Wall clock time and date at job start Tue Mar 31 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 C 1.50701 * 109.47255 * 120.00400 * 2 1 3 5 5 O 1.21286 * 119.99823 * 105.05747 * 4 2 1 6 6 N 1.34763 * 120.00077 * 285.06201 * 4 2 1 7 7 C 1.46502 * 120.00016 * 180.02562 * 6 4 2 8 8 H 1.08992 * 110.64097 * 328.14044 * 7 6 4 9 9 C 1.55154 * 110.72245 * 204.99780 * 7 6 4 10 10 C 1.54913 * 101.58462 * 277.13885 * 9 7 6 11 11 N 1.47433 * 104.82749 * 322.98986 * 10 9 7 12 12 C 1.36936 * 125.64610 * 204.17076 * 11 10 9 13 13 H 1.07998 * 120.00042 * 179.97438 * 12 11 10 14 14 C 1.38822 * 120.00099 * 359.94746 * 12 11 10 15 15 N 1.31626 * 119.99639 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00015 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47209 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47159 * 120.00106 * 16 14 12 19 19 H 1.48491 * 109.47523 * 239.99977 * 16 14 12 20 20 C 1.47015 * 108.70353 * 24.13080 * 11 10 9 21 21 N 1.46904 * 109.46773 * 240.00396 * 2 1 3 22 22 C 1.47017 * 110.99652 * 75.81490 * 21 2 1 23 23 C 1.53101 * 109.25596 * 177.60783 * 22 21 2 24 24 O 1.43016 * 109.25739 * 56.84629 * 23 22 21 25 25 C 1.43011 * 113.74224 * 301.32911 * 24 23 22 26 26 C 1.47009 * 111.00059 * 312.17906 * 21 2 1 27 27 H 1.09000 * 109.46767 * 299.98986 * 1 2 3 28 28 H 1.08991 * 109.47164 * 59.99364 * 1 2 3 29 29 H 1.09006 * 109.47032 * 179.97438 * 1 2 3 30 30 H 0.97008 * 120.00555 * 359.97438 * 6 4 2 31 31 H 1.09003 * 111.00455 * 35.21210 * 9 7 6 32 32 H 1.08996 * 111.01131 * 159.06606 * 9 7 6 33 33 H 1.09005 * 110.36919 * 81.82392 * 10 9 7 34 34 H 1.08996 * 110.36881 * 204.15236 * 10 9 7 35 35 H 0.96996 * 119.99401 * 179.97438 * 15 14 12 36 36 H 1.09009 * 109.87741 * 239.52414 * 20 11 10 37 37 H 1.09001 * 110.01651 * 118.42993 * 20 11 10 38 38 H 1.09006 * 109.50545 * 297.53834 * 22 21 2 39 39 H 1.08993 * 109.51124 * 57.67184 * 22 21 2 40 40 H 1.09005 * 109.50480 * 296.91228 * 23 22 21 41 41 H 1.08996 * 109.54202 * 176.80297 * 23 22 21 42 42 H 1.09005 * 109.50756 * 298.73739 * 25 24 23 43 43 H 1.08999 * 109.54896 * 178.62883 * 25 24 23 44 44 H 1.08997 * 109.50951 * 302.32757 * 26 21 2 45 45 H 1.09002 * 109.51150 * 62.45868 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4918 -1.8293 1.1395 6 7 1.9711 -0.1028 2.4317 7 6 2.4600 -0.7933 3.6277 8 1 2.3106 -1.8692 3.5382 9 6 1.7625 -0.2462 4.9011 10 6 2.6095 1.0155 5.2020 11 7 3.9910 0.6337 4.8566 12 6 5.1274 1.2058 5.3631 13 1 6.0974 0.8528 5.0454 14 6 5.0327 2.2398 6.2845 15 7 3.8504 2.6700 6.6716 16 14 6.5828 3.0197 6.9758 17 1 7.7748 2.3601 6.3848 18 1 6.6010 4.4663 6.6406 19 1 6.6051 2.8533 8.4512 20 6 3.9465 -0.4636 3.8792 21 7 2.0196 -0.6924 -1.1995 22 6 1.8781 0.1557 -2.3920 23 6 2.4535 -0.5793 -3.6056 24 8 1.7893 -1.8372 -3.7537 25 6 1.9073 -2.6888 -2.6109 26 6 1.3264 -1.9751 -1.3873 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6040 0.7922 2.5044 31 1 0.7256 0.0194 4.6951 32 1 1.8253 -0.9632 5.7197 33 1 2.2805 1.8499 4.5827 34 1 2.5407 1.2756 6.2583 35 1 3.7843 3.3922 7.3156 36 1 4.4575 -1.3387 4.2808 37 1 4.4201 -0.1530 2.9478 38 1 0.8231 0.3701 -2.5630 39 1 2.4201 1.0892 -2.2413 40 1 3.5205 -0.7463 -3.4577 41 1 2.2999 0.0212 -4.5021 42 1 2.9584 -2.9171 -2.4341 43 1 1.3586 -3.6139 -2.7872 44 1 1.4657 -2.5970 -0.5030 45 1 0.2626 -1.7948 -1.5422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016434196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:31 Heat of formation + Delta-G solvation = -37.779745 kcal Electronic energy + Delta-G solvation = -25168.144365 eV Core-core repulsion = 21607.875373 eV Total energy + Delta-G solvation = -3560.268992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45845 -39.10573 -37.36934 -35.94334 -33.85313 -32.05529 -31.38884 -30.80908 -29.12072 -27.25465 -26.88119 -24.73869 -24.21345 -23.82381 -20.88637 -20.20411 -19.85376 -19.75789 -17.27020 -16.93898 -16.69460 -16.11857 -15.75776 -15.33986 -15.14551 -14.80233 -14.68100 -14.60721 -14.03336 -13.81631 -13.67154 -13.27699 -12.65798 -12.55584 -12.45729 -12.25743 -12.00499 -11.92271 -11.63268 -11.49598 -11.24011 -11.07411 -10.90994 -10.78356 -10.69773 -10.38074 -10.11080 -9.99688 -9.89817 -9.60285 -9.35791 -8.75232 -8.61373 -8.43499 -6.85588 -5.68335 -3.09062 2.82192 3.18891 3.38453 3.44635 3.46913 3.66967 3.83414 4.47848 4.64573 4.67034 4.78423 4.88524 4.95853 4.98610 5.04892 5.14058 5.28684 5.38075 5.41495 5.43231 5.46574 5.49819 5.54464 5.60639 5.72698 5.74979 5.84459 5.85413 5.88621 6.25622 6.35741 6.47594 6.55272 6.68812 6.74348 6.78684 6.98013 7.06283 7.40262 7.61237 7.78392 7.84419 8.32435 8.50454 9.20128 9.80736 10.45057 11.36019 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.003232 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.153863 B = 8661.867820 C = 9015.617226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 H 0.105 0.895 4 C 0.522 3.478 5 O -0.533 6.533 6 N -0.710 5.710 7 C 0.132 3.868 8 H 0.089 0.911 9 C -0.153 4.153 10 C 0.152 3.848 11 N -0.604 5.604 12 C -0.219 4.219 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.924 5.924 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.127 3.873 21 N -0.514 5.514 22 C 0.016 3.984 23 C 0.065 3.935 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.011 3.989 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.399 0.601 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.010 0.990 34 H 0.108 0.892 35 H 0.251 0.749 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -5.354 -16.232 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.049 4.049 3 H 0.123 0.877 4 C 0.307 3.693 5 O -0.409 6.409 6 N -0.360 5.360 7 C 0.027 3.973 8 H 0.107 0.893 9 C -0.193 4.193 10 C 0.027 3.973 11 N -0.330 5.330 12 C -0.347 4.347 13 H 0.095 0.905 14 C -0.208 4.208 15 N -0.573 5.573 16 Si 0.745 3.255 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.001 3.999 21 N -0.238 5.238 22 C -0.112 4.112 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.117 4.117 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.234 0.766 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.028 0.972 34 H 0.126 0.874 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.574 -6.170 -16.252 19.383 hybrid contribution -0.058 1.329 0.554 1.441 sum -8.632 -4.841 -15.698 18.557 Atomic orbital electron populations 1.22367 0.95004 1.03300 1.03238 1.21645 0.94407 0.98867 0.89959 0.87704 1.20228 0.78431 0.86539 0.84063 1.90617 1.45296 1.19382 1.85626 1.45968 1.63303 1.19894 1.06876 1.21975 0.94931 0.96454 0.83900 0.89326 1.23343 0.98734 1.01419 0.95768 1.21947 0.82053 0.89994 1.03340 1.44525 1.02619 1.38257 1.47599 1.19151 0.85037 1.12190 1.18350 0.90456 1.24773 0.97056 0.98985 0.99960 1.69793 1.20759 1.30523 1.36244 0.85988 0.81999 0.78871 0.78611 1.20527 1.21802 1.21742 1.21681 0.93188 0.91975 0.93099 1.62038 1.56606 1.03866 1.01306 1.22846 1.00332 0.97185 0.90880 1.22633 0.96688 0.84811 0.97051 1.87948 1.75860 1.27937 1.39093 1.22678 1.01323 0.92815 0.84387 1.23032 0.95886 0.91916 1.00867 0.91019 0.91560 0.91402 0.76649 0.91815 0.90675 0.97216 0.87420 0.93835 0.95192 0.95594 0.93758 0.89514 0.92155 0.88537 0.92081 0.88598 0.87338 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 8.29 37.16 0.31 -1.38 16 2 C 0.06 0.74 2.70 -68.86 -0.19 0.55 16 3 H 0.11 1.12 7.93 -51.93 -0.41 0.71 16 4 C 0.52 7.92 6.99 -10.99 -0.08 7.84 16 5 O -0.53 -9.73 13.93 5.55 0.08 -9.65 16 6 N -0.71 -10.86 5.09 -52.03 -0.26 -11.12 16 7 C 0.13 2.34 3.33 -66.09 -0.22 2.12 16 8 H 0.09 1.56 7.55 -51.93 -0.39 1.17 16 9 C -0.15 -2.73 6.67 -24.58 -0.16 -2.89 16 10 C 0.15 3.49 5.85 -2.52 -0.01 3.48 16 11 N -0.60 -15.29 3.39 -170.06 -0.58 -15.86 16 12 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 13 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 14 C -0.01 -0.35 5.49 -17.42 -0.10 -0.45 16 15 N -0.92 -26.38 10.09 55.49 0.56 -25.83 16 16 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 C 0.13 2.77 6.98 -3.07 -0.02 2.75 16 21 N -0.51 -6.20 4.43 -227.71 -1.01 -7.21 16 22 C 0.02 0.15 5.44 -3.71 -0.02 0.13 16 23 C 0.07 0.62 7.01 37.21 0.26 0.88 16 24 O -0.39 -4.46 10.83 -35.23 -0.38 -4.84 16 25 C 0.06 0.70 7.01 37.21 0.26 0.96 16 26 C 0.01 0.12 4.50 -3.71 -0.02 0.11 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.54 6.99 -51.93 -0.36 0.18 16 29 H 0.07 0.67 6.37 -51.93 -0.33 0.34 16 30 H 0.40 5.53 8.64 -40.82 -0.35 5.18 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.11 2.83 5.87 -51.93 -0.30 2.53 16 35 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 38 H 0.04 0.40 6.98 -51.93 -0.36 0.04 16 39 H 0.09 0.74 8.04 -51.93 -0.42 0.33 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.11 1.47 5.92 -51.93 -0.31 1.16 16 45 H 0.04 0.45 6.36 -51.93 -0.33 0.12 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -31.92 347.26 -8.87 -40.79 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.34 Total: 3.67 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.14 Total: 7.84 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -1.29 Total: -60.02 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.30 Total: -14.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.92 -8.87 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016434196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.010 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds