Wall clock time and date at job start Tue Mar 31 2020 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46922 * 2 1 4 4 C 1.47014 * 111.00019 * 66.05054 * 3 2 1 5 5 C 1.53096 * 109.25675 * 182.39166 * 4 3 2 6 6 O 1.43015 * 109.25724 * 303.14825 * 5 4 3 7 7 C 1.43010 * 113.73980 * 58.67537 * 6 5 4 8 8 H 1.08993 * 109.51045 * 61.26026 * 7 6 5 9 9 C 1.50705 * 109.51080 * 181.39347 * 7 6 5 10 10 O 1.21283 * 119.99803 * 5.00137 * 9 7 6 11 11 N 1.34771 * 120.00049 * 184.99714 * 9 7 6 12 12 C 1.46507 * 119.99851 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.63914 * 325.70072 * 12 11 9 14 14 C 1.55152 * 110.71789 * 202.55773 * 12 11 9 15 15 C 1.55390 * 101.36814 * 277.04051 * 14 12 11 16 16 N 1.47423 * 104.87365 * 323.01866 * 15 14 12 17 17 C 1.36934 * 125.65178 * 204.16559 * 16 15 14 18 18 H 1.07999 * 120.00285 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99478 * 359.96084 * 17 16 15 20 20 N 1.31620 * 120.00415 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47226 * 89.99934 * 21 19 17 23 23 H 1.48507 * 109.47072 * 210.00142 * 21 19 17 24 24 H 1.48498 * 109.46867 * 329.99687 * 21 19 17 25 25 C 1.47031 * 108.70319 * 24.13106 * 16 15 14 26 26 C 1.47017 * 110.99765 * 189.68430 * 3 2 1 27 27 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46557 * 299.99423 * 1 2 3 29 29 H 1.08992 * 109.47213 * 59.99766 * 1 2 3 30 30 H 1.09003 * 109.46615 * 240.00023 * 2 1 3 31 31 H 1.09000 * 109.47117 * 120.00506 * 2 1 3 32 32 H 1.09004 * 109.50706 * 62.45483 * 4 3 2 33 33 H 1.08995 * 109.54210 * 302.34427 * 4 3 2 34 34 H 1.08997 * 109.50375 * 183.21864 * 5 4 3 35 35 H 1.08996 * 109.54637 * 63.10402 * 5 4 3 36 36 H 0.97002 * 120.00426 * 359.97438 * 11 9 7 37 37 H 1.09000 * 111.00743 * 35.21616 * 14 12 11 38 38 H 1.08999 * 111.00293 * 159.06285 * 14 12 11 39 39 H 1.09002 * 110.34113 * 204.16678 * 15 14 12 40 40 H 1.08995 * 110.43894 * 81.92165 * 15 14 12 41 41 H 0.96997 * 120.00277 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.88021 * 239.52258 * 25 16 15 43 43 H 1.08996 * 109.88226 * 118.35658 * 25 16 15 44 44 H 1.09006 * 109.50736 * 297.54404 * 26 3 2 45 45 H 1.08995 * 109.50709 * 57.63009 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0674 1.2543 5 6 2.1453 3.5212 1.1877 6 8 3.5521 3.5462 0.9317 7 6 3.9281 2.8910 -0.2825 8 1 3.4548 3.3908 -1.1276 9 6 5.4260 2.9439 -0.4401 10 8 6.1128 3.4075 0.4455 11 7 6.0022 2.4760 -1.5649 12 6 7.4584 2.5269 -1.7178 13 1 7.8644 3.4160 -1.2355 14 6 7.8546 2.4864 -3.2173 15 6 7.8112 0.9599 -3.5045 16 7 8.3236 0.3288 -2.2747 17 6 8.9015 -0.9101 -2.1944 18 1 9.2467 -1.2843 -1.2420 19 6 9.0432 -1.6850 -3.3373 20 7 8.6227 -1.2289 -4.4982 21 14 9.8309 -3.3753 -3.2279 22 1 8.7824 -4.3941 -2.9677 23 1 10.5162 -3.6860 -4.5082 24 1 10.8204 -3.3895 -2.1207 25 6 8.1122 1.2502 -1.1485 26 6 3.4708 1.4307 -0.2309 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.1553 1.5637 2.0903 33 1 0.5891 2.0439 1.3931 34 1 1.9393 4.0153 2.1371 35 1 1.6202 4.0402 0.3858 36 1 5.4529 2.1048 -2.2731 37 1 7.1285 3.0230 -3.8280 38 1 8.8584 2.8840 -3.3671 39 1 8.4519 0.7153 -4.3517 40 1 6.7880 0.6380 -3.6982 41 1 8.7215 -1.7706 -5.2967 42 1 9.0683 1.4974 -0.6873 43 1 7.4511 0.7914 -0.4133 44 1 3.9850 0.9168 0.5814 45 1 3.7045 0.9418 -1.1766 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016305393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:06 Heat of formation + Delta-G solvation = -64.712228 kcal Electronic energy + Delta-G solvation = -25173.695153 eV Core-core repulsion = 21612.258281 eV Total energy + Delta-G solvation = -3561.436872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54698 -40.18434 -38.75155 -37.16071 -35.53977 -33.88988 -32.58485 -31.84473 -30.91807 -29.13765 -27.85920 -26.41777 -25.47798 -23.70447 -22.14490 -21.95300 -21.49093 -21.24921 -19.03384 -18.47549 -17.91817 -17.19095 -16.95105 -16.66890 -16.56848 -16.25954 -15.80096 -15.61727 -15.30586 -15.23171 -14.86143 -14.60968 -14.27668 -13.92390 -13.77284 -13.41093 -13.10579 -12.99992 -12.89871 -12.80892 -12.74929 -12.52897 -12.36197 -12.13926 -12.02172 -11.84356 -11.81723 -11.76561 -11.44895 -10.86717 -10.75528 -10.74689 -10.15285 -9.55760 -8.89644 -7.78538 -5.22136 1.43760 1.46839 1.47352 1.56464 1.77490 2.48569 2.62531 2.99877 3.31607 3.58274 3.63021 3.73513 3.80462 3.87246 3.93474 4.01653 4.05740 4.23280 4.26934 4.30342 4.45955 4.46949 4.57279 4.62607 4.64951 4.71758 4.72498 4.87752 4.89358 4.97236 4.97644 5.05686 5.06246 5.32464 5.43399 5.51627 5.63766 5.77489 5.81141 5.88865 5.99056 6.31906 6.49645 7.10933 7.14833 7.76772 8.39981 9.22688 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.003992 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.017291 B = 7011.820222 C = 8156.326283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.012 3.988 5 C 0.058 3.942 6 O -0.387 6.387 7 C 0.089 3.911 8 H 0.118 0.882 9 C 0.520 3.480 10 O -0.567 6.567 11 N -0.697 5.697 12 C 0.145 3.855 13 H 0.097 0.903 14 C -0.132 4.132 15 C 0.154 3.846 16 N -0.621 5.621 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.057 4.057 20 N -0.942 5.942 21 Si 0.976 3.024 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.275 1.275 25 C 0.126 3.874 26 C 0.034 3.966 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.031 0.969 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.412 0.588 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.001 0.999 41 H 0.249 0.751 42 H 0.026 0.974 43 H 0.009 0.991 44 H 0.025 0.975 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 8.121 5.884 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.116 4.116 5 C -0.018 4.018 6 O -0.305 6.305 7 C 0.028 3.972 8 H 0.136 0.864 9 C 0.305 3.695 10 O -0.445 6.445 11 N -0.349 5.349 12 C 0.040 3.960 13 H 0.115 0.885 14 C -0.170 4.170 15 C 0.029 3.971 16 N -0.348 5.348 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.250 4.250 20 N -0.592 5.592 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.200 1.200 25 C 0.000 4.000 26 C -0.095 4.095 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.248 0.752 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.019 0.981 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.027 0.973 44 H 0.043 0.957 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.479 8.621 6.143 20.434 hybrid contribution 0.702 -1.974 0.362 2.126 sum -16.777 6.647 6.505 19.182 Atomic orbital electron populations 1.21746 0.92656 1.02580 1.02819 1.22214 0.97734 0.87425 1.00964 1.62345 1.11135 1.17319 1.34930 1.22968 1.03274 0.95383 0.89982 1.23011 0.79545 0.95558 1.03661 1.88087 1.25659 1.76682 1.40110 1.21856 0.90720 0.94050 0.90566 0.86440 1.20557 0.90134 0.77080 0.81691 1.90684 1.65559 1.46696 1.41610 1.45787 1.07695 1.62100 1.19357 1.21773 0.79600 0.96879 0.97792 0.88531 1.23267 1.02664 0.97892 0.93206 1.21872 0.96382 0.88231 0.90610 1.44754 1.70242 1.15557 1.04219 1.19366 1.31477 0.92038 0.94346 0.91099 1.25503 1.02195 1.02165 0.95165 1.70000 1.53073 1.37580 0.98507 0.85120 0.77975 0.79650 0.76808 1.21402 1.21542 1.20017 1.21762 0.96757 0.90780 0.90711 1.22567 0.89375 0.95065 1.02448 0.91158 0.91894 0.91604 0.90609 0.95312 0.95087 0.86567 0.86113 0.90469 0.75153 0.87989 0.89901 0.90587 0.98129 0.94143 0.95633 0.97311 0.95713 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.84 71.98 0.71 -1.09 16 2 C 0.04 0.79 5.68 86.30 0.49 1.28 16 3 N -0.53 -10.49 4.73 -895.19 -4.23 -14.72 16 4 C 0.01 0.20 5.43 86.31 0.47 0.67 16 5 C 0.06 1.03 7.01 72.01 0.50 1.54 16 6 O -0.39 -10.66 10.01 -130.02 -1.30 -11.97 16 7 C 0.09 2.28 3.22 29.88 0.10 2.38 16 8 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 9 C 0.52 16.86 7.18 87.66 0.63 17.49 16 10 O -0.57 -23.39 16.19 15.92 0.26 -23.14 16 11 N -0.70 -21.21 5.07 -436.92 -2.21 -23.43 16 12 C 0.14 5.08 3.28 46.18 0.15 5.23 16 13 H 0.10 3.34 7.62 -2.39 -0.02 3.32 16 14 C -0.13 -4.45 6.69 32.15 0.22 -4.23 16 15 C 0.15 7.05 5.87 87.02 0.51 7.56 16 16 N -0.62 -31.79 3.40 -691.02 -2.35 -34.13 16 17 C -0.24 -13.74 10.27 84.03 0.86 -12.88 16 18 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 19 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 20 N -0.94 -54.15 10.09 21.65 0.22 -53.93 16 21 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.13 5.58 6.99 86.73 0.61 6.18 16 26 C 0.03 0.84 4.89 86.32 0.42 1.26 16 27 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.69 6.51 -2.39 -0.02 0.68 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.42 8.04 -2.39 -0.02 1.40 16 31 H 0.03 0.55 8.12 -2.39 -0.02 0.54 16 32 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 1.38 6.37 -2.39 -0.02 1.36 16 34 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.41 10.80 8.52 -92.71 -0.79 10.01 16 37 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.08 4.03 5.87 -2.39 -0.01 4.01 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.01 0.42 8.04 -2.39 -0.02 0.40 16 44 H 0.02 0.72 8.14 -2.38 -0.02 0.71 16 45 H 0.10 2.30 7.97 -2.39 -0.02 2.28 16 Total: -1.00 -71.09 354.95 -1.27 -72.37 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.18 Total: 18.94 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 6.13 Total: 22.67 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -8.57 Total: -126.21 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.04 Total: -35.10 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.09 -1.27 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016305393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.653 kcal (2) G-P(sol) polarization free energy of solvation -71.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds