Wall clock time and date at job start Tue Mar 31 2020 04:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47013 * 110.99903 * 2 1 4 4 C 1.53095 * 109.25876 * 182.39333 * 3 2 1 5 5 O 1.43008 * 109.25633 * 303.14785 * 4 3 2 6 6 C 1.43010 * 113.74022 * 58.67692 * 5 4 3 7 7 H 1.08994 * 109.50947 * 61.30192 * 6 5 4 8 8 C 1.50705 * 109.51083 * 181.39437 * 6 5 4 9 9 O 1.21284 * 119.99639 * 4.99074 * 8 6 5 10 10 N 1.34771 * 120.00202 * 184.99936 * 8 6 5 11 11 C 1.46931 * 120.63145 * 359.97034 * 10 8 6 12 12 C 1.53191 * 108.76527 * 126.40558 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09006 * 109.49908 * 301.38992 * 14 13 12 16 16 N 1.46490 * 109.50100 * 181.32318 * 14 13 12 17 17 C 1.36941 * 120.00141 * 84.99448 * 16 14 13 18 18 H 1.07996 * 119.99953 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00322 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00324 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47570 * 59.99903 * 21 19 17 23 23 H 1.48502 * 109.47482 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46896 * 299.99900 * 21 19 17 25 25 C 1.46919 * 120.63242 * 179.97438 * 10 8 6 26 26 C 1.47005 * 111.00290 * 123.63191 * 2 1 3 27 27 H 1.08997 * 109.47181 * 56.05117 * 1 2 3 28 28 H 1.09005 * 109.47193 * 176.04605 * 1 2 3 29 29 H 1.08997 * 109.47373 * 296.04665 * 1 2 3 30 30 H 1.09001 * 109.51144 * 62.45373 * 3 2 1 31 31 H 1.09005 * 109.54473 * 302.34846 * 3 2 1 32 32 H 1.09004 * 109.50681 * 183.21327 * 4 3 2 33 33 H 1.09004 * 109.54349 * 63.11078 * 4 3 2 34 34 H 1.08998 * 109.58959 * 246.20295 * 11 10 8 35 35 H 1.09003 * 109.58181 * 6.48778 * 11 10 8 36 36 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 37 37 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 38 38 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 39 39 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 40 40 H 0.97000 * 120.00144 * 265.00314 * 16 14 13 41 41 H 0.97003 * 119.99880 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.59005 * 113.79701 * 25 10 8 43 43 H 1.09000 * 109.58835 * 353.37037 * 25 10 8 44 44 H 1.09004 * 109.50974 * 57.67372 * 26 2 1 45 45 H 1.09000 * 109.51389 * 297.54794 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0604 5 8 4.0174 0.5576 1.0403 6 6 3.5250 -0.7848 1.0709 7 1 3.8392 -1.3084 0.1681 8 6 4.0742 -1.4948 2.2815 9 8 4.7403 -0.8856 3.0915 10 7 3.8252 -2.8067 2.4639 11 6 3.0195 -3.5581 1.4917 12 6 3.8118 -4.7898 1.0423 13 6 4.2288 -5.5997 2.2721 14 6 5.1307 -4.7452 3.1656 15 1 6.0074 -4.4282 2.6007 16 7 5.5551 -5.5313 4.3266 17 6 6.6467 -6.3531 4.2351 18 1 7.1949 -6.4213 3.3072 19 6 7.0485 -7.0984 5.3351 20 7 6.3800 -7.0156 6.4659 21 14 8.5379 -8.2189 5.2105 22 1 9.7365 -7.4127 4.8663 23 1 8.7557 -8.8994 6.5123 24 1 8.3052 -9.2359 4.1536 25 6 4.3542 -3.5128 3.6387 26 6 1.9959 -0.7601 1.1427 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3634 -1.0253 -0.0709 29 1 -0.3634 0.4512 0.9233 30 1 1.6827 1.8826 0.9109 31 1 1.6133 1.9099 -0.8678 32 1 3.9221 2.3399 -0.0030 33 1 3.8391 0.8649 -0.9965 34 1 2.0858 -3.8737 1.9571 35 1 2.8032 -2.9260 0.6304 36 1 4.7007 -4.4720 0.4974 37 1 3.1886 -5.4066 0.3947 38 1 4.7713 -6.4899 1.9538 39 1 3.3405 -5.8959 2.8301 40 1 5.0628 -5.4698 5.1602 41 1 6.6606 -7.5367 7.2344 42 1 3.5295 -3.8247 4.2796 43 1 5.0205 -2.8518 4.1929 44 1 1.6134 -1.7803 1.1087 45 1 1.6828 -0.2843 2.0720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998813101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:41 Heat of formation + Delta-G solvation = -73.881681 kcal Electronic energy + Delta-G solvation = -25249.872745 eV Core-core repulsion = 21688.038255 eV Total energy + Delta-G solvation = -3561.834490 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.79718 -40.13821 -38.63827 -36.75645 -36.24412 -34.08251 -32.82413 -32.52744 -30.29222 -29.47771 -27.07559 -26.02284 -25.15362 -25.01423 -23.40743 -21.95855 -21.34613 -20.35730 -19.18624 -18.54525 -17.73056 -17.21920 -17.00931 -16.56479 -16.32004 -16.02465 -15.80092 -15.50929 -15.44847 -15.13717 -14.90133 -14.77035 -14.64484 -14.23180 -13.89997 -13.64057 -13.29859 -13.02964 -12.86497 -12.84080 -12.76599 -12.49590 -12.30955 -12.19643 -12.10598 -11.86328 -11.81083 -11.69024 -11.59098 -10.91029 -10.80844 -10.76911 -9.75527 -9.51836 -9.03964 -7.96134 -5.25791 1.39261 1.45999 1.49441 1.54979 1.60747 2.54992 2.69078 2.85131 3.36572 3.44587 3.61108 3.76003 3.86650 3.95266 4.01102 4.02699 4.09138 4.16408 4.24392 4.30108 4.35018 4.44291 4.53427 4.61514 4.63872 4.67682 4.74099 4.78728 4.83232 4.86054 4.91161 5.05024 5.06456 5.15866 5.38386 5.40805 5.49217 5.59445 5.77378 5.89093 5.98770 6.25468 6.33447 7.02764 7.31408 8.04107 8.28497 9.27013 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.031549 B = 0.003217 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.285567 B = 8701.648960 C = 9038.645218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.015 3.985 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.088 3.912 7 H 0.114 0.886 8 C 0.513 3.487 9 O -0.577 6.577 10 N -0.596 5.596 11 C 0.096 3.904 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.167 3.833 15 H 0.030 0.970 16 N -0.735 5.735 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.274 1.274 25 C 0.119 3.881 26 C 0.029 3.971 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.024 0.976 30 H 0.034 0.966 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.120 0.880 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.880 13.852 -19.730 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.113 4.113 4 C -0.021 4.021 5 O -0.312 6.312 6 C 0.026 3.974 7 H 0.131 0.869 8 C 0.300 3.700 9 O -0.455 6.455 10 N -0.330 5.330 11 C -0.025 4.025 12 C -0.163 4.163 13 C -0.168 4.168 14 C 0.057 3.943 15 H 0.048 0.952 16 N -0.376 5.376 17 C -0.373 4.373 18 H 0.091 0.909 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.200 1.200 25 C -0.005 4.005 26 C -0.100 4.100 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.138 0.862 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -15.104 13.946 -19.672 28.453 hybrid contribution 0.589 -0.347 1.626 1.764 sum -14.515 13.599 -18.046 26.856 Atomic orbital electron populations 1.22499 0.84853 1.03862 1.01323 1.62302 1.09874 1.13743 1.40570 1.22906 0.95905 0.89839 1.02673 1.23028 0.93004 0.96934 0.89160 1.88102 1.70302 1.22494 1.50268 1.21886 0.94254 0.85162 0.96056 0.86886 1.20785 0.79925 0.82066 0.87196 1.90702 1.41019 1.66731 1.47086 1.48077 1.52181 1.07939 1.24761 1.22364 0.94118 0.93716 0.92285 1.21906 1.00885 0.96342 0.97124 1.22075 0.99395 0.98637 0.96667 1.20634 0.94780 0.90037 0.88810 0.95194 1.42473 1.33566 1.50564 1.10953 1.19514 1.04314 1.16554 0.96902 0.90877 1.25557 1.02530 1.02817 0.95692 1.69811 1.43391 1.46215 1.02482 0.85221 0.79371 0.78757 0.76470 1.20787 1.22081 1.19999 1.21610 0.98027 0.93287 0.87527 1.22837 0.92317 1.01947 0.92898 0.89348 0.89677 0.95779 0.94790 0.86603 0.86522 0.90699 0.88764 0.86484 0.91980 0.87438 0.93422 0.92170 0.79445 0.93952 0.90703 0.92313 0.86175 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.61 127.69 1.23 1.43 16 2 N -0.54 -7.45 4.99 -921.45 -4.59 -12.04 16 3 C 0.01 0.20 5.66 86.31 0.49 0.68 16 4 C 0.05 0.89 7.01 72.01 0.50 1.40 16 5 O -0.39 -10.59 10.01 -130.02 -1.30 -11.89 16 6 C 0.09 2.05 2.38 29.88 0.07 2.12 16 7 H 0.11 2.14 7.43 -2.39 -0.02 2.12 16 8 C 0.51 16.52 7.12 87.66 0.62 17.15 16 9 O -0.58 -25.09 15.92 15.92 0.25 -24.84 16 10 N -0.60 -17.11 2.97 -818.99 -2.43 -19.54 16 11 C 0.10 1.77 5.05 86.36 0.44 2.21 16 12 C -0.12 -2.62 6.08 30.67 0.19 -2.43 16 13 C -0.13 -4.10 5.47 30.62 0.17 -3.93 16 14 C 0.17 6.74 2.92 45.06 0.13 6.88 16 15 H 0.03 1.32 8.08 -2.38 -0.02 1.30 16 16 N -0.74 -37.86 5.12 -322.65 -1.65 -39.51 16 17 C -0.24 -13.63 9.93 84.03 0.83 -12.79 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 20 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 21 Si 0.97 46.79 29.55 68.60 2.03 48.81 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 C 0.12 4.38 5.90 86.35 0.51 4.88 16 26 C 0.03 0.50 4.52 86.32 0.39 0.89 16 27 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.12 1.47 4.62 -2.39 -0.01 1.46 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.37 20.54 7.80 -92.71 -0.72 19.81 16 41 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.06 2.57 7.01 -2.39 -0.02 2.55 16 44 H 0.12 1.55 5.46 -2.39 -0.01 1.54 16 45 H 0.03 0.67 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -77.22 350.59 -1.13 -78.35 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.25 Total: 25.73 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.04 Total: 14.66 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -8.40 Total: -130.82 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.05 Total: -36.73 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -77.22 -1.13 -78.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998813101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.466 kcal (2) G-P(sol) polarization free energy of solvation -77.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds