753 -21.02707 -19.43558 -18.33272 -17.77120 -17.05014 -16.59742 -16.46981 -15.85460 -15.26885 -15.00643 -14.88465 -14.76874 -14.59122 -14.06829 -13.87225 -13.35879 -13.26881 -12.96600 -12.75733 -12.46840 -12.29674 -12.18014 -12.00071 -11.96087 -11.79412 -11.45626 -11.32824 -10.93844 -10.82352 -10.76793 -10.38013 -10.21196 -10.06649 -9.83126 -9.76822 -9.42119 -8.98127 -8.54502 -8.44727 -7.08816 -5.85972 -3.16531 2.55520 2.93698 3.38718 3.44694 3.46891 3.63139 3.82546 4.47255 4.50615 4.68586 4.80679 4.92855 4.95245 5.01079 5.03296 5.10422 5.20419 5.35428 5.36665 5.38227 5.41243 5.46061 5.55708 5.59164 5.68367 5.72163 5.76932 5.79907 5.83195 5.87418 6.01150 6.11511 6.30415 6.35334 6.57493 6.63986 6.75438 6.77941 6.84031 7.01605 7.46818 7.64452 8.21374 8.31916 9.43173 9.97658 10.31604 11.36054 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.004523 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.684193 B = 6188.900118 C = 7369.198342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.601 5.601 3 C 0.522 3.478 4 O -0.528 6.528 5 C 0.030 3.970 6 H 0.076 0.924 7 C 0.076 3.924 8 O -0.371 6.371 9 C 0.060 3.940 10 C 0.017 3.983 11 N -0.519 5.519 12 C 0.020 3.980 13 C 0.108 3.892 14 C -0.169 4.169 15 C 0.172 3.828 16 N -0.705 5.705 17 C -0.247 4.247 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.179 4.179 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.026 0.974 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.385 0.615 43 H 0.257 0.743 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 14.435 -2.505 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.333 5.333 3 C 0.308 3.692 4 O -0.404 6.404 5 C -0.082 4.082 6 H 0.094 0.906 7 C -0.001 4.001 8 O -0.289 6.289 9 C -0.018 4.018 10 C -0.111 4.111 11 N -0.245 5.245 12 C -0.128 4.128 13 C 0.005 3.995 14 C -0.209 4.209 15 C 0.059 3.941 16 N -0.344 5.344 17 C -0.378 4.378 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.222 4.222 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.221 15.024 -2.034 16.035 hybrid contribution 0.528 -1.249 -0.473 1.437 sum -4.693 13.775 -2.507 14.767 Atomic orbital electron populations 1.21542 0.79402 1.02593 1.01815 1.48011 1.06880 1.06059 1.72367 1.20167 0.88941 0.83504 0.76575 1.90665 1.69828 1.31235 1.48690 1.22387 0.93234 0.92982 0.99644 0.90603 1.22580 0.81044 1.03451 0.93064 1.88107 1.20432 1.38266 1.82090 1.22725 0.99217 0.87449 0.92369 1.22871 0.87349 1.02356 0.98520 1.61981 1.06636 1.31910 1.23962 1.22486 1.01417 1.00487 0.88375 1.23029 0.96897 0.80691 0.98861 1.23961 1.01786 0.97763 0.97366 1.20922 0.90026 0.91356 0.91823 1.42195 1.00844 1.11592 1.79728 1.19298 0.92419 0.87978 1.38086 0.90848 1.24770 0.95384 0.98362 1.02026 1.69668 0.97134 1.35968 1.54874 0.86113 0.77519 0.84539 0.77952 1.20465 1.21807 1.21751 1.24322 0.99766 0.97114 1.00953 0.92767 0.91375 0.90622 0.91621 0.87502 0.88079 0.92133 0.93451 0.89196 0.90190 0.91078 0.95546 0.86952 0.91112 0.90114 0.91342 0.78082 0.93357 0.90628 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 9.04 59.85 0.54 1.59 16 2 N -0.60 -8.32 3.08 -172.90 -0.53 -8.85 16 3 C 0.52 7.90 5.93 -10.99 -0.07 7.84 16 4 O -0.53 -9.27 14.99 5.55 0.08 -9.18 16 5 C 0.03 0.42 1.51 -68.75 -0.10 0.32 16 6 H 0.08 1.13 6.74 -51.93 -0.35 0.78 16 7 C 0.08 1.08 6.08 37.21 0.23 1.31 16 8 O -0.37 -5.47 10.83 -35.23 -0.38 -5.85 16 9 C 0.06 0.67 7.01 37.21 0.26 0.93 16 10 C 0.02 0.19 5.65 -3.71 -0.02 0.17 16 11 N -0.52 -6.91 4.53 -235.97 -1.07 -7.98 16 12 C 0.02 0.24 9.13 60.07 0.55 0.79 16 13 C 0.11 1.59 3.61 -67.03 -0.24 1.35 16 14 C -0.17 -2.53 7.34 -25.92 -0.19 -2.72 16 15 C 0.17 3.11 4.55 -67.12 -0.31 2.80 16 16 N -0.71 -16.49 5.31 -52.64 -0.28 -16.77 16 17 C -0.25 -6.52 9.97 -15.06 -0.15 -6.67 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 21 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C -0.18 -2.80 7.29 -25.83 -0.19 -2.99 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 28 H 0.08 0.78 6.15 -51.93 -0.32 0.46 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 1.52 7.10 -51.93 -0.37 1.15 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.08 1.09 6.31 -51.93 -0.33 0.77 16 36 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.03 0.31 8.13 -51.93 -0.42 -0.11 16 38 H 0.11 1.80 5.10 -51.93 -0.26 1.53 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.05 7.00 -51.93 -0.36 0.69 16 41 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 42 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 1.02 6.62 -51.93 -0.34 0.67 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -31.04 351.40 -8.21 -39.26 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.25 Total: 9.42 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 0.21 Total: 4.38 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -1.16 Total: -59.97 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.30 Total: -15.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.04 -8.21 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998657391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.134 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds