Wall clock time and date at job start Tue Mar 31 2020 04:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47007 * 111.00006 * 2 1 4 4 C 1.53094 * 109.25683 * 177.60828 * 3 2 1 5 5 O 1.43020 * 109.26025 * 56.85162 * 4 3 2 6 6 C 1.43010 * 113.73319 * 301.33201 * 5 4 3 7 7 C 1.47016 * 110.99531 * 236.36591 * 2 1 3 8 8 H 1.09007 * 109.50831 * 62.45943 * 7 2 1 9 9 C 1.50704 * 109.50901 * 302.36907 * 7 2 1 10 10 O 1.21278 * 119.99782 * 333.47689 * 9 7 2 11 11 N 1.34772 * 119.99732 * 153.47207 * 9 7 2 12 12 C 1.46930 * 120.63499 * 5.23617 * 11 9 7 13 13 C 1.53190 * 108.77613 * 233.58924 * 12 11 9 14 14 C 1.53043 * 109.31083 * 305.36223 * 13 12 11 15 15 C 1.53032 * 109.53832 * 61.36903 * 14 13 12 16 16 H 1.08996 * 109.49919 * 58.61743 * 15 14 13 17 17 N 1.46502 * 109.49872 * 178.68508 * 15 14 13 18 18 C 1.36942 * 119.99489 * 274.99682 * 17 15 14 19 19 H 1.07996 * 120.00428 * 0.02562 * 18 17 15 20 20 C 1.38818 * 119.99490 * 179.97438 * 18 17 15 21 21 N 1.31611 * 120.00219 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99584 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47407 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47225 * 120.00064 * 22 20 18 25 25 H 1.48500 * 109.47273 * 240.00069 * 22 20 18 26 26 C 1.46927 * 120.63039 * 184.96061 * 11 9 7 27 27 H 1.09001 * 109.47381 * 65.74348 * 1 2 3 28 28 H 1.09001 * 109.46938 * 185.74524 * 1 2 3 29 29 H 1.08996 * 109.46773 * 305.74389 * 1 2 3 30 30 H 1.08998 * 109.50404 * 57.67445 * 3 2 1 31 31 H 1.08997 * 109.54408 * 297.56695 * 3 2 1 32 32 H 1.08995 * 109.51037 * 296.91445 * 4 3 2 33 33 H 1.09000 * 109.54166 * 176.80627 * 4 3 2 34 34 H 1.09004 * 109.50640 * 178.60290 * 6 5 4 35 35 H 1.09004 * 109.50866 * 298.72605 * 6 5 4 36 36 H 1.08998 * 109.58106 * 353.37316 * 12 11 9 37 37 H 1.09000 * 109.58428 * 113.79544 * 12 11 9 38 38 H 1.08993 * 109.49847 * 65.31415 * 13 12 11 39 39 H 1.09002 * 109.49370 * 185.38539 * 13 12 11 40 40 H 1.09005 * 109.46048 * 181.39045 * 14 13 12 41 41 H 1.09007 * 109.46171 * 301.34776 * 14 13 12 42 42 H 0.96993 * 120.00451 * 95.00060 * 17 15 14 43 43 H 0.97002 * 119.99999 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.58711 * 246.20761 * 26 11 9 45 45 H 1.09009 * 109.58401 * 6.62219 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5249 1.3263 0.0603 5 8 4.0175 0.5573 -1.0404 6 6 3.5249 -0.7849 -1.0710 7 6 1.9958 -0.7602 -1.1428 8 1 1.6827 -0.2842 -2.0721 9 6 1.4661 -2.1704 -1.0963 10 8 1.1486 -2.6641 -0.0351 11 7 1.3452 -2.8826 -2.2341 12 6 1.8312 -2.3420 -3.5110 13 6 0.6915 -2.3924 -4.5334 14 6 0.1526 -3.8221 -4.6206 15 6 -0.4019 -4.2440 -3.2581 16 1 -1.1914 -3.5552 -2.9575 17 7 -0.9460 -5.6011 -3.3505 18 6 -2.2296 -5.7959 -3.7860 19 1 -2.8407 -4.9493 -4.0617 20 6 -2.7449 -7.0819 -3.8741 21 7 -2.0000 -8.1138 -3.5386 22 14 -4.4956 -7.3477 -4.4688 23 1 -5.1167 -6.0357 -4.7818 24 1 -4.4806 -8.1917 -5.6906 25 1 -5.2812 -8.0272 -3.4075 26 6 0.7303 -4.2169 -2.2202 27 1 -0.3634 0.4222 -0.9369 28 1 -0.3633 -1.0225 0.1029 29 1 -0.3633 0.6003 0.8341 30 1 1.6134 1.9091 0.8682 31 1 1.6828 1.8832 -0.9106 32 1 3.8385 0.8643 0.9963 33 1 3.9228 2.3395 0.0034 34 1 3.9221 -1.2985 -1.9466 35 1 3.8385 -1.3085 -0.1679 36 1 2.1521 -1.3096 -3.3721 37 1 2.6684 -2.9424 -3.8669 38 1 -0.1078 -1.7207 -4.2205 39 1 1.0650 -2.0837 -5.5098 40 1 -0.6420 -3.8659 -5.3655 41 1 0.9584 -4.4970 -4.9094 42 1 -0.3971 -6.3616 -3.1032 43 1 -2.3600 -9.0124 -3.6005 44 1 1.4796 -4.9672 -2.4730 45 1 0.3248 -4.4221 -1.2294 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998965945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:06 Heat of formation + Delta-G solvation = -49.217742 kcal Electronic energy + Delta-G solvation = -25520.029304 eV Core-core repulsion = 21959.264323 eV Total energy + Delta-G solvation = -3560.764981 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80598 -39.09215 -37.34370 -35.73081 -34.56236 -32.44043 -31.69972 -31.14346 -29.17123 -28.21686 -25.74707 -24.50926 -24.44020 -23.64254 -22.09128 -21.31715 -19.88039 -18.92367 -17.42019 -17.22085 -16.73924 -16.65162 -15.81946 -15.34352 -15.16357 -14.82028 -14.40957 -14.39694 -14.10645 -14.01478 -13.59022 -13.51560 -13.07334 -12.97919 -12.80610 -12.53772 -12.30390 -12.19748 -11.90873 -11.49898 -11.12738 -10.99566 -10.98335 -10.93875 -10.68665 -10.44735 -10.39305 -10.16538 -10.05829 -9.75354 -9.50795 -8.94830 -8.61947 -8.43865 -7.01816 -5.80447 -3.10233 2.57934 2.90404 3.41227 3.43508 3.46915 3.49098 3.65307 4.38644 4.50547 4.55707 4.63559 4.66668 4.84288 4.90854 4.95116 5.09221 5.22528 5.25433 5.30187 5.33871 5.38076 5.45625 5.49338 5.51657 5.61728 5.64674 5.71798 5.77363 5.90203 5.99491 6.11243 6.20099 6.34462 6.47872 6.53702 6.65969 6.67456 6.75034 6.84335 7.00263 7.50684 7.66960 8.25707 8.37508 9.48781 10.03768 10.38808 11.42037 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.003440 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.145288 B = 8137.236616 C = 8406.396088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.018 3.982 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.076 3.924 7 C 0.031 3.969 8 H 0.072 0.928 9 C 0.519 3.481 10 O -0.518 6.518 11 N -0.604 5.604 12 C 0.102 3.898 13 C -0.133 4.133 14 C -0.137 4.137 15 C 0.169 3.831 16 H 0.049 0.951 17 N -0.721 5.721 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.107 3.893 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.066 0.934 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 19.993 2.972 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.245 5.245 3 C -0.110 4.110 4 C -0.017 4.017 5 O -0.297 6.297 6 C -0.002 4.002 7 C -0.082 4.082 8 H 0.090 0.910 9 C 0.305 3.695 10 O -0.393 6.393 11 N -0.339 5.339 12 C -0.021 4.021 13 C -0.172 4.172 14 C -0.178 4.178 15 C 0.058 3.942 16 H 0.067 0.933 17 N -0.362 5.362 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.016 4.016 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.773 19.557 3.805 23.142 hybrid contribution -1.379 -0.159 -1.004 1.713 sum 10.395 19.399 2.801 22.185 Atomic orbital electron populations 1.22516 0.85887 1.04151 1.00285 1.61951 1.09090 1.12616 1.40800 1.22853 0.96490 0.89576 1.02076 1.22731 0.92230 0.96501 0.90217 1.88007 1.69537 1.23559 1.48632 1.22566 0.89624 0.84388 1.03602 1.22386 0.97831 0.93636 0.94310 0.91003 1.20058 0.78861 0.86750 0.83862 1.90712 1.48872 1.70715 1.28987 1.48162 1.59794 1.18723 1.07191 1.21885 0.97277 0.98969 0.83942 1.21931 0.97715 0.99387 0.98155 1.22288 1.00759 0.93590 1.01150 1.20549 0.92890 0.89227 0.91492 0.93321 1.42319 1.13591 1.01100 1.79211 1.19241 0.89333 0.92213 1.36278 0.91132 1.24751 0.98315 0.95537 1.02181 1.69667 1.36031 0.97922 1.54246 0.86121 0.84461 0.77616 0.77996 1.20567 1.21842 1.21795 1.22114 0.95691 0.81560 1.02190 0.95630 0.89691 0.90915 0.89083 0.93805 0.91887 0.88143 0.87813 0.91263 0.90310 0.90961 0.92023 0.91237 0.91526 0.92362 0.78157 0.93471 0.91524 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.15 60.07 0.55 0.78 16 2 N -0.52 -6.18 4.53 -235.97 -1.07 -7.25 16 3 C 0.02 0.16 5.66 -3.72 -0.02 0.14 16 4 C 0.06 0.50 7.01 37.21 0.26 0.76 16 5 O -0.38 -3.95 10.83 -35.23 -0.38 -4.33 16 6 C 0.08 0.80 6.14 37.21 0.23 1.03 16 7 C 0.03 0.36 1.52 -68.75 -0.10 0.26 16 8 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 9 C 0.52 7.80 5.93 -10.99 -0.07 7.73 16 10 O -0.52 -9.78 14.70 5.56 0.08 -9.69 16 11 N -0.60 -8.69 2.97 -172.50 -0.51 -9.20 16 12 C 0.10 1.14 5.98 -3.71 -0.02 1.12 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C -0.14 -2.28 5.46 -26.69 -0.15 -2.42 16 15 C 0.17 3.31 2.94 -67.59 -0.20 3.11 16 16 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 17 N -0.72 -17.79 5.13 -53.09 -0.27 -18.06 16 18 C -0.24 -6.57 9.93 -15.05 -0.15 -6.72 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 C 0.11 1.87 5.92 -3.49 -0.02 1.85 16 27 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 1.25 6.22 -51.93 -0.32 0.93 16 29 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.93 7.53 -51.93 -0.39 0.53 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.71 5.11 -51.93 -0.27 0.45 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.84 7.04 -51.92 -0.37 1.47 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -32.30 349.41 -8.59 -40.89 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.45 Total: 6.91 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 0.05 Total: 5.40 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -1.13 Total: -61.69 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.30 Total: -14.02 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.30 -8.59 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998965945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.333 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds