Wall clock time and date at job start Tue Mar 31 2020 03:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46922 * 2 1 4 4 C 1.47014 * 111.00019 * 66.05054 * 3 2 1 5 5 C 1.53096 * 109.25675 * 182.39166 * 4 3 2 6 6 O 1.43015 * 109.25724 * 303.14825 * 5 4 3 7 7 C 1.43010 * 113.73980 * 58.67537 * 6 5 4 8 8 H 1.08993 * 109.51045 * 61.26026 * 7 6 5 9 9 C 1.50705 * 109.51080 * 181.39347 * 7 6 5 10 10 O 1.21283 * 119.99803 * 5.00137 * 9 7 6 11 11 N 1.34771 * 120.00049 * 184.99714 * 9 7 6 12 12 C 1.46507 * 119.99851 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.63914 * 325.70072 * 12 11 9 14 14 C 1.55152 * 110.71789 * 202.55773 * 12 11 9 15 15 C 1.55390 * 101.36814 * 277.04051 * 14 12 11 16 16 N 1.47423 * 104.87365 * 323.01866 * 15 14 12 17 17 C 1.36934 * 125.65178 * 204.16559 * 16 15 14 18 18 H 1.07999 * 120.00285 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99478 * 359.96084 * 17 16 15 20 20 N 1.31620 * 120.00415 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47226 * 89.99934 * 21 19 17 23 23 H 1.48507 * 109.47072 * 210.00142 * 21 19 17 24 24 H 1.48498 * 109.46867 * 329.99687 * 21 19 17 25 25 C 1.47031 * 108.70319 * 24.13106 * 16 15 14 26 26 C 1.47017 * 110.99765 * 189.68430 * 3 2 1 27 27 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46557 * 299.99423 * 1 2 3 29 29 H 1.08992 * 109.47213 * 59.99766 * 1 2 3 30 30 H 1.09003 * 109.46615 * 240.00023 * 2 1 3 31 31 H 1.09000 * 109.47117 * 120.00506 * 2 1 3 32 32 H 1.09004 * 109.50706 * 62.45483 * 4 3 2 33 33 H 1.08995 * 109.54210 * 302.34427 * 4 3 2 34 34 H 1.08997 * 109.50375 * 183.21864 * 5 4 3 35 35 H 1.08996 * 109.54637 * 63.10402 * 5 4 3 36 36 H 0.97002 * 120.00426 * 359.97438 * 11 9 7 37 37 H 1.09000 * 111.00743 * 35.21616 * 14 12 11 38 38 H 1.08999 * 111.00293 * 159.06285 * 14 12 11 39 39 H 1.09002 * 110.34113 * 204.16678 * 15 14 12 40 40 H 1.08995 * 110.43894 * 81.92165 * 15 14 12 41 41 H 0.96997 * 120.00277 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.88021 * 239.52258 * 25 16 15 43 43 H 1.08996 * 109.88226 * 118.35658 * 25 16 15 44 44 H 1.09006 * 109.50736 * 297.54404 * 26 3 2 45 45 H 1.08995 * 109.50709 * 57.63009 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0674 1.2543 5 6 2.1453 3.5212 1.1877 6 8 3.5521 3.5462 0.9317 7 6 3.9281 2.8910 -0.2825 8 1 3.4548 3.3908 -1.1276 9 6 5.4260 2.9439 -0.4401 10 8 6.1128 3.4075 0.4455 11 7 6.0022 2.4760 -1.5649 12 6 7.4584 2.5269 -1.7178 13 1 7.8644 3.4160 -1.2355 14 6 7.8546 2.4864 -3.2173 15 6 7.8112 0.9599 -3.5045 16 7 8.3236 0.3288 -2.2747 17 6 8.9015 -0.9101 -2.1944 18 1 9.2467 -1.2843 -1.2420 19 6 9.0432 -1.6850 -3.3373 20 7 8.6227 -1.2289 -4.4982 21 14 9.8309 -3.3753 -3.2279 22 1 8.7824 -4.3941 -2.9677 23 1 10.5162 -3.6860 -4.5082 24 1 10.8204 -3.3895 -2.1207 25 6 8.1122 1.2502 -1.1485 26 6 3.4708 1.4307 -0.2309 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.1553 1.5637 2.0903 33 1 0.5891 2.0439 1.3931 34 1 1.9393 4.0153 2.1371 35 1 1.6202 4.0402 0.3858 36 1 5.4529 2.1048 -2.2731 37 1 7.1285 3.0230 -3.8280 38 1 8.8584 2.8840 -3.3671 39 1 8.4519 0.7153 -4.3517 40 1 6.7880 0.6380 -3.6982 41 1 8.7215 -1.7706 -5.2967 42 1 9.0683 1.4974 -0.6873 43 1 7.4511 0.7914 -0.4133 44 1 3.9850 0.9168 0.5814 45 1 3.7045 0.9418 -1.1766 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016305393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:07 Heat of formation + Delta-G solvation = -41.435317 kcal Electronic energy + Delta-G solvation = -25172.685791 eV Core-core repulsion = 21612.258281 eV Total energy + Delta-G solvation = -3560.427510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39655 -38.96046 -37.16973 -36.21946 -33.87686 -32.31005 -31.30501 -31.07680 -29.17217 -27.65741 -26.65905 -24.66474 -24.39093 -22.80582 -20.89349 -20.47000 -20.20949 -19.78007 -17.51656 -16.89870 -16.69973 -16.21646 -15.67920 -15.51765 -15.36556 -14.69518 -14.67309 -14.26316 -14.12323 -13.79507 -13.67706 -13.28022 -12.90675 -12.54215 -12.28624 -12.17271 -12.02445 -11.94207 -11.64923 -11.62714 -11.11003 -11.08455 -10.94358 -10.89555 -10.78465 -10.40218 -10.13827 -9.90545 -9.86991 -9.61129 -9.45608 -8.76558 -8.68401 -8.62752 -6.86189 -5.68544 -3.09448 2.73747 2.94555 3.38218 3.43808 3.45602 3.50413 4.02426 4.47248 4.57726 4.66096 4.69427 4.85451 4.90584 5.00353 5.05639 5.18427 5.23130 5.32758 5.35620 5.43175 5.43757 5.48614 5.57293 5.63470 5.67225 5.73287 5.74252 5.85271 5.93446 6.25150 6.33608 6.47685 6.52870 6.63598 6.68491 6.70933 6.87086 7.05951 7.40451 7.60071 7.75280 7.81815 8.32157 8.44393 9.19748 9.80258 10.44714 11.35635 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.003992 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.017291 B = 7011.820222 C = 8156.326283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.012 3.988 5 C 0.063 3.937 6 O -0.356 6.356 7 C 0.080 3.920 8 H 0.091 0.909 9 C 0.520 3.480 10 O -0.524 6.524 11 N -0.706 5.706 12 C 0.132 3.868 13 H 0.089 0.911 14 C -0.153 4.153 15 C 0.152 3.848 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.029 3.971 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.011 0.989 41 H 0.252 0.748 42 H 0.032 0.968 43 H 0.025 0.975 44 H 0.051 0.949 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.191 7.497 6.080 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.261 5.261 4 C -0.117 4.117 5 C -0.014 4.014 6 O -0.274 6.274 7 C 0.019 3.981 8 H 0.109 0.891 9 C 0.304 3.696 10 O -0.399 6.399 11 N -0.359 5.359 12 C 0.028 3.972 13 H 0.107 0.893 14 C -0.193 4.193 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.000 4.000 26 C -0.100 4.100 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.029 0.971 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.706 7.991 6.346 18.730 hybrid contribution 0.190 -1.763 0.251 1.791 sum -15.516 6.228 6.598 17.974 Atomic orbital electron populations 1.21791 0.94593 1.01754 1.02374 1.22129 0.96190 0.88110 1.01531 1.62273 1.12836 1.16649 1.34305 1.22887 1.01849 0.95867 0.91058 1.22727 0.81595 0.95052 1.02032 1.88125 1.22964 1.76488 1.39781 1.21930 0.93196 0.93364 0.89646 0.89122 1.19951 0.88732 0.78391 0.82553 1.90708 1.64249 1.44701 1.40224 1.45902 1.08512 1.62467 1.18994 1.22018 0.78478 0.98813 0.97941 0.89272 1.23426 1.01067 1.01569 0.93189 1.22033 0.98026 0.84908 0.92357 1.44511 1.70352 1.15636 1.02475 1.19092 1.30930 0.90541 0.94302 0.90545 1.24757 1.01535 0.98890 0.95435 1.69774 1.52503 1.36724 0.98263 0.86077 0.78831 0.83771 0.76868 1.21712 1.21625 1.20692 1.21690 0.96969 0.89666 0.91629 1.22675 0.88147 0.95868 1.03301 0.92089 0.92792 0.91709 0.90113 0.94553 0.93713 0.89214 0.88012 0.92090 0.76474 0.91605 0.90515 0.87399 0.97123 0.93756 0.95027 0.95707 0.93021 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.84 37.16 0.37 -0.75 16 2 C 0.05 0.46 5.68 -3.82 -0.02 0.44 16 3 N -0.54 -5.70 4.73 -234.30 -1.11 -6.81 16 4 C 0.01 0.11 5.43 -3.71 -0.02 0.09 16 5 C 0.06 0.63 7.01 37.21 0.26 0.89 16 6 O -0.36 -5.11 10.01 -55.06 -0.55 -5.66 16 7 C 0.08 1.08 3.22 -27.83 -0.09 0.99 16 8 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 9 C 0.52 8.60 7.18 -10.99 -0.08 8.52 16 10 O -0.52 -10.77 16.19 -14.27 -0.23 -11.00 16 11 N -0.71 -11.13 5.07 -52.03 -0.26 -11.40 16 12 C 0.13 2.38 3.28 -66.09 -0.22 2.16 16 13 H 0.09 1.60 7.62 -51.93 -0.40 1.20 16 14 C -0.15 -2.73 6.69 -24.32 -0.16 -2.89 16 15 C 0.15 3.47 5.87 -2.27 -0.01 3.46 16 16 N -0.60 -15.20 3.40 -169.77 -0.58 -15.78 16 17 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.13 2.77 6.99 -3.06 -0.02 2.75 16 26 C 0.03 0.36 4.89 -3.71 -0.02 0.34 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 6.51 -51.93 -0.34 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 31 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.67 6.37 -51.93 -0.33 0.34 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.40 5.58 8.52 -40.82 -0.35 5.23 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.11 2.82 5.87 -51.93 -0.30 2.52 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 1.15 7.97 -51.93 -0.41 0.73 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -32.45 354.95 -9.70 -42.14 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.58 Total: 2.62 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -0.27 Total: 9.33 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -1.39 Total: -59.66 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.78 Total: -16.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.45 -9.70 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016305393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.706 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds