Wall clock time and date at job start Tue Mar 31 2020 04:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00196 * 2 1 4 4 O 1.21289 * 119.99839 * 5.39318 * 3 2 1 5 5 C 1.50700 * 120.00151 * 185.39013 * 3 2 1 6 6 H 1.09000 * 109.50727 * 33.26699 * 5 3 2 7 7 C 1.53101 * 109.50659 * 273.13255 * 5 3 2 8 8 O 1.43018 * 109.25697 * 183.21236 * 7 5 3 9 9 C 1.43018 * 113.73418 * 58.67602 * 8 7 5 10 10 C 1.53096 * 109.25903 * 301.32587 * 9 8 7 11 11 N 1.47010 * 109.25538 * 56.85188 * 10 9 8 12 12 C 1.46904 * 110.99995 * 177.60693 * 11 10 9 13 13 C 1.46500 * 119.99833 * 180.02562 * 2 1 3 14 14 C 1.53783 * 113.61761 * 59.99422 * 13 2 1 15 15 C 1.53781 * 87.08220 * 220.01944 * 14 13 2 16 16 N 1.46496 * 113.61535 * 270.79854 * 15 14 13 17 17 C 1.36936 * 120.00352 * 203.47083 * 16 15 14 18 18 H 1.08004 * 119.99376 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00358 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99832 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47334 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47349 * 120.00247 * 21 19 17 24 24 H 1.48504 * 109.47204 * 240.00575 * 21 19 17 25 25 C 1.53777 * 87.17046 * 25.39140 * 15 14 13 26 26 H 1.09001 * 109.46999 * 275.11095 * 1 2 3 27 27 H 1.08998 * 109.47316 * 35.10968 * 1 2 3 28 28 H 1.08995 * 109.47425 * 155.11333 * 1 2 3 29 29 H 1.09002 * 109.50897 * 303.15236 * 7 5 3 30 30 H 1.09003 * 109.49991 * 63.28385 * 7 5 3 31 31 H 1.09000 * 109.50210 * 181.38646 * 9 8 7 32 32 H 1.09008 * 109.54354 * 61.28641 * 9 8 7 33 33 H 1.08993 * 109.50519 * 296.91238 * 10 9 8 34 34 H 1.09001 * 109.50524 * 176.78649 * 10 9 8 35 35 H 1.08993 * 109.47339 * 188.32364 * 12 11 10 36 36 H 1.09000 * 109.46992 * 308.32551 * 12 11 10 37 37 H 1.09006 * 109.47078 * 68.31831 * 12 11 10 38 38 H 1.09000 * 112.85083 * 191.19649 * 13 2 1 39 39 H 1.09002 * 113.61041 * 105.46748 * 14 13 2 40 40 H 1.09001 * 113.69121 * 334.58374 * 14 13 2 41 41 H 1.08997 * 113.61176 * 139.98338 * 15 14 13 42 42 H 0.97005 * 120.00089 * 23.47105 * 16 15 14 43 43 H 0.96997 * 119.99569 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.61715 * 89.16053 * 25 15 14 45 45 H 1.09003 * 113.60964 * 220.05544 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5365 2.2152 0.0987 5 6 3.6409 1.1700 -0.1226 6 1 3.9562 0.3390 -0.7537 7 6 4.2675 1.0245 1.2667 8 8 5.6910 1.1030 1.1527 9 6 6.1554 2.3249 0.5723 10 6 5.5479 2.4836 -0.8240 11 7 4.0820 2.4373 -0.7230 12 6 3.4571 2.6431 -2.0365 13 6 2.1975 -1.2688 -0.0006 14 6 1.8953 -2.1541 -1.2211 15 6 1.9129 -3.3525 -0.2576 16 7 3.2392 -3.9516 -0.0903 17 6 3.3560 -5.2540 0.3161 18 1 2.4701 -5.8397 0.5129 19 6 4.6127 -5.8218 0.4741 20 7 5.6922 -5.1081 0.2338 21 14 4.7719 -7.5987 1.0278 22 1 3.4193 -8.1774 1.2296 23 1 5.4934 -8.3779 -0.0101 24 1 5.5296 -7.6536 2.3039 25 6 1.5385 -2.3632 0.8585 26 1 -0.3633 0.0916 1.0236 27 1 -0.3634 0.8407 -0.5910 28 1 -0.3634 -0.9322 -0.4324 29 1 3.9093 1.8256 1.9133 30 1 3.9891 0.0604 1.6923 31 1 7.2425 2.3013 0.4959 32 1 5.8528 3.1642 1.1985 33 1 5.8944 1.6736 -1.4658 34 1 5.8537 3.4404 -1.2473 35 1 2.3797 2.7518 -1.9133 36 1 3.8632 3.5449 -2.4948 37 1 3.6651 1.7854 -2.6762 38 1 3.2624 -1.1428 0.1945 39 1 2.6996 -2.1731 -1.9565 40 1 0.9185 -1.9666 -1.6671 41 1 1.1381 -4.0907 -0.4648 42 1 4.0348 -3.4256 -0.2674 43 1 6.5704 -5.5048 0.3446 44 1 0.4636 -2.2321 0.9835 45 1 2.0551 -2.5510 1.7998 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998657391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:35 Heat of formation + Delta-G solvation = -43.916175 kcal Electronic energy + Delta-G solvation = -25724.468386 eV Core-core repulsion = 22163.933298 eV Total energy + Delta-G solvation = -3560.535088 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93399 -40.34442 -39.32461 -36.72477 -36.08648 -34.54916 -32.79458 -31.65459 -30.06112 -28.30706 -26.62247 -26.28262 -25.53150 -25.25303 -24.38227 -22.05145 -20.72811 -19.64991 -19.32910 -18.53199 -17.70353 -17.58868 -16.92306 -16.67948 -16.35725 -15.98318 -15.83665 -15.81745 -15.69221 -15.05851 -14.89733 -14.59551 -14.15742 -14.06564 -13.51182 -13.41886 -13.34598 -13.22660 -13.19406 -12.91501 -12.80400 -12.76260 -12.42114 -12.32084 -12.09857 -11.86596 -11.76690 -11.63822 -11.34509 -11.01863 -10.89367 -10.59916 -9.67220 -9.51529 -9.00850 -7.93446 -5.22387 1.36379 1.50098 1.50818 1.60251 1.82789 2.57282 2.61814 2.80446 3.35432 3.39460 3.59628 3.61054 3.78336 3.80748 3.86976 3.89682 4.10066 4.16536 4.20398 4.26834 4.40296 4.43171 4.44504 4.53619 4.57358 4.63154 4.76056 4.78528 4.81755 4.86020 4.87923 4.91023 5.01758 5.05571 5.24302 5.34935 5.54320 5.58597 5.66914 5.82673 6.00014 6.26388 6.31373 7.03682 7.35181 8.10042 8.31479 9.29772 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.004523 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.684193 B = 6188.900118 C = 7369.198342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.596 5.596 3 C 0.523 3.477 4 O -0.552 6.552 5 C 0.034 3.966 6 H 0.066 0.934 7 C 0.080 3.920 8 O -0.395 6.395 9 C 0.053 3.947 10 C 0.018 3.982 11 N -0.531 5.531 12 C 0.024 3.976 13 C 0.119 3.881 14 C -0.151 4.151 15 C 0.154 3.846 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.296 1.296 24 H -0.297 1.297 25 C -0.163 4.163 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.026 0.974 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.106 0.894 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.178 14.916 -2.872 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.327 5.327 3 C 0.310 3.690 4 O -0.430 6.430 5 C -0.079 4.079 6 H 0.083 0.917 7 C 0.002 3.998 8 O -0.313 6.313 9 C -0.023 4.023 10 C -0.109 4.109 11 N -0.257 5.257 12 C -0.124 4.124 13 C 0.015 3.985 14 C -0.190 4.190 15 C 0.043 3.957 16 N -0.358 5.358 17 C -0.372 4.372 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.618 5.618 21 Si 0.798 3.202 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.224 1.224 25 C -0.205 4.205 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.045 0.955 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.092 0.908 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.124 0.876 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.593 15.512 -2.406 17.025 hybrid contribution 0.857 -1.326 -0.376 1.623 sum -5.736 14.186 -2.782 15.552 Atomic orbital electron populations 1.21746 0.77803 1.03771 1.02524 1.48005 1.07826 1.05240 1.71668 1.20287 0.89224 0.83410 0.76089 1.90651 1.70334 1.32007 1.50054 1.22296 0.92754 0.93320 0.99483 0.91668 1.22486 0.81195 1.02949 0.93127 1.88072 1.20462 1.40171 1.82595 1.22990 1.00522 0.86385 0.92419 1.22962 0.86008 1.03576 0.98398 1.62027 1.07959 1.31078 1.24611 1.22464 1.00417 1.01558 0.87960 1.22773 0.96227 0.81007 0.98479 1.23833 1.02999 0.95591 0.96618 1.21193 0.87782 0.92537 0.94159 1.42340 1.02541 1.10870 1.80001 1.19694 0.92454 0.89178 1.35875 0.90144 1.25509 0.95366 1.02027 1.03533 1.69816 0.97270 1.37491 1.57250 0.85140 0.77809 0.80392 0.76815 1.18823 1.22326 1.22400 1.24152 1.01396 0.95941 0.99005 0.92107 0.91378 0.88482 0.91697 0.88353 0.85857 0.91462 0.94088 0.86453 0.91910 0.88834 0.95525 0.88531 0.92260 0.87124 0.90788 0.79444 0.94089 0.87568 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 9.04 127.77 1.16 2.90 16 2 N -0.60 -15.59 3.08 -819.32 -2.53 -18.12 16 3 C 0.52 15.48 5.93 87.66 0.52 16.00 16 4 O -0.55 -18.97 14.99 -3.06 -0.05 -19.02 16 5 C 0.03 0.96 1.51 44.18 0.07 1.02 16 6 H 0.07 1.97 6.74 -2.39 -0.02 1.95 16 7 C 0.08 2.31 6.08 72.02 0.44 2.75 16 8 O -0.39 -11.67 10.83 -148.98 -1.61 -13.28 16 9 C 0.05 1.14 7.01 72.01 0.50 1.65 16 10 C 0.02 0.38 5.65 86.31 0.49 0.86 16 11 N -0.53 -13.63 4.53 -900.48 -4.08 -17.71 16 12 C 0.02 0.54 9.13 127.69 1.17 1.71 16 13 C 0.12 3.36 3.61 45.58 0.16 3.53 16 14 C -0.15 -4.25 7.34 31.12 0.23 -4.02 16 15 C 0.15 5.36 4.55 45.52 0.21 5.56 16 16 N -0.72 -33.73 5.31 -320.46 -1.70 -35.43 16 17 C -0.24 -12.64 9.97 84.03 0.84 -11.80 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 20 N -0.97 -57.73 13.06 21.65 0.28 -57.44 16 21 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 C -0.16 -4.82 7.29 31.18 0.23 -4.59 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 28 H 0.10 1.61 6.15 -2.39 -0.01 1.59 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 2.91 7.10 -2.39 -0.02 2.89 16 31 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 1.79 8.10 -2.39 -0.02 1.77 16 35 H 0.06 1.67 6.31 -2.39 -0.02 1.65 16 36 H 0.09 1.69 8.07 -2.39 -0.02 1.67 16 37 H 0.03 0.60 8.13 -2.38 -0.02 0.58 16 38 H 0.10 3.12 5.10 -2.39 -0.01 3.11 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.11 2.49 7.00 -2.39 -0.02 2.47 16 41 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 42 H 0.37 19.05 7.90 -92.70 -0.73 18.32 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.11 2.50 6.62 -2.39 -0.02 2.48 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -66.92 351.40 -0.93 -67.85 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.26 Total: 34.26 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 6.47 Total: 12.04 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -8.02 Total: -128.70 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.66 Total: -32.30 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.92 -0.93 -67.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998657391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.931 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds